Wall clock time and date at job start Tue Mar 31 2020 13:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99658 * 90.00121 * 10 9 7 12 12 C 1.52998 * 109.47482 * 90.00117 * 11 10 9 13 13 C 1.52995 * 117.49809 * 243.62544 * 12 11 10 14 14 C 1.52998 * 117.50248 * 174.99612 * 12 11 10 15 15 C 1.34775 * 120.00337 * 269.99986 * 10 9 7 16 16 O 1.21568 * 120.00030 * 0.02562 * 15 10 9 17 17 N 1.34776 * 120.00093 * 180.02562 * 15 10 9 18 18 C 1.38371 * 119.99934 * 180.02562 * 17 15 10 19 19 N 1.30131 * 124.74257 * 0.02562 * 18 17 15 20 20 C 1.30874 * 117.28582 * 179.97438 * 19 18 17 21 21 C 1.36710 * 114.02476 * 0.02562 * 20 19 18 22 22 C 1.46309 * 126.11948 * 180.02562 * 21 20 19 23 23 N 1.34777 * 119.99951 * 179.97438 * 22 21 20 24 24 O 1.21745 * 120.00206 * 0.02562 * 22 21 20 25 25 S 1.70914 * 124.74214 * 179.72265 * 18 17 15 26 26 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.08998 * 109.46888 * 209.99779 * 11 10 9 30 30 H 1.08994 * 109.47490 * 329.99842 * 11 10 9 31 31 H 1.09008 * 115.54896 * 29.32623 * 12 11 10 32 32 H 1.09003 * 117.49829 * 359.97438 * 13 12 11 33 33 H 1.08998 * 117.50281 * 145.02177 * 13 12 11 34 34 H 1.08997 * 117.50012 * 214.97612 * 14 12 11 35 35 H 1.09000 * 117.49751 * 0.02562 * 14 12 11 36 36 H 0.97001 * 119.99930 * 359.97438 * 17 15 10 37 37 H 1.08002 * 122.98528 * 179.97438 * 20 19 18 38 38 H 0.97004 * 120.00237 * 0.02562 * 23 22 21 39 39 H 0.96999 * 119.99732 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6788 -4.1694 1.2693 12 6 1.7482 -5.3006 1.7110 13 6 0.9716 -5.1079 3.0151 14 6 2.1416 -6.0924 2.9597 15 6 2.6408 -4.1250 -1.1666 16 8 2.2463 -3.6627 -2.2195 17 7 3.5162 -5.1497 -1.1666 18 6 3.9662 -5.6753 -2.3649 19 7 3.6066 -5.2523 -3.5418 20 6 4.1244 -5.8567 -4.5807 21 6 4.9874 -6.8683 -4.2630 22 6 5.7117 -7.7140 -5.2122 23 7 6.5362 -8.6800 -4.7611 24 8 5.5704 -7.5444 -6.4095 25 16 5.0778 -6.9659 -2.5061 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 3.6883 -4.5595 1.1390 30 1 2.6866 -3.3878 2.0289 31 1 1.2534 -5.8438 0.9058 32 1 1.1241 -4.1754 3.5586 33 1 -0.0343 -5.5244 3.0682 34 1 1.9054 -7.1563 2.9762 35 1 3.0634 -5.8071 3.4668 36 1 3.8314 -5.5183 -0.3265 37 1 3.8902 -5.5814 -5.5984 38 1 6.6491 -8.8149 -3.8072 39 1 7.0167 -9.2404 -5.3904 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434749803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:58 Heat of formation + Delta-G solvation = -2.565486 kcal Electronic energy + Delta-G solvation = -24541.219138 eV Core-core repulsion = 20804.374162 eV Total energy + Delta-G solvation = -3736.844976 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.90986 -40.83808 -39.82518 -38.42986 -36.40464 -35.98151 -34.79915 -34.53605 -30.94451 -29.76723 -27.89118 -26.73187 -24.98769 -23.72255 -23.15281 -22.25458 -21.64273 -20.67847 -20.06112 -18.96278 -18.60889 -18.44605 -17.52988 -17.07952 -16.95777 -16.71838 -16.22000 -16.11895 -15.94973 -15.52896 -15.38730 -14.94545 -14.77571 -14.55694 -14.28225 -13.74333 -13.34773 -12.96908 -12.72811 -12.67081 -12.56707 -12.27276 -12.21683 -12.07297 -11.74808 -11.67730 -11.38966 -11.23886 -10.83501 -10.81823 -10.62653 -10.48353 -10.45126 -9.65230 -9.23800 -8.21457 -6.35700 -0.83524 -0.32959 0.33949 1.35310 1.36906 1.41417 1.46768 1.52628 2.07433 2.27083 2.38553 2.45638 2.67215 2.96437 3.08900 3.42593 3.85543 3.96096 3.99830 4.16207 4.20034 4.33956 4.47073 4.68253 4.78138 4.88384 4.92729 5.09219 5.10743 5.19857 5.28205 5.35555 5.52116 5.59030 5.80191 5.84084 6.05687 6.24992 6.58848 6.72721 6.96153 7.18071 7.30617 7.53024 8.85270 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.003542 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.041834 B = 7903.941214 C = 9616.797468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.964 3.036 4 H -0.282 1.282 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.284 3.716 10 N -0.602 5.602 11 C 0.136 3.864 12 C -0.191 4.191 13 C -0.189 4.189 14 C -0.139 4.139 15 C 0.689 3.311 16 O -0.576 6.576 17 N -0.625 5.625 18 C 0.284 3.716 19 N -0.536 5.536 20 C 0.150 3.850 21 C -0.350 4.350 22 C 0.612 3.388 23 N -0.826 5.826 24 O -0.577 6.577 25 S 0.286 5.714 26 H 0.267 0.733 27 H 0.032 0.968 28 H -0.005 1.005 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.436 0.564 37 H 0.184 0.816 38 H 0.413 0.587 39 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.539 -21.712 5.692 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.208 1.208 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.582 4.582 8 H 0.072 0.928 9 C 0.162 3.838 10 N -0.336 5.336 11 C 0.014 3.986 12 C -0.210 4.210 13 C -0.226 4.226 14 C -0.176 4.176 15 C 0.387 3.613 16 O -0.450 6.450 17 N -0.281 5.281 18 C -0.082 4.082 19 N -0.257 5.257 20 C -0.011 4.011 21 C -0.476 4.476 22 C 0.396 3.604 23 N -0.390 5.390 24 O -0.459 6.459 25 S 0.538 5.462 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.014 0.986 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.279 0.721 37 H 0.201 0.799 38 H 0.244 0.756 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 13.992 -21.125 5.146 25.856 hybrid contribution -0.293 1.285 -0.658 1.473 sum 13.699 -19.840 4.488 24.524 Atomic orbital electron populations 1.70037 1.07489 1.28181 1.50910 1.25794 0.95736 1.02844 0.94491 0.85528 0.78357 0.78370 0.78900 1.20802 1.20443 1.18158 1.21687 0.93292 0.91929 1.51298 0.92812 1.18652 0.86907 0.82311 0.95920 1.47427 1.46970 1.35334 1.03871 1.21330 0.96744 0.95305 0.85235 1.22742 1.04324 1.01191 0.92792 1.23062 0.97512 1.02105 0.99948 1.23076 0.99244 0.97760 0.97545 1.16164 0.80067 0.80150 0.84887 1.91014 1.60167 1.62198 1.31592 1.42207 1.45225 1.34537 1.06142 1.24109 0.97593 0.97096 0.89369 1.66431 1.29668 1.31864 0.97720 1.22368 0.90609 0.89585 0.98531 1.25724 1.14357 1.10051 0.97485 1.16544 0.78279 0.79515 0.86014 1.43449 1.46810 1.35830 1.12955 1.90884 1.66472 1.71481 1.17045 1.82754 1.37821 1.27431 0.98182 0.92423 0.95042 0.98640 0.88271 0.89773 0.89095 0.89098 0.89056 0.86947 0.86595 0.72121 0.79949 0.75580 0.74668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 2 C 0.01 0.61 5.46 84.66 0.46 1.07 16 3 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 7 C -0.54 -31.00 9.39 25.60 0.24 -30.76 16 8 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 9 C 0.28 15.06 5.16 85.63 0.44 15.50 16 10 N -0.60 -24.65 2.46 -844.23 -2.07 -26.72 16 11 C 0.14 3.78 5.45 86.38 0.47 4.25 16 12 C -0.19 -4.43 6.01 -10.80 -0.06 -4.49 16 13 C -0.19 -4.17 10.18 30.60 0.31 -3.86 16 14 C -0.14 -2.07 10.25 30.60 0.31 -1.76 16 15 C 0.69 29.23 8.24 179.06 1.47 30.70 16 16 O -0.58 -31.55 14.52 -3.93 -0.06 -31.61 16 17 N -0.62 -18.35 5.25 -327.71 -1.72 -20.07 16 18 C 0.28 8.28 7.98 179.28 1.43 9.71 16 19 N -0.54 -19.82 8.56 -200.28 -1.71 -21.53 16 20 C 0.15 4.60 11.15 84.48 0.94 5.54 16 21 C -0.35 -8.06 6.50 24.01 0.16 -7.90 16 22 C 0.61 13.24 8.05 86.34 0.69 13.94 16 23 N -0.83 -8.81 8.87 -176.63 -1.57 -10.37 16 24 O -0.58 -17.56 17.70 -4.49 -0.08 -17.64 16 25 S 0.29 4.55 22.33 -56.49 -1.26 3.28 16 26 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 27 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 28 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 29 H 0.10 1.92 6.36 -2.39 -0.02 1.91 16 30 H 0.08 2.49 7.80 -2.39 -0.02 2.48 16 31 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.09 2.14 8.03 -2.39 -0.02 2.12 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.44 8.40 6.55 -92.71 -0.61 7.79 16 37 H 0.18 5.51 8.06 -2.91 -0.02 5.49 16 38 H 0.41 1.97 8.00 -92.71 -0.74 1.23 16 39 H 0.42 3.05 8.93 -92.71 -0.83 2.22 16 Total: -1.00 -87.21 355.55 -0.33 -87.53 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -1.04 Total: 13.88 kcal Atomic # 6 Polarization: 25.06 SS G_CDS: 6.87 Total: 31.94 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -6.79 Total: -134.41 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.14 Total: -49.25 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.26 Total: 3.28 kcal Total: -87.21 -0.33 -87.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434749803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.968 kcal (2) G-P(sol) polarization free energy of solvation -87.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds