Wall clock time and date at job start Tue Mar 31 2020 13:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38714 * 119.70131 * 2 1 4 4 C 1.37723 * 119.98396 * 180.02562 * 3 2 1 5 5 C 1.39272 * 120.20031 * 0.05206 * 4 3 2 6 6 S 1.76188 * 131.18023 * 179.97438 * 5 4 3 7 7 C 1.75812 * 90.44736 * 180.02562 * 6 5 4 8 8 N 1.38117 * 124.81874 * 180.02562 * 7 6 5 9 9 C 1.39804 * 119.99575 * 354.36007 * 8 7 6 10 10 C 1.39336 * 119.94765 * 142.92518 * 9 8 7 11 11 C 1.38478 * 120.41971 * 179.97438 * 10 9 8 12 12 C 1.37689 * 120.33097 * 0.26559 * 11 10 9 13 13 C 1.40757 * 119.88560 * 359.44232 * 12 11 10 14 14 C 1.41409 * 120.20550 * 180.31022 * 13 12 11 15 15 H 1.07995 * 119.99842 * 150.31582 * 14 13 12 16 16 C 1.39931 * 119.99911 * 330.31887 * 14 13 12 17 17 N 1.30837 * 120.00151 * 346.83697 * 16 14 13 18 18 Si 1.86797 * 119.99822 * 166.84111 * 16 14 13 19 19 H 1.48504 * 109.47225 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47108 * 120.00128 * 18 16 14 21 21 H 1.48500 * 109.47080 * 239.99816 * 18 16 14 22 22 C 1.38274 * 119.95269 * 322.89218 * 9 8 7 23 23 N 1.28895 * 110.36179 * 0.26332 * 7 6 5 24 24 C 1.34784 * 117.88711 * 359.50608 * 23 7 6 25 25 C 1.37199 * 119.70037 * 180.02562 * 2 1 3 26 26 C 1.50699 * 119.78179 * 359.97438 * 25 2 1 27 27 H 1.08992 * 109.46998 * 269.97927 * 1 2 3 28 28 H 1.09004 * 109.47057 * 29.98167 * 1 2 3 29 29 H 1.09005 * 109.46924 * 149.97515 * 1 2 3 30 30 H 1.07997 * 120.01282 * 0.02658 * 3 2 1 31 31 H 1.07990 * 119.90265 * 180.02562 * 4 3 2 32 32 H 0.97000 * 120.00118 * 174.35782 * 8 7 6 33 33 H 1.07993 * 119.78973 * 359.97052 * 10 9 8 34 34 H 1.08007 * 119.83176 * 179.97438 * 11 10 9 35 35 H 1.07996 * 120.05901 * 179.70644 * 12 11 10 36 36 H 0.96999 * 119.99709 * 180.02562 * 17 16 14 37 37 H 1.07996 * 120.16377 * 359.97438 * 22 9 8 38 38 H 1.09001 * 109.47566 * 269.98266 * 26 25 2 39 39 H 1.09007 * 109.47183 * 29.97889 * 26 25 2 40 40 H 1.08993 * 109.47344 * 149.98122 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.2049 0.0000 4 6 3.5715 1.2117 -0.0005 5 6 4.2780 0.0115 -0.0022 6 16 6.0093 -0.3156 -0.0038 7 6 5.6964 -2.0456 -0.0059 8 7 6.6719 -3.0234 -0.0074 9 6 8.0185 -2.6671 -0.1263 10 6 8.9893 -3.3693 0.5850 11 6 10.3260 -3.0250 0.4741 12 6 10.7101 -1.9806 -0.3367 13 6 9.7412 -1.2661 -1.0661 14 6 10.1288 -0.1965 -1.9060 15 1 9.5485 0.0362 -2.7866 16 6 11.2643 0.5603 -1.5962 17 7 11.8172 0.4567 -0.4149 18 14 11.9906 1.7187 -2.8690 19 1 11.1858 1.6520 -4.1153 20 1 11.9736 3.1069 -2.3418 21 1 13.3900 1.3175 -3.1619 22 6 8.3852 -1.6188 -0.9501 23 7 4.4275 -2.2719 -0.0109 24 6 3.5977 -1.2098 -0.0032 25 6 2.1868 -1.1918 -0.0005 26 6 1.4215 -2.4900 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6497 2.1375 0.0004 31 1 4.1052 2.1505 -0.0001 32 1 6.4226 -3.9573 0.0741 33 1 8.6974 -4.1873 1.2269 34 1 11.0705 -3.5756 1.0302 35 1 11.7533 -1.7128 -0.4163 36 1 12.6041 0.9817 -0.2000 37 1 7.6337 -1.0744 -1.5026 38 1 1.2376 -2.8034 1.0271 39 1 0.4699 -2.3508 -0.5137 40 1 2.0033 -3.2547 -0.5150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559191866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:27 Heat of formation + Delta-G solvation = 67.303016 kcal Electronic energy + Delta-G solvation = -23444.621626 eV Core-core repulsion = 20121.655639 eV Total energy + Delta-G solvation = -3322.965987 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.09920 -38.57030 -37.04119 -35.01472 -33.36541 -33.03020 -30.63697 -30.06731 -28.23658 -26.88817 -26.26992 -25.51955 -23.63043 -21.64678 -21.39663 -20.79405 -19.86582 -18.20249 -17.19054 -16.72709 -16.09163 -15.56889 -15.14773 -14.93656 -14.77093 -14.62329 -14.17326 -13.97030 -13.33831 -13.18266 -13.02705 -12.73512 -12.66315 -12.41405 -12.19417 -12.16593 -11.68021 -11.60171 -11.38130 -11.28770 -11.23291 -10.81732 -10.62708 -10.40035 -10.08340 -9.98929 -9.62863 -9.32998 -9.26366 -9.23492 -7.99178 -7.67485 -7.59216 -6.88623 -6.81298 -4.54616 0.89144 1.34187 1.46764 2.14525 2.48698 2.67429 2.94695 3.02789 3.07873 3.09715 3.32208 3.86101 3.90175 4.48223 4.63872 4.85444 4.98262 5.12969 5.36727 5.44463 5.46658 5.49020 5.55375 5.75738 5.76900 5.90169 5.92337 6.05104 6.16152 6.27200 6.37262 6.41094 6.64411 6.69638 6.72843 6.77328 6.84767 6.96787 7.08167 7.41142 7.47189 7.70981 7.84643 7.88675 8.03297 8.26783 8.46543 8.73380 8.75602 10.08663 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.003443 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.188807 B = 8129.773056 C = 9448.290733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.076 4.076 3 C -0.129 4.129 4 C -0.059 4.059 5 C -0.226 4.226 6 S 0.112 5.888 7 C 0.378 3.622 8 N -0.620 5.620 9 C 0.155 3.845 10 C -0.250 4.250 11 C -0.086 4.086 12 C -0.161 4.161 13 C 0.134 3.866 14 C -0.458 4.458 15 H 0.081 0.919 16 C 0.076 3.924 17 N -0.793 5.793 18 Si 0.910 3.090 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.271 1.271 22 C -0.249 4.249 23 N -0.561 5.561 24 C 0.139 3.861 25 C -0.063 4.063 26 C -0.107 4.107 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.413 0.587 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.282 0.718 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.713 -0.164 1.216 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.080 4.080 3 C -0.151 4.151 4 C -0.082 4.082 5 C -0.345 4.345 6 S 0.363 5.637 7 C 0.003 3.997 8 N -0.250 5.250 9 C 0.063 3.937 10 C -0.272 4.272 11 C -0.105 4.105 12 C -0.180 4.180 13 C 0.131 3.869 14 C -0.488 4.488 15 H 0.099 0.901 16 C -0.142 4.142 17 N -0.418 5.418 18 Si 0.734 3.266 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.197 1.197 22 C -0.273 4.273 23 N -0.288 5.288 24 C 0.017 3.983 25 C -0.066 4.066 26 C -0.163 4.163 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.252 0.748 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.601 0.019 1.348 12.673 hybrid contribution -0.424 0.131 -0.341 0.559 sum -13.025 0.150 1.007 13.065 Atomic orbital electron populations 1.20830 0.91068 1.02753 1.02228 1.19379 0.95805 0.92059 1.00713 1.20762 0.93222 0.97355 1.03763 1.20204 0.93615 0.95270 0.99063 1.24031 0.98779 0.98413 1.13266 1.86147 0.99065 1.00482 1.78003 1.23825 0.89019 0.92463 0.94409 1.41412 1.02357 1.06518 1.74676 1.17500 0.79629 0.98438 0.98165 1.20078 0.92920 1.06405 1.07756 1.20535 0.94006 0.97361 0.98598 1.21393 1.00001 0.95628 1.01026 1.17379 0.89261 0.90440 0.89844 1.19609 1.08419 1.11775 1.08982 0.90119 1.25897 0.95649 0.97227 0.95419 1.69800 1.18120 1.34852 1.19070 0.86225 0.79389 0.79585 0.81389 1.18306 1.19844 1.19656 1.20917 0.96753 1.03386 1.06221 1.66226 1.00154 1.32495 1.29887 1.18513 0.93613 0.85614 1.00518 1.19121 0.89458 0.95440 1.02593 1.20715 0.99075 0.94480 1.02039 0.91252 0.91644 0.91144 0.85601 0.85826 0.74834 0.88686 0.88481 0.86193 0.90726 0.87526 0.91565 0.91578 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.57 36.01 0.34 -0.64 16 2 C -0.08 -0.96 5.86 -104.82 -0.61 -1.58 16 3 C -0.13 -1.62 9.69 -39.59 -0.38 -2.00 16 4 C -0.06 -0.86 10.06 -39.39 -0.40 -1.26 16 5 C -0.23 -3.96 6.52 -38.61 -0.25 -4.22 16 6 S 0.11 2.15 19.62 -107.50 -2.11 0.04 16 7 C 0.38 7.31 8.04 -88.80 -0.71 6.59 16 8 N -0.62 -11.58 5.46 -10.81 -0.06 -11.64 16 9 C 0.16 3.29 6.20 -83.80 -0.52 2.77 16 10 C -0.25 -5.15 9.97 -39.08 -0.39 -5.54 16 11 C -0.09 -1.85 10.01 -39.69 -0.40 -2.25 16 12 C -0.16 -3.88 8.65 -38.83 -0.34 -4.22 16 13 C 0.13 3.36 5.53 -106.85 -0.59 2.77 16 14 C -0.46 -11.55 9.05 -37.74 -0.34 -11.89 16 15 H 0.08 1.98 7.88 -52.49 -0.41 1.57 16 16 C 0.08 1.82 5.20 -17.34 -0.09 1.73 16 17 N -0.79 -19.49 11.04 55.55 0.61 -18.88 16 18 Si 0.91 17.95 29.58 -169.99 -5.03 12.93 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 C -0.25 -5.79 7.89 -38.68 -0.31 -6.10 16 23 N -0.56 -10.57 10.31 -11.13 -0.11 -10.68 16 24 C 0.14 2.47 6.71 -84.90 -0.57 1.90 16 25 C -0.06 -0.93 5.93 -103.91 -0.62 -1.54 16 26 C -0.11 -1.29 9.52 36.01 0.34 -0.95 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.07 0.56 5.87 -51.93 -0.30 0.26 16 30 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.41 6.67 8.95 -40.82 -0.37 6.30 16 33 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.12 2.99 6.38 -52.49 -0.33 2.65 16 36 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 37 H 0.11 2.47 5.94 -49.54 -0.29 2.17 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.64 5.87 -51.92 -0.30 0.33 16 40 H 0.07 0.95 7.91 -51.93 -0.41 0.54 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -27.16 345.41 -11.84 -39.00 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.52 Total: 10.44 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -5.83 Total: -26.42 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.44 Total: -41.20 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.11 Total: 0.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.16 -11.84 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559191866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.302 kcal (2) G-P(sol) polarization free energy of solvation -27.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds