Wall clock time and date at job start Tue Mar 31 2020 13:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99658 * 90.00121 * 10 9 7 12 12 C 1.52998 * 109.47482 * 90.00117 * 11 10 9 13 13 C 1.52995 * 117.49809 * 243.62544 * 12 11 10 14 14 C 1.52998 * 117.50248 * 174.99612 * 12 11 10 15 15 C 1.34775 * 120.00337 * 269.99986 * 10 9 7 16 16 O 1.21568 * 120.00030 * 0.02562 * 15 10 9 17 17 N 1.34776 * 120.00093 * 180.02562 * 15 10 9 18 18 C 1.38371 * 119.99934 * 180.02562 * 17 15 10 19 19 N 1.30131 * 124.74257 * 0.02562 * 18 17 15 20 20 C 1.30874 * 117.28582 * 179.97438 * 19 18 17 21 21 C 1.36710 * 114.02476 * 0.02562 * 20 19 18 22 22 C 1.46309 * 126.11948 * 180.02562 * 21 20 19 23 23 N 1.34777 * 119.99951 * 179.97438 * 22 21 20 24 24 O 1.21745 * 120.00206 * 0.02562 * 22 21 20 25 25 S 1.70914 * 124.74214 * 179.72265 * 18 17 15 26 26 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.08998 * 109.46888 * 209.99779 * 11 10 9 30 30 H 1.08994 * 109.47490 * 329.99842 * 11 10 9 31 31 H 1.09008 * 115.54896 * 29.32623 * 12 11 10 32 32 H 1.09003 * 117.49829 * 359.97438 * 13 12 11 33 33 H 1.08998 * 117.50281 * 145.02177 * 13 12 11 34 34 H 1.08997 * 117.50012 * 214.97612 * 14 12 11 35 35 H 1.09000 * 117.49751 * 0.02562 * 14 12 11 36 36 H 0.97001 * 119.99930 * 359.97438 * 17 15 10 37 37 H 1.08002 * 122.98528 * 179.97438 * 20 19 18 38 38 H 0.97004 * 120.00237 * 0.02562 * 23 22 21 39 39 H 0.96999 * 119.99732 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6788 -4.1694 1.2693 12 6 1.7482 -5.3006 1.7110 13 6 0.9716 -5.1079 3.0151 14 6 2.1416 -6.0924 2.9597 15 6 2.6408 -4.1250 -1.1666 16 8 2.2463 -3.6627 -2.2195 17 7 3.5162 -5.1497 -1.1666 18 6 3.9662 -5.6753 -2.3649 19 7 3.6066 -5.2523 -3.5418 20 6 4.1244 -5.8567 -4.5807 21 6 4.9874 -6.8683 -4.2630 22 6 5.7117 -7.7140 -5.2122 23 7 6.5362 -8.6800 -4.7611 24 8 5.5704 -7.5444 -6.4095 25 16 5.0778 -6.9659 -2.5061 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 3.6883 -4.5595 1.1390 30 1 2.6866 -3.3878 2.0289 31 1 1.2534 -5.8438 0.9058 32 1 1.1241 -4.1754 3.5586 33 1 -0.0343 -5.5244 3.0682 34 1 1.9054 -7.1563 2.9762 35 1 3.0634 -5.8071 3.4668 36 1 3.8314 -5.5183 -0.3265 37 1 3.8902 -5.5814 -5.5984 38 1 6.6491 -8.8149 -3.8072 39 1 7.0167 -9.2404 -5.3904 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434749803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:58 Heat of formation + Delta-G solvation = 25.103747 kcal Electronic energy + Delta-G solvation = -24540.019310 eV Core-core repulsion = 20804.374162 eV Total energy + Delta-G solvation = -3735.645148 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.59904 -39.69687 -38.69181 -37.35469 -34.95543 -34.44660 -33.91874 -32.54738 -29.77538 -28.02985 -26.58756 -25.33574 -23.37777 -22.46968 -22.28718 -21.08154 -20.55663 -19.49919 -18.92393 -17.69022 -17.46413 -16.58117 -16.33209 -16.04951 -15.63440 -15.34050 -14.99232 -14.84464 -14.58883 -14.35942 -14.13391 -13.82507 -13.53748 -13.05641 -12.53936 -12.34194 -11.75392 -11.65303 -11.48505 -11.28947 -10.99816 -10.74786 -10.68103 -10.53809 -10.41192 -10.18933 -10.01227 -10.01013 -9.83827 -9.69100 -9.53850 -9.13487 -8.46334 -8.30355 -7.80445 -6.07874 -4.12940 0.24429 0.69626 1.37290 2.45760 2.74881 3.15327 3.28754 3.29993 3.35365 3.38708 3.70711 3.78359 4.01946 4.42184 4.54852 4.81688 4.85452 4.92530 5.05423 5.20125 5.26874 5.40254 5.52892 5.60944 5.82206 5.84367 5.95761 6.14179 6.18255 6.29722 6.44938 6.47478 6.97829 7.13242 7.36076 7.44093 7.77209 7.88932 7.97898 8.16807 8.34311 8.85727 9.04496 9.52278 11.00083 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.003542 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.041834 B = 7903.941214 C = 9616.797468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.263 3.737 10 N -0.597 5.597 11 C 0.140 3.860 12 C -0.175 4.175 13 C -0.169 4.169 14 C -0.182 4.182 15 C 0.687 3.313 16 O -0.511 6.511 17 N -0.641 5.641 18 C 0.337 3.663 19 N -0.483 5.483 20 C 0.180 3.820 21 C -0.350 4.350 22 C 0.613 3.387 23 N -0.853 5.853 24 O -0.537 6.537 25 S 0.129 5.871 26 H 0.265 0.735 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.416 0.584 37 H 0.191 0.809 38 H 0.398 0.602 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.233 -19.155 3.569 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.570 4.570 8 H 0.075 0.925 9 C 0.144 3.856 10 N -0.333 5.333 11 C 0.015 3.985 12 C -0.195 4.195 13 C -0.206 4.206 14 C -0.219 4.219 15 C 0.386 3.614 16 O -0.380 6.380 17 N -0.295 5.295 18 C -0.032 4.032 19 N -0.203 5.203 20 C 0.020 3.980 21 C -0.476 4.476 22 C 0.399 3.601 23 N -0.417 5.417 24 O -0.415 6.415 25 S 0.380 5.620 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.255 0.745 37 H 0.208 0.792 38 H 0.226 0.774 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 10.596 -18.454 2.929 21.481 hybrid contribution 0.632 0.697 0.026 0.941 sum 11.229 -17.758 2.955 21.217 Atomic orbital electron populations 1.69914 1.05968 1.27231 1.50043 1.24904 0.94867 0.99161 0.94943 0.86564 0.79544 0.82717 0.78624 1.20144 1.21138 1.20283 1.21388 0.93326 0.90650 1.51612 0.92518 1.19299 0.86552 0.80894 0.98818 1.47642 1.47715 1.36228 1.01698 1.21039 0.94405 0.94936 0.88133 1.22950 1.03518 1.00788 0.92209 1.22992 0.96266 1.01117 1.00235 1.22955 0.99938 0.97396 1.01626 1.16043 0.79887 0.79550 0.85899 1.91062 1.57736 1.59797 1.29363 1.42831 1.46082 1.35695 1.04914 1.23838 0.94887 0.94267 0.90178 1.66530 1.27961 1.29733 0.96075 1.22491 0.88659 0.87869 0.99027 1.25334 1.16227 1.11570 0.94456 1.16540 0.77866 0.78930 0.86793 1.43691 1.48739 1.37606 1.11677 1.90893 1.65064 1.70256 1.15327 1.83454 1.42969 1.32996 1.02612 0.92578 0.94340 0.93636 0.92128 0.88867 0.87863 0.88254 0.88996 0.89023 0.88713 0.74517 0.79214 0.77377 0.76234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.26 6.58 5.16 -5.19 -0.03 6.55 16 10 N -0.60 -11.82 2.46 -180.81 -0.44 -12.26 16 11 C 0.14 1.99 5.45 -4.04 -0.02 1.97 16 12 C -0.18 -2.14 6.01 -90.62 -0.54 -2.68 16 13 C -0.17 -1.95 10.18 -26.73 -0.27 -2.22 16 14 C -0.18 -1.68 10.25 -26.73 -0.27 -1.96 16 15 C 0.69 14.05 8.24 -86.92 -0.72 13.33 16 16 O -0.51 -13.08 14.52 5.31 0.08 -13.00 16 17 N -0.64 -9.63 5.25 -17.55 -0.09 -9.72 16 18 C 0.34 5.04 7.98 -87.55 -0.70 4.34 16 19 N -0.48 -8.61 8.56 -14.66 -0.13 -8.74 16 20 C 0.18 2.68 11.15 -18.51 -0.21 2.48 16 21 C -0.35 -4.33 6.50 -36.89 -0.24 -4.57 16 22 C 0.61 7.28 8.05 -13.02 -0.10 7.17 16 23 N -0.85 -6.16 8.87 30.18 0.27 -5.89 16 24 O -0.54 -8.33 17.70 5.15 0.09 -8.24 16 25 S 0.13 1.27 22.33 -107.50 -2.40 -1.13 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 28 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 29 H 0.06 0.68 6.36 -51.93 -0.33 0.34 16 30 H 0.09 1.41 7.80 -51.93 -0.41 1.00 16 31 H 0.10 1.37 8.14 -51.92 -0.42 0.95 16 32 H 0.10 1.18 8.03 -51.93 -0.42 0.77 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.42 4.54 6.55 -40.82 -0.27 4.28 16 37 H 0.19 2.61 8.06 -52.49 -0.42 2.18 16 38 H 0.40 1.96 8.00 -40.82 -0.33 1.63 16 39 H 0.41 2.23 8.93 -40.82 -0.36 1.86 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -36.39 355.55 -9.65 -46.04 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.57 Total: 5.11 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -3.53 Total: 11.18 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.34 Total: -61.92 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.17 Total: -21.24 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.40 Total: -1.13 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.39 -9.65 -46.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434749803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.142 kcal (2) G-P(sol) polarization free energy of solvation -36.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds