Wall clock time and date at job start Tue Mar 31 2020 13:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31413 * 125.50630 * 2 1 4 4 N 1.39935 * 108.83859 * 180.02562 * 3 2 1 5 5 C 1.36519 * 132.57035 * 180.02562 * 4 3 2 6 6 C 1.35526 * 119.12477 * 179.97438 * 5 4 3 7 7 C 1.40241 * 119.44974 * 0.26065 * 6 5 4 8 8 N 1.31218 * 120.28500 * 359.48010 * 7 6 5 9 9 C 1.33976 * 120.80872 * 0.50720 * 8 7 6 10 10 C 1.38664 * 125.50429 * 180.02562 * 2 1 3 11 11 S 1.76196 * 126.17529 * 359.97438 * 10 2 1 12 12 O 1.42092 * 106.40477 * 23.51433 * 11 10 2 13 13 O 1.42104 * 106.40250 * 156.43522 * 11 10 2 14 14 N 1.65605 * 107.22050 * 269.97516 * 11 10 2 15 15 C 1.46501 * 119.99983 * 270.00523 * 14 11 10 16 16 C 1.46501 * 119.99905 * 89.99681 * 14 11 10 17 17 H 1.08999 * 109.47387 * 0.02562 * 16 14 11 18 18 C 1.53005 * 109.46718 * 120.00360 * 16 14 11 19 19 C 1.50700 * 109.47188 * 240.00253 * 16 14 11 20 20 H 1.07999 * 119.99964 * 0.02562 * 19 16 14 21 21 C 1.37877 * 119.99919 * 179.97438 * 19 16 14 22 22 N 1.31512 * 119.99879 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 120.00082 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46937 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47087 * 120.00163 * 23 21 19 26 26 H 1.48498 * 109.47312 * 240.00358 * 23 21 19 27 27 H 1.09000 * 109.47213 * 269.96318 * 1 2 3 28 28 H 1.09003 * 109.46843 * 29.96398 * 1 2 3 29 29 H 1.09000 * 109.47013 * 149.95972 * 1 2 3 30 30 H 1.08003 * 120.43912 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.27148 * 179.97438 * 6 5 4 32 32 H 1.08003 * 119.85846 * 179.74720 * 7 6 5 33 33 H 1.08997 * 109.47232 * 89.99581 * 15 14 11 34 34 H 1.08998 * 109.47058 * 209.99716 * 15 14 11 35 35 H 1.09006 * 109.47047 * 329.99406 * 15 14 11 36 36 H 1.08992 * 109.46878 * 60.00284 * 18 16 14 37 37 H 1.08998 * 109.46405 * 180.02562 * 18 16 14 38 38 H 1.08996 * 109.47122 * 299.99726 * 18 16 14 39 39 H 0.97000 * 119.99695 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2703 1.0698 0.0000 4 7 3.6108 0.6684 -0.0006 5 6 4.7839 1.3667 -0.0004 6 6 5.9563 0.6867 -0.0006 7 6 5.9400 -0.7156 -0.0066 8 7 4.7994 -1.3642 -0.0016 9 6 3.6341 -0.7031 -0.0010 10 6 2.3123 -1.1288 -0.0005 11 16 1.7585 -2.8015 -0.0006 12 8 0.4456 -2.7895 -0.5440 13 8 2.8184 -3.5751 -0.5461 14 7 1.6056 -3.2674 1.5812 15 6 2.7425 -3.8722 2.2798 16 6 0.3336 -3.0746 2.2819 17 1 -0.3876 -2.6153 1.6059 18 6 -0.1999 -4.4293 2.7523 19 6 0.5476 -2.1777 3.4738 20 1 1.5325 -1.7896 3.6877 21 6 -0.5143 -1.8515 4.2906 22 7 -1.7137 -2.3237 4.0298 23 14 -0.2489 -0.7402 5.7685 24 1 1.1811 -0.3468 5.8415 25 1 -1.0900 0.4758 5.6308 26 1 -0.6271 -1.4659 7.0077 27 1 -0.3633 -0.0007 1.0277 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8896 -0.5145 30 1 4.7779 2.4467 -0.0001 31 1 6.8952 1.2204 -0.0009 32 1 6.8704 -1.2641 -0.0109 33 1 3.3331 -3.0905 2.7573 34 1 2.3765 -4.5650 3.0375 35 1 3.3636 -4.4112 1.5643 36 1 0.5212 -4.8889 3.4281 37 1 -1.1465 -4.2859 3.2732 38 1 -0.3547 -5.0781 1.8902 39 1 -2.4606 -2.0945 4.6047 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413287793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:56 Heat of formation + Delta-G solvation = 51.671902 kcal Electronic energy + Delta-G solvation = -26673.697703 eV Core-core repulsion = 22939.204637 eV Total energy + Delta-G solvation = -3734.493066 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.37378 -38.29137 -36.45850 -36.03450 -35.04310 -34.34836 -32.54325 -32.05809 -29.48087 -28.98300 -28.06525 -25.46298 -25.07897 -24.58906 -23.33051 -20.89080 -20.58434 -18.68009 -17.86132 -17.45572 -16.86900 -16.54352 -16.29462 -16.04017 -15.44728 -15.11490 -14.57287 -14.27081 -13.43933 -13.34842 -13.32573 -13.08851 -12.94911 -12.71693 -12.26378 -12.23724 -11.84149 -11.75030 -11.60249 -11.29053 -11.27148 -11.06073 -11.02031 -10.91957 -10.76308 -10.37575 -10.34749 -10.19538 -9.96609 -9.93400 -9.36507 -9.18409 -8.45757 -8.35910 -7.82193 -6.06820 -4.14032 0.30194 0.67192 1.30203 1.98310 2.42350 3.18584 3.23602 3.32377 3.35443 3.66232 3.86364 4.02154 4.14442 4.37982 4.56179 4.59117 4.81297 4.95076 5.10971 5.23396 5.24007 5.63528 5.69780 5.86817 5.92369 6.14059 6.22169 6.31840 6.39492 6.48222 6.71826 6.77629 6.91659 6.96492 7.16571 7.35423 7.43538 7.57656 7.70088 7.83783 8.09874 8.31626 8.89848 9.51949 10.97948 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013086 B = 0.005944 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.104605 B = 4709.261251 C = 5382.428945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.226 3.774 3 N -0.321 5.321 4 N -0.306 5.306 5 C 0.168 3.832 6 C -0.233 4.233 7 C 0.189 3.811 8 N -0.453 5.453 9 C 0.359 3.641 10 C -0.799 4.799 11 S 2.720 3.280 12 O -0.964 6.964 13 O -0.967 6.967 14 N -0.980 5.980 15 C 0.104 3.896 16 C 0.266 3.734 17 H 0.062 0.938 18 C -0.146 4.146 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.066 3.934 22 N -0.886 5.886 23 Si 0.890 3.110 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.181 0.819 31 H 0.170 0.830 32 H 0.186 0.814 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.093 0.907 38 H 0.015 0.985 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.528 5.852 -6.830 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.064 3.936 3 N -0.145 5.145 4 N -0.072 5.072 5 C 0.031 3.969 6 C -0.257 4.257 7 C 0.007 3.993 8 N -0.164 5.164 9 C 0.127 3.873 10 C -0.896 4.896 11 S 2.807 3.193 12 O -0.954 6.954 13 O -0.957 6.957 14 N -0.820 5.820 15 C -0.043 4.043 16 C 0.163 3.837 17 H 0.080 0.920 18 C -0.205 4.205 19 C -0.561 4.561 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.524 5.524 23 Si 0.718 3.282 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.127 0.873 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.198 0.802 31 H 0.188 0.812 32 H 0.202 0.798 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.112 0.888 38 H 0.034 0.966 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.855 5.773 -7.487 15.957 hybrid contribution 0.660 1.641 1.436 2.278 sum 13.515 7.413 -6.051 16.560 Atomic orbital electron populations 1.21007 0.84089 1.05892 1.06294 1.22012 0.97427 0.87817 0.86326 1.77910 0.81930 1.20931 1.33730 1.47612 1.06987 1.07519 1.45061 1.22161 0.81662 0.99944 0.93116 1.21894 0.98343 0.96232 1.09227 1.23617 0.96575 0.91670 0.87484 1.68492 0.95977 1.36654 1.15244 1.19973 0.93277 0.80307 0.93783 1.31486 0.95767 1.25956 1.36351 1.01012 0.72840 0.72318 0.73116 1.93469 1.37831 1.86757 1.77381 1.93501 1.57444 1.67444 1.77323 1.57405 1.20444 1.73615 1.30563 1.21223 0.87840 0.97557 0.97659 1.18768 0.78323 0.94187 0.92434 0.91995 1.22066 1.03122 0.96565 0.98771 1.21432 0.95125 1.29049 1.10460 0.92267 1.24873 0.95128 0.96080 0.97571 1.69881 0.99634 1.44353 1.38567 0.86574 0.78103 0.80599 0.82911 1.20122 1.20957 1.20886 0.87327 0.90189 0.86238 0.80180 0.81231 0.79758 0.94438 0.90649 0.91688 0.94838 0.88829 0.96626 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 10.12 36.01 0.36 -1.68 16 2 C 0.23 4.42 7.15 -82.61 -0.59 3.83 16 3 N -0.32 -5.90 12.66 33.53 0.42 -5.48 16 4 N -0.31 -4.97 3.90 -12.20 -0.05 -5.02 16 5 C 0.17 1.75 11.30 -16.43 -0.19 1.56 16 6 C -0.23 -1.76 10.05 -39.80 -0.40 -2.16 16 7 C 0.19 1.90 11.27 -17.06 -0.19 1.70 16 8 N -0.45 -7.28 10.27 -12.21 -0.13 -7.40 16 9 C 0.36 6.61 7.73 -155.51 -1.20 5.41 16 10 C -0.80 -16.31 6.25 -39.19 -0.24 -16.55 16 11 S 2.72 58.69 5.78 -107.50 -0.62 58.07 16 12 O -0.96 -21.96 13.87 -57.17 -0.79 -22.75 16 13 O -0.97 -21.49 16.27 -57.17 -0.93 -22.42 16 14 N -0.98 -21.60 3.06 -115.85 -0.35 -21.95 16 15 C 0.10 2.01 9.90 59.85 0.59 2.60 16 16 C 0.27 6.54 2.62 -69.08 -0.18 6.36 16 17 H 0.06 1.63 6.91 -51.93 -0.36 1.27 16 18 C -0.15 -3.46 8.95 37.16 0.33 -3.13 16 19 C -0.52 -13.62 8.37 -34.44 -0.29 -13.91 16 20 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 21 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 22 N -0.89 -24.01 11.32 55.43 0.63 -23.38 16 23 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.12 2.23 5.59 -51.93 -0.29 1.94 16 30 H 0.18 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 32 H 0.19 1.01 8.06 -52.48 -0.42 0.58 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.41 6.43 -51.93 -0.33 1.07 16 35 H 0.06 1.16 7.02 -51.93 -0.36 0.80 16 36 H 0.03 0.74 6.66 -51.93 -0.35 0.40 16 37 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -34.79 338.39 -8.34 -43.13 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.50 Total: 0.70 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.09 Total: -14.33 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.52 Total: -63.23 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -1.72 Total: -45.17 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 58.69 SS G_CDS: -0.62 Total: 58.07 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.79 -8.34 -43.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413287793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.797 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds