Wall clock time and date at job start Tue Mar 31 2020 13:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31413 * 125.50630 * 2 1 4 4 N 1.39935 * 108.83859 * 180.02562 * 3 2 1 5 5 C 1.36519 * 132.57035 * 180.02562 * 4 3 2 6 6 C 1.35526 * 119.12477 * 179.97438 * 5 4 3 7 7 C 1.40241 * 119.44974 * 0.26065 * 6 5 4 8 8 N 1.31218 * 120.28500 * 359.48010 * 7 6 5 9 9 C 1.33976 * 120.80872 * 0.50720 * 8 7 6 10 10 C 1.38664 * 125.50429 * 180.02562 * 2 1 3 11 11 S 1.76196 * 126.17529 * 359.97438 * 10 2 1 12 12 O 1.42092 * 106.40477 * 23.51433 * 11 10 2 13 13 O 1.42104 * 106.40250 * 156.43522 * 11 10 2 14 14 N 1.65605 * 107.22050 * 269.97516 * 11 10 2 15 15 C 1.46501 * 119.99983 * 270.00523 * 14 11 10 16 16 C 1.46501 * 119.99905 * 89.99681 * 14 11 10 17 17 H 1.08999 * 109.47387 * 0.02562 * 16 14 11 18 18 C 1.53005 * 109.46718 * 120.00360 * 16 14 11 19 19 C 1.50700 * 109.47188 * 240.00253 * 16 14 11 20 20 H 1.07999 * 119.99964 * 0.02562 * 19 16 14 21 21 C 1.37877 * 119.99919 * 179.97438 * 19 16 14 22 22 N 1.31512 * 119.99879 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 120.00082 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46937 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47087 * 120.00163 * 23 21 19 26 26 H 1.48498 * 109.47312 * 240.00358 * 23 21 19 27 27 H 1.09000 * 109.47213 * 269.96318 * 1 2 3 28 28 H 1.09003 * 109.46843 * 29.96398 * 1 2 3 29 29 H 1.09000 * 109.47013 * 149.95972 * 1 2 3 30 30 H 1.08003 * 120.43912 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.27148 * 179.97438 * 6 5 4 32 32 H 1.08003 * 119.85846 * 179.74720 * 7 6 5 33 33 H 1.08997 * 109.47232 * 89.99581 * 15 14 11 34 34 H 1.08998 * 109.47058 * 209.99716 * 15 14 11 35 35 H 1.09006 * 109.47047 * 329.99406 * 15 14 11 36 36 H 1.08992 * 109.46878 * 60.00284 * 18 16 14 37 37 H 1.08998 * 109.46405 * 180.02562 * 18 16 14 38 38 H 1.08996 * 109.47122 * 299.99726 * 18 16 14 39 39 H 0.97000 * 119.99695 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2703 1.0698 0.0000 4 7 3.6108 0.6684 -0.0006 5 6 4.7839 1.3667 -0.0004 6 6 5.9563 0.6867 -0.0006 7 6 5.9400 -0.7156 -0.0066 8 7 4.7994 -1.3642 -0.0016 9 6 3.6341 -0.7031 -0.0010 10 6 2.3123 -1.1288 -0.0005 11 16 1.7585 -2.8015 -0.0006 12 8 0.4456 -2.7895 -0.5440 13 8 2.8184 -3.5751 -0.5461 14 7 1.6056 -3.2674 1.5812 15 6 2.7425 -3.8722 2.2798 16 6 0.3336 -3.0746 2.2819 17 1 -0.3876 -2.6153 1.6059 18 6 -0.1999 -4.4293 2.7523 19 6 0.5476 -2.1777 3.4738 20 1 1.5325 -1.7896 3.6877 21 6 -0.5143 -1.8515 4.2906 22 7 -1.7137 -2.3237 4.0298 23 14 -0.2489 -0.7402 5.7685 24 1 1.1811 -0.3468 5.8415 25 1 -1.0900 0.4758 5.6308 26 1 -0.6271 -1.4659 7.0077 27 1 -0.3633 -0.0007 1.0277 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8896 -0.5145 30 1 4.7779 2.4467 -0.0001 31 1 6.8952 1.2204 -0.0009 32 1 6.8704 -1.2641 -0.0109 33 1 3.3331 -3.0905 2.7573 34 1 2.3765 -4.5650 3.0375 35 1 3.3636 -4.4112 1.5643 36 1 0.5212 -4.8889 3.4281 37 1 -1.1465 -4.2859 3.2732 38 1 -0.3547 -5.0781 1.8902 39 1 -2.4606 -2.0945 4.6047 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413287793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:56 Heat of formation + Delta-G solvation = 26.379073 kcal Electronic energy + Delta-G solvation = -26674.794483 eV Core-core repulsion = 22939.204637 eV Total energy + Delta-G solvation = -3735.589846 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.50347 -39.38507 -38.15585 -37.83228 -36.75134 -35.41809 -34.49446 -33.15204 -30.87187 -30.69503 -29.28741 -27.27880 -26.95271 -25.55231 -24.47531 -22.51673 -22.12092 -19.98839 -19.23837 -18.61133 -18.50282 -18.26867 -17.74265 -17.29877 -16.93226 -16.45843 -16.22157 -15.38501 -15.14797 -14.84615 -14.59989 -14.56067 -14.31344 -14.14636 -13.64352 -13.59115 -13.42162 -13.35124 -13.16133 -13.09251 -12.92146 -12.77123 -12.70719 -12.57156 -12.32393 -12.20905 -12.13286 -11.86339 -11.74282 -11.10555 -10.97086 -10.52565 -10.48620 -9.70375 -9.46942 -8.08303 -6.21616 -0.63906 -0.34120 -0.24723 0.92600 1.05546 1.38637 1.41671 1.50536 2.16135 2.34096 2.46191 2.64064 2.83034 2.97896 3.18971 3.37607 3.47967 3.75577 3.98487 4.11829 4.22266 4.28076 4.52106 4.64503 4.70902 4.75258 4.81129 4.83854 4.98888 5.02793 5.06261 5.15085 5.21217 5.26433 5.46690 5.63416 5.79531 5.90210 6.10198 6.15152 6.33162 6.44998 6.85723 7.46692 8.96057 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013086 B = 0.005944 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.104605 B = 4709.261251 C = 5382.428945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.209 3.791 3 N -0.336 5.336 4 N -0.310 5.310 5 C 0.143 3.857 6 C -0.192 4.192 7 C 0.198 3.802 8 N -0.502 5.502 9 C 0.352 3.648 10 C -0.841 4.841 11 S 2.730 3.270 12 O -0.989 6.989 13 O -0.980 6.980 14 N -0.988 5.988 15 C 0.103 3.897 16 C 0.271 3.729 17 H 0.037 0.963 18 C -0.140 4.140 19 C -0.526 4.526 20 H 0.051 0.949 21 C 0.025 3.975 22 N -0.909 5.909 23 Si 0.947 3.053 24 H -0.277 1.277 25 H -0.281 1.281 26 H -0.276 1.276 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.220 0.780 31 H 0.235 0.765 32 H 0.235 0.765 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.024 0.976 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.308 7.651 -6.473 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.047 3.953 3 N -0.160 5.160 4 N -0.077 5.077 5 C 0.009 3.991 6 C -0.214 4.214 7 C 0.019 3.981 8 N -0.215 5.215 9 C 0.117 3.883 10 C -0.942 4.942 11 S 2.821 3.179 12 O -0.980 6.980 13 O -0.970 6.970 14 N -0.827 5.827 15 C -0.043 4.043 16 C 0.167 3.833 17 H 0.055 0.945 18 C -0.199 4.199 19 C -0.566 4.566 20 H 0.069 0.931 21 C -0.175 4.175 22 N -0.549 5.549 23 Si 0.774 3.226 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.202 1.202 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.236 0.764 31 H 0.251 0.749 32 H 0.251 0.749 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.678 7.557 -7.128 19.649 hybrid contribution -0.152 1.191 1.253 1.736 sum 16.526 8.749 -5.875 19.600 Atomic orbital electron populations 1.20907 0.84257 1.06510 1.05207 1.22065 0.97766 0.88214 0.87246 1.77722 0.83280 1.20615 1.34405 1.47777 1.07501 1.07399 1.44985 1.23287 0.80499 1.02157 0.93199 1.22685 0.99603 0.95188 1.03946 1.24727 0.96343 0.93572 0.83425 1.68577 0.96701 1.37926 1.18289 1.19967 0.93497 0.81359 0.93485 1.31034 0.97643 1.24755 1.40766 1.00339 0.72156 0.72755 0.72659 1.93427 1.39186 1.87485 1.77857 1.93461 1.57490 1.68586 1.77454 1.57338 1.20264 1.74509 1.30622 1.21334 0.87255 0.97684 0.98013 1.18494 0.79113 0.94096 0.91612 0.94535 1.21957 1.02342 0.96530 0.99104 1.21535 0.94779 1.29346 1.10938 0.93060 1.25508 0.94918 0.97233 0.99834 1.69986 1.00194 1.45216 1.39455 0.85684 0.77770 0.79013 0.80171 1.20163 1.20740 1.20204 0.89187 0.87489 0.87703 0.76362 0.74883 0.74913 0.94234 0.90174 0.90344 0.93762 0.90780 0.95711 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 10.12 71.24 0.72 -3.50 16 2 C 0.21 8.51 7.15 42.72 0.31 8.82 16 3 N -0.34 -12.40 12.66 -47.84 -0.61 -13.01 16 4 N -0.31 -9.64 3.90 -192.51 -0.75 -10.39 16 5 C 0.14 2.37 11.30 83.34 0.94 3.31 16 6 C -0.19 -1.70 10.05 22.13 0.22 -1.48 16 7 C 0.20 3.01 11.27 85.27 0.96 3.97 16 8 N -0.50 -15.14 10.27 -192.55 -1.98 -17.12 16 9 C 0.35 12.81 7.73 133.13 1.03 13.84 16 10 C -0.84 -35.50 6.25 22.52 0.14 -35.36 16 11 S 2.73 122.93 5.78 -56.49 -0.33 122.60 16 12 O -0.99 -47.96 13.87 -128.00 -1.78 -49.73 16 13 O -0.98 -44.65 16.27 -128.00 -2.08 -46.73 16 14 N -0.99 -44.92 3.06 -520.43 -1.59 -46.52 16 15 C 0.10 4.00 9.90 127.77 1.27 5.27 16 16 C 0.27 13.83 2.62 44.25 0.12 13.95 16 17 H 0.04 2.05 6.91 -2.39 -0.02 2.03 16 18 C -0.14 -6.82 8.95 71.98 0.64 -6.18 16 19 C -0.53 -28.18 8.37 25.60 0.21 -27.97 16 20 H 0.05 2.77 7.65 -2.91 -0.02 2.75 16 21 C 0.03 1.35 5.30 84.65 0.45 1.80 16 22 N -0.91 -50.43 11.32 21.45 0.24 -50.19 16 23 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 27 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 28 H 0.11 3.30 8.14 -2.39 -0.02 3.29 16 29 H 0.10 4.26 5.59 -2.39 -0.01 4.25 16 30 H 0.22 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.23 -0.87 8.06 -2.91 -0.02 -0.89 16 32 H 0.23 1.04 8.06 -2.91 -0.02 1.01 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 2.99 6.43 -2.39 -0.02 2.97 16 35 H 0.08 2.81 7.02 -2.38 -0.02 2.79 16 36 H 0.04 2.00 6.66 -2.39 -0.02 1.98 16 37 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 38 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -80.83 338.39 1.25 -79.58 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.09 Total: 10.13 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 7.01 Total: -23.52 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -4.69 Total: -137.23 kcal Atomic # 8 Polarization: -92.60 SS G_CDS: -3.86 Total: -96.46 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 122.93 SS G_CDS: -0.33 Total: 122.60 kcal Total: -80.83 1.25 -79.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413287793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.954 kcal (2) G-P(sol) polarization free energy of solvation -80.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds