Wall clock time and date at job start Tue Mar 31 2020 13:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99846 * 2 1 4 4 H 1.48498 * 109.46931 * 270.00067 * 3 2 1 5 5 H 1.48505 * 109.46882 * 29.99614 * 3 2 1 6 6 H 1.48493 * 109.47282 * 149.99613 * 3 2 1 7 7 C 1.37879 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.53039 * 109.46019 * 180.02562 * 9 7 2 11 11 C 1.53190 * 109.31140 * 178.63300 * 10 9 7 12 12 N 1.46924 * 108.77994 * 54.63435 * 11 10 9 13 13 C 1.34774 * 120.63248 * 126.36755 * 12 11 10 14 14 O 1.21579 * 120.00215 * 354.77056 * 13 12 11 15 15 N 1.34776 * 120.00263 * 175.04538 * 13 12 11 16 16 C 1.38888 * 120.00236 * 184.78597 * 15 13 12 17 17 N 1.29524 * 125.26748 * 179.71825 * 16 15 13 18 18 C 1.33671 * 115.65475 * 179.85881 * 17 16 15 19 19 C 1.47197 * 122.50003 * 180.20853 * 18 17 16 20 20 N 1.34777 * 119.99720 * 0.24200 * 19 18 17 21 21 O 1.21644 * 119.99949 * 180.24027 * 19 18 17 22 22 C 1.34865 * 114.99733 * 0.43171 * 18 17 16 23 23 S 1.70977 * 109.20651 * 359.77522 * 22 18 17 24 24 C 1.46930 * 118.73864 * 306.64231 * 12 11 10 25 25 C 1.52764 * 109.00656 * 53.30792 * 24 12 11 26 26 H 0.97003 * 120.00200 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46558 * 299.98183 * 9 7 2 28 28 H 1.08991 * 109.49727 * 58.68086 * 10 9 7 29 29 H 1.09002 * 109.52198 * 298.59449 * 10 9 7 30 30 H 1.09005 * 109.58689 * 294.84520 * 11 10 9 31 31 H 1.09004 * 109.70550 * 174.49245 * 11 10 9 32 32 H 0.97001 * 119.99842 * 4.78485 * 15 13 12 33 33 H 0.96996 * 120.00089 * 0.02562 * 20 19 18 34 34 H 0.96999 * 119.99683 * 180.02562 * 20 19 18 35 35 H 1.08006 * 125.40115 * 179.79712 * 22 18 17 36 36 H 1.08995 * 109.58741 * 173.14086 * 24 12 11 37 37 H 1.09003 * 109.58737 * 293.57367 * 24 12 11 38 38 H 1.08997 * 109.56770 * 185.55418 * 25 24 12 39 39 H 1.09003 * 109.38528 * 65.51300 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2460 -3.6621 0.0027 11 6 1.4769 -4.9865 0.0384 12 7 0.5228 -5.0097 -1.0786 13 6 0.5127 -6.0361 -1.9520 14 8 1.3583 -6.9064 -1.8770 15 7 -0.4315 -6.0948 -2.9119 16 6 -0.5031 -7.2010 -3.7488 17 7 -1.3689 -7.3659 -4.6979 18 6 -1.2605 -8.5051 -5.3887 19 6 -2.1624 -8.8443 -6.5014 20 7 -3.1402 -7.9891 -6.8609 21 8 -2.0253 -9.8963 -7.0965 22 6 -0.2659 -9.3227 -4.9870 23 16 0.5634 -8.5989 -3.6787 24 6 -0.4162 -3.8896 -1.2290 25 6 0.3703 -2.5801 -1.2473 26 1 -0.4850 0.8401 -0.0004 27 1 0.6252 -2.5563 0.8922 28 1 2.8883 -3.5906 0.8804 29 1 2.8564 -3.6201 -0.8993 30 1 0.9373 -5.0704 0.9818 31 1 2.1739 -5.8190 -0.0591 32 1 -1.0610 -5.3646 -3.0184 33 1 -3.2493 -7.1501 -6.3866 34 1 -3.7348 -8.2128 -7.5939 35 1 -0.0304 -10.2824 -5.4229 36 1 -0.9663 -3.9969 -2.1638 37 1 -1.1133 -3.8821 -0.3910 38 1 -0.3222 -1.7384 -1.2592 39 1 0.9980 -2.5475 -2.1378 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413672123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:49 Heat of formation + Delta-G solvation = -17.882718 kcal Electronic energy + Delta-G solvation = -24604.300350 eV Core-core repulsion = 20866.791169 eV Total energy + Delta-G solvation = -3737.509181 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87964 -40.23700 -38.50059 -37.32927 -35.03435 -33.79523 -33.71157 -31.46053 -30.36039 -29.83309 -26.55047 -25.69085 -23.72265 -22.81910 -22.16243 -21.19568 -20.19423 -19.25007 -18.31587 -17.88159 -17.59025 -16.98553 -16.38643 -16.06351 -15.92122 -15.45379 -15.14567 -14.63363 -14.35560 -14.10192 -13.98388 -13.47816 -13.28034 -13.02509 -12.84489 -12.60887 -12.07795 -11.81548 -11.47866 -11.15968 -11.02854 -10.76482 -10.57351 -10.52769 -10.33458 -10.11587 -10.05929 -9.90350 -9.75284 -9.50025 -9.33875 -9.13286 -8.62135 -8.47207 -8.12685 -6.14674 -4.20697 0.50098 0.91266 1.66980 1.73800 2.19296 2.94739 3.21466 3.29224 3.30445 3.32329 3.42069 3.66080 4.27386 4.32186 5.05016 5.13359 5.19025 5.24347 5.47645 5.49915 5.68788 5.81813 5.93174 6.03178 6.05100 6.15866 6.35724 6.45973 6.53566 6.72477 6.88154 6.92475 7.02729 7.12532 7.36566 7.52883 7.71366 7.76483 7.89727 8.04567 8.22582 8.27087 8.82709 9.45333 10.91021 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.002681 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.105535 B =10442.755514 C =11264.585569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.049 3.951 10 C -0.125 4.125 11 C 0.127 3.873 12 N -0.599 5.599 13 C 0.704 3.296 14 O -0.571 6.571 15 N -0.635 5.635 16 C 0.287 3.713 17 N -0.496 5.496 18 C 0.020 3.980 19 C 0.603 3.397 20 N -0.839 5.839 21 O -0.544 6.544 22 C -0.274 4.274 23 S 0.291 5.709 24 C 0.104 3.896 25 C -0.126 4.126 26 H 0.261 0.739 27 H 0.029 0.971 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.422 0.578 33 H 0.411 0.589 34 H 0.403 0.597 35 H 0.186 0.814 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 -13.020 -6.605 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.030 3.970 10 C -0.163 4.163 11 C 0.005 3.995 12 N -0.333 5.333 13 C 0.404 3.596 14 O -0.449 6.449 15 N -0.290 5.290 16 C -0.084 4.084 17 N -0.221 5.221 18 C -0.115 4.115 19 C 0.385 3.615 20 N -0.401 5.401 21 O -0.421 6.421 22 C -0.418 4.418 23 S 0.543 5.457 24 C -0.018 4.018 25 C -0.164 4.164 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.264 0.736 33 H 0.241 0.759 34 H 0.234 0.766 35 H 0.204 0.796 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.540 -13.981 -6.145 15.677 hybrid contribution -0.962 1.713 -0.970 2.191 sum -4.502 -12.268 -7.115 14.879 Atomic orbital electron populations 1.69810 1.05861 1.26631 1.50802 1.24957 0.94890 0.99140 0.94942 0.86603 0.79935 0.83403 0.78134 1.20717 1.21212 1.19914 1.21183 0.93011 0.90444 1.50451 0.92593 1.18637 0.92627 0.91901 0.93811 1.22045 0.98973 0.93907 1.01419 1.21781 0.91043 1.00260 0.86432 1.47483 1.38134 1.19737 1.27959 1.15716 0.80994 0.83575 0.79300 1.90812 1.39008 1.40811 1.74299 1.42055 1.35604 1.19383 1.31996 1.23981 0.96454 0.93912 0.94033 1.66981 1.25604 1.21190 1.08326 1.19614 1.00023 0.91439 1.00417 1.17151 0.79697 0.83137 0.81488 1.43629 1.34286 1.23643 1.38583 1.90846 1.72167 1.24440 1.54626 1.26964 1.02141 1.07093 1.05625 1.85171 1.28454 1.07321 1.24756 1.22018 0.91769 0.87772 1.00238 1.21994 1.00253 0.94157 1.00010 0.92880 0.95247 0.91649 0.92702 0.91581 0.89717 0.73597 0.75898 0.76616 0.79645 0.92361 0.90982 0.87358 0.94031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.11 11.31 55.43 0.63 -22.48 16 2 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 3 Si 0.89 19.99 29.54 -169.99 -5.02 14.96 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.51 -12.81 8.56 -34.44 -0.29 -13.10 16 8 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.05 2.07 -91.73 -0.19 0.86 16 10 C -0.13 -2.28 5.30 -26.61 -0.14 -2.42 16 11 C 0.13 1.98 6.44 -3.71 -0.02 1.95 16 12 N -0.60 -9.18 2.98 -178.76 -0.53 -9.71 16 13 C 0.70 10.66 8.26 -86.92 -0.72 9.94 16 14 O -0.57 -9.55 13.28 5.30 0.07 -9.48 16 15 N -0.64 -8.25 5.31 -16.30 -0.09 -8.34 16 16 C 0.29 3.80 8.36 -87.54 -0.73 3.07 16 17 N -0.50 -6.31 10.12 -10.51 -0.11 -6.42 16 18 C 0.02 0.26 6.66 -84.62 -0.56 -0.31 16 19 C 0.60 7.53 8.06 -12.62 -0.10 7.43 16 20 N -0.84 -7.32 8.87 30.38 0.27 -7.05 16 21 O -0.54 -8.27 17.49 5.24 0.09 -8.18 16 22 C -0.27 -3.25 10.54 29.54 0.31 -2.94 16 23 S 0.29 3.56 20.30 -107.50 -2.18 1.38 16 24 C 0.10 1.58 6.36 -3.93 -0.02 1.55 16 25 C -0.13 -2.48 5.14 -26.83 -0.14 -2.61 16 26 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.29 6.99 -51.93 -0.36 0.93 16 32 H 0.42 4.73 6.31 -40.82 -0.26 4.47 16 33 H 0.41 3.12 8.31 -40.82 -0.34 2.79 16 34 H 0.40 2.67 8.93 -40.82 -0.36 2.31 16 35 H 0.19 1.93 7.99 -52.48 -0.42 1.51 16 36 H 0.06 0.72 5.65 -51.93 -0.29 0.43 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.11 2.42 6.03 -51.93 -0.31 2.10 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -29.11 336.67 -8.93 -38.05 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.43 Total: 7.29 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.71 Total: 4.90 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.17 Total: -53.99 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.16 Total: -17.66 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -2.18 Total: 1.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.11 -8.93 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413672123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.164 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds