Wall clock time and date at job start Tue Mar 31 2020 13:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99846 * 2 1 4 4 H 1.48498 * 109.46931 * 270.00067 * 3 2 1 5 5 H 1.48505 * 109.46882 * 29.99614 * 3 2 1 6 6 H 1.48493 * 109.47282 * 149.99613 * 3 2 1 7 7 C 1.37879 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.53039 * 109.46019 * 180.02562 * 9 7 2 11 11 C 1.53190 * 109.31140 * 178.63300 * 10 9 7 12 12 N 1.46924 * 108.77994 * 54.63435 * 11 10 9 13 13 C 1.34774 * 120.63248 * 126.36755 * 12 11 10 14 14 O 1.21579 * 120.00215 * 354.77056 * 13 12 11 15 15 N 1.34776 * 120.00263 * 175.04538 * 13 12 11 16 16 C 1.38888 * 120.00236 * 184.78597 * 15 13 12 17 17 N 1.29524 * 125.26748 * 179.71825 * 16 15 13 18 18 C 1.33671 * 115.65475 * 179.85881 * 17 16 15 19 19 C 1.47197 * 122.50003 * 180.20853 * 18 17 16 20 20 N 1.34777 * 119.99720 * 0.24200 * 19 18 17 21 21 O 1.21644 * 119.99949 * 180.24027 * 19 18 17 22 22 C 1.34865 * 114.99733 * 0.43171 * 18 17 16 23 23 S 1.70977 * 109.20651 * 359.77522 * 22 18 17 24 24 C 1.46930 * 118.73864 * 306.64231 * 12 11 10 25 25 C 1.52764 * 109.00656 * 53.30792 * 24 12 11 26 26 H 0.97003 * 120.00200 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46558 * 299.98183 * 9 7 2 28 28 H 1.08991 * 109.49727 * 58.68086 * 10 9 7 29 29 H 1.09002 * 109.52198 * 298.59449 * 10 9 7 30 30 H 1.09005 * 109.58689 * 294.84520 * 11 10 9 31 31 H 1.09004 * 109.70550 * 174.49245 * 11 10 9 32 32 H 0.97001 * 119.99842 * 4.78485 * 15 13 12 33 33 H 0.96996 * 120.00089 * 0.02562 * 20 19 18 34 34 H 0.96999 * 119.99683 * 180.02562 * 20 19 18 35 35 H 1.08006 * 125.40115 * 179.79712 * 22 18 17 36 36 H 1.08995 * 109.58741 * 173.14086 * 24 12 11 37 37 H 1.09003 * 109.58737 * 293.57367 * 24 12 11 38 38 H 1.08997 * 109.56770 * 185.55418 * 25 24 12 39 39 H 1.09003 * 109.38528 * 65.51300 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2460 -3.6621 0.0027 11 6 1.4769 -4.9865 0.0384 12 7 0.5228 -5.0097 -1.0786 13 6 0.5127 -6.0361 -1.9520 14 8 1.3583 -6.9064 -1.8770 15 7 -0.4315 -6.0948 -2.9119 16 6 -0.5031 -7.2010 -3.7488 17 7 -1.3689 -7.3659 -4.6979 18 6 -1.2605 -8.5051 -5.3887 19 6 -2.1624 -8.8443 -6.5014 20 7 -3.1402 -7.9891 -6.8609 21 8 -2.0253 -9.8963 -7.0965 22 6 -0.2659 -9.3227 -4.9870 23 16 0.5634 -8.5989 -3.6787 24 6 -0.4162 -3.8896 -1.2290 25 6 0.3703 -2.5801 -1.2473 26 1 -0.4850 0.8401 -0.0004 27 1 0.6252 -2.5563 0.8922 28 1 2.8883 -3.5906 0.8804 29 1 2.8564 -3.6201 -0.8993 30 1 0.9373 -5.0704 0.9818 31 1 2.1739 -5.8190 -0.0591 32 1 -1.0610 -5.3646 -3.0184 33 1 -3.2493 -7.1501 -6.3866 34 1 -3.7348 -8.2128 -7.5939 35 1 -0.0304 -10.2824 -5.4229 36 1 -0.9663 -3.9969 -2.1638 37 1 -1.1133 -3.8821 -0.3910 38 1 -0.3222 -1.7384 -1.2592 39 1 0.9980 -2.5475 -2.1378 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413672123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:49 Heat of formation + Delta-G solvation = -38.026172 kcal Electronic energy + Delta-G solvation = -24605.173836 eV Core-core repulsion = 20866.791169 eV Total energy + Delta-G solvation = -3738.382667 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.01588 -41.25510 -39.53159 -38.68818 -36.15225 -35.37874 -34.64242 -33.05648 -31.77030 -30.88597 -28.12688 -26.73190 -25.15107 -24.17068 -23.38640 -22.36974 -21.36806 -20.46943 -19.44198 -19.04555 -18.47214 -18.29259 -17.97638 -17.18741 -16.86886 -16.71879 -16.39235 -16.18773 -15.36142 -15.29722 -15.07809 -14.92288 -14.56498 -14.48119 -14.16770 -14.02900 -13.30534 -13.22309 -12.93504 -12.81258 -12.47618 -12.21161 -12.13818 -11.98284 -11.61410 -11.42974 -11.29707 -11.06649 -10.99686 -10.79397 -10.75278 -10.47213 -10.38476 -9.82984 -9.23364 -8.07172 -6.18782 -0.47314 -0.05544 0.69464 0.73577 1.09991 1.41758 1.45400 1.52757 1.81149 2.31354 2.43509 2.45307 2.63922 3.20279 3.34139 4.00560 4.15956 4.20726 4.27445 4.34249 4.43842 4.54144 4.61003 4.69165 4.86837 4.93200 5.00736 5.11137 5.21691 5.36920 5.43039 5.63114 5.65926 5.79620 6.02189 6.12304 6.15816 6.40104 6.42316 6.60821 6.90931 7.05054 7.21667 7.49025 8.95982 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.002681 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.105535 B =10442.755514 C =11264.585569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.943 3.057 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.046 0.954 9 C 0.044 3.956 10 C -0.116 4.116 11 C 0.134 3.866 12 N -0.601 5.601 13 C 0.706 3.294 14 O -0.587 6.587 15 N -0.626 5.626 16 C 0.268 3.732 17 N -0.489 5.489 18 C 0.003 3.997 19 C 0.600 3.400 20 N -0.818 5.818 21 O -0.577 6.577 22 C -0.265 4.265 23 S 0.302 5.698 24 C 0.115 3.885 25 C -0.117 4.117 26 H 0.261 0.739 27 H 0.009 0.991 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.430 0.570 33 H 0.419 0.581 34 H 0.415 0.585 35 H 0.199 0.801 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.141 -13.712 -7.082 16.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.770 3.230 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.154 4.154 11 C 0.012 3.988 12 N -0.335 5.335 13 C 0.407 3.593 14 O -0.467 6.467 15 N -0.282 5.282 16 C -0.103 4.103 17 N -0.213 5.213 18 C -0.132 4.132 19 C 0.382 3.618 20 N -0.381 5.381 21 O -0.457 6.457 22 C -0.409 4.409 23 S 0.554 5.446 24 C -0.007 4.007 25 C -0.156 4.156 26 H 0.070 0.930 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.273 0.727 33 H 0.250 0.750 34 H 0.248 0.752 35 H 0.216 0.784 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -4.030 -14.648 -6.641 16.580 hybrid contribution -0.809 1.917 -0.845 2.245 sum -4.839 -12.731 -7.485 15.541 Atomic orbital electron populations 1.69914 1.06620 1.27044 1.51372 1.25565 0.95655 1.01682 0.95038 0.85792 0.78872 0.80391 0.77974 1.20573 1.21033 1.19832 1.21555 0.92923 0.92311 1.50238 0.93531 1.18622 0.93121 0.91906 0.93771 1.21884 0.98328 0.94226 1.00974 1.21679 0.91244 0.98605 0.87285 1.47405 1.38153 1.19896 1.28061 1.15688 0.81070 0.83213 0.79334 1.90805 1.39753 1.41342 1.74758 1.41821 1.35269 1.19651 1.31437 1.24106 0.97240 0.94370 0.94609 1.66947 1.25311 1.21083 1.07944 1.19782 1.00717 0.91756 1.00960 1.17185 0.80182 0.83103 0.81299 1.43492 1.33138 1.23137 1.38375 1.90831 1.73244 1.25851 1.55761 1.27152 1.01410 1.07352 1.05010 1.85168 1.28023 1.06819 1.24547 1.21853 0.91127 0.85362 1.02363 1.21732 0.99544 0.95959 0.98323 0.92978 0.97301 0.91376 0.93866 0.90166 0.88936 0.72660 0.74985 0.75237 0.78389 0.89204 0.90195 0.89990 0.95336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.58 11.31 21.45 0.24 -47.34 16 2 C 0.02 1.01 5.30 84.65 0.45 1.46 16 3 Si 0.94 41.15 29.54 68.60 2.03 43.18 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.53 -26.94 8.56 25.60 0.22 -26.72 16 8 H 0.05 2.38 7.74 -2.91 -0.02 2.35 16 9 C 0.04 1.93 2.07 -11.51 -0.02 1.90 16 10 C -0.12 -4.17 5.30 30.67 0.16 -4.01 16 11 C 0.13 3.96 6.44 86.36 0.56 4.52 16 12 N -0.60 -17.31 2.98 -837.74 -2.50 -19.81 16 13 C 0.71 19.95 8.26 179.06 1.48 21.43 16 14 O -0.59 -18.53 13.28 -3.96 -0.05 -18.58 16 15 N -0.63 -14.89 5.31 -323.76 -1.72 -16.61 16 16 C 0.27 6.54 8.36 179.27 1.50 8.04 16 17 N -0.49 -11.46 10.12 -187.16 -1.89 -13.35 16 18 C 0.00 0.06 6.66 40.44 0.27 0.33 16 19 C 0.60 14.08 8.06 86.60 0.70 14.78 16 20 N -0.82 -12.71 8.87 -176.03 -1.56 -14.27 16 21 O -0.58 -16.94 17.49 -4.17 -0.07 -17.02 16 22 C -0.27 -5.84 10.54 67.04 0.71 -5.13 16 23 S 0.30 6.88 20.30 -56.49 -1.15 5.73 16 24 C 0.11 3.29 6.36 86.22 0.55 3.84 16 25 C -0.12 -4.59 5.14 30.53 0.16 -4.43 16 26 H 0.26 13.13 8.31 -92.71 -0.77 12.36 16 27 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 2.17 8.14 -2.38 -0.02 2.16 16 31 H 0.09 2.64 6.99 -2.38 -0.02 2.63 16 32 H 0.43 8.53 6.31 -92.71 -0.58 7.95 16 33 H 0.42 5.44 8.31 -92.71 -0.77 4.67 16 34 H 0.41 4.69 8.93 -92.71 -0.83 3.86 16 35 H 0.20 3.78 7.99 -2.91 -0.02 3.76 16 36 H 0.09 2.00 5.65 -2.39 -0.01 1.99 16 37 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.08 3.69 6.03 -2.39 -0.01 3.68 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -61.95 336.67 -0.99 -62.95 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -1.04 Total: 19.10 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.72 Total: 16.01 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -7.43 Total: -111.37 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.13 Total: -35.60 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 6.88 SS G_CDS: -1.15 Total: 5.73 kcal Total: -61.95 -0.99 -62.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413672123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.920 kcal (2) G-P(sol) polarization free energy of solvation -61.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds