Wall clock time and date at job start Tue Mar 31 2020 14:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46888 * 2 1 4 4 C 1.53000 * 109.46769 * 119.99380 * 2 1 3 5 5 N 1.46498 * 109.47451 * 305.00294 * 4 2 1 6 6 C 1.34776 * 120.00304 * 180.02562 * 5 4 2 7 7 O 1.21589 * 119.99623 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00054 * 179.97438 * 6 5 4 9 9 C 1.39945 * 119.99691 * 175.48910 * 8 6 5 10 10 C 1.38964 * 120.03713 * 214.85043 * 9 8 6 11 11 C 1.38157 * 120.06895 * 179.74737 * 10 9 8 12 12 C 1.38169 * 120.13522 * 0.55684 * 11 10 9 13 13 C 1.38904 * 120.07026 * 359.70114 * 12 11 10 14 14 O 1.35749 * 120.03225 * 179.97438 * 13 12 11 15 15 C 1.34831 * 117.00308 * 5.36379 * 14 13 12 16 16 H 1.08001 * 119.99633 * 354.96426 * 15 14 13 17 17 C 1.38654 * 120.00416 * 174.96322 * 15 14 13 18 18 N 1.31551 * 120.00039 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99867 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47106 * 89.99494 * 19 17 15 21 21 H 1.48497 * 109.46941 * 209.99899 * 19 17 15 22 22 H 1.48502 * 109.47252 * 329.99670 * 19 17 15 23 23 C 1.38704 * 120.03647 * 35.13397 * 9 8 6 24 24 C 1.50695 * 109.47405 * 239.99629 * 2 1 3 25 25 O 1.20827 * 119.99699 * 265.00530 * 24 2 1 26 26 O 1.34223 * 120.00130 * 85.00138 * 24 2 1 27 27 H 1.08999 * 109.46580 * 60.00204 * 1 2 3 28 28 H 1.09004 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47128 * 300.00600 * 1 2 3 30 30 H 0.96709 * 113.99593 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47175 * 65.00408 * 4 2 1 32 32 H 1.09002 * 109.47343 * 185.00226 * 4 2 1 33 33 H 0.97000 * 120.00187 * 359.97438 * 5 4 2 34 34 H 0.96992 * 120.00300 * 355.49415 * 8 6 5 35 35 H 1.07998 * 119.96024 * 0.02562 * 10 9 8 36 36 H 1.07998 * 119.92915 * 180.27761 * 11 10 9 37 37 H 1.08003 * 119.96428 * 179.71750 * 12 11 10 38 38 H 0.96999 * 120.00340 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.07022 * 359.95181 * 23 9 8 40 40 H 0.96709 * 117.00353 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.4557 -0.1035 2.4424 6 6 1.7646 -0.5765 3.6661 7 8 2.5277 -1.5162 3.7797 8 7 1.2275 -0.0079 4.7636 9 6 1.4728 -0.5571 6.0273 10 6 0.4845 -0.5244 7.0037 11 6 0.7241 -1.0710 8.2497 12 6 1.9503 -1.6414 8.5328 13 6 2.9441 -1.6724 7.5628 14 8 4.1487 -2.2326 7.8420 15 6 4.2791 -2.8391 9.0391 16 1 3.4745 -2.7933 9.7581 17 6 5.4461 -3.5216 9.3471 18 7 5.5734 -4.1129 10.5153 19 14 6.8379 -3.6002 8.1038 20 1 7.7515 -2.4477 8.3099 21 1 7.5911 -4.8673 8.2834 22 1 6.2776 -3.5480 6.7295 23 6 2.7045 -1.1294 6.3084 24 6 2.0324 -0.7104 -1.2304 25 8 2.3197 -1.8828 -1.1760 26 8 2.1607 -0.0410 -2.3866 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.9704 1.4236 -0.0004 31 1 1.7516 -1.7714 1.2058 32 1 3.1263 -0.6442 1.2954 33 1 0.8472 0.6464 2.3518 34 1 0.6710 0.7818 4.6778 35 1 -0.4734 -0.0752 6.7867 36 1 -0.0472 -1.0484 9.0054 37 1 2.1361 -2.0638 9.5093 38 1 6.3899 -4.5900 10.7310 39 1 3.4756 -1.1527 5.5525 40 1 2.4864 -0.5393 -3.1487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589144256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:25 Heat of formation + Delta-G solvation = -152.794239 kcal Electronic energy + Delta-G solvation = -26752.851123 eV Core-core repulsion = 22534.446117 eV Total energy + Delta-G solvation = -4218.405006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30648 -40.38548 -38.95131 -38.11162 -36.78826 -36.68051 -34.65457 -34.14777 -32.32276 -31.86144 -29.60326 -28.68102 -27.09514 -25.22229 -24.92515 -22.55115 -21.40747 -21.04371 -20.71643 -19.17254 -18.71907 -18.11660 -17.96480 -17.42644 -16.68562 -15.90944 -15.74368 -15.69281 -15.17215 -14.90983 -14.80933 -14.66258 -14.24604 -14.02573 -13.83955 -13.57317 -13.15636 -13.10132 -12.82391 -12.66557 -12.39692 -12.31438 -12.23752 -12.10483 -11.61454 -11.40701 -11.18807 -10.95697 -10.81459 -10.67775 -10.24545 -9.98033 -9.72363 -9.35773 -9.25680 -8.81262 -7.75394 -7.27323 -6.36005 -4.02371 1.49824 1.95416 2.11013 2.27329 2.74508 3.20940 3.30292 3.31570 3.37389 3.50783 3.82727 4.09570 4.14093 4.31535 4.51937 4.55041 4.94103 4.99334 5.05644 5.17070 5.18550 5.36243 5.45272 5.59337 5.75442 5.87841 6.07321 6.11808 6.16220 6.29763 6.42372 6.69868 6.74687 6.95655 7.10348 7.17509 7.29114 7.37371 7.63864 7.85859 7.92347 8.08857 8.55927 8.99792 9.63450 10.71477 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.015902 B = 0.002753 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.347330 B =10168.516644 C =11589.465437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.141 3.859 3 O -0.533 6.533 4 C 0.124 3.876 5 N -0.740 5.740 6 C 0.701 3.299 7 O -0.559 6.559 8 N -0.679 5.679 9 C 0.190 3.810 10 C -0.228 4.228 11 C -0.060 4.060 12 C -0.233 4.233 13 C 0.173 3.827 14 O -0.214 6.214 15 C -0.388 4.388 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.881 5.881 19 Si 0.902 3.098 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.257 1.257 23 C -0.186 4.186 24 C 0.458 3.542 25 O -0.496 6.496 26 O -0.503 6.503 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.389 0.611 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.399 0.601 34 H 0.403 0.597 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.279 0.721 39 H 0.135 0.865 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.599 12.593 -22.793 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.098 3.902 3 O -0.340 6.340 4 C -0.002 4.002 5 N -0.399 5.399 6 C 0.401 3.599 7 O -0.433 6.433 8 N -0.326 5.326 9 C 0.096 3.904 10 C -0.249 4.249 11 C -0.079 4.079 12 C -0.253 4.253 13 C 0.120 3.880 14 O -0.119 6.119 15 C -0.463 4.463 16 H 0.125 0.875 17 C -0.139 4.139 18 N -0.519 5.519 19 Si 0.728 3.272 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.181 1.181 23 C -0.208 4.208 24 C 0.297 3.703 25 O -0.383 6.383 26 O -0.315 6.315 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.238 0.762 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.234 0.766 34 H 0.237 0.763 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.151 0.849 38 H 0.089 0.911 39 H 0.153 0.847 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -11.219 11.574 -22.377 27.578 hybrid contribution 0.847 0.099 -0.950 1.277 sum -10.372 11.673 -23.327 28.071 Atomic orbital electron populations 1.21835 0.88976 1.04268 1.04878 1.21241 0.97674 0.82931 0.88396 1.86628 1.28059 1.22849 1.96439 1.21594 0.98915 0.98148 0.81520 1.44854 1.52629 1.38472 1.03967 1.15876 0.81309 0.82595 0.80133 1.91037 1.37809 1.29474 1.85011 1.42400 1.54182 1.31875 1.04181 1.16915 0.93049 0.97676 0.82727 1.20309 0.98093 1.11523 0.94982 1.20541 0.96100 0.95877 0.95356 1.21300 0.94450 1.08235 1.01305 1.18871 0.85300 0.91643 0.92164 1.83584 1.27565 1.63270 1.37453 1.20787 1.04702 1.31180 0.89660 0.87524 1.24446 0.97980 0.94751 0.96722 1.69643 1.28294 1.33179 1.20745 0.86215 0.81001 0.77574 0.82440 1.19906 1.20821 1.18078 1.20189 0.97128 1.07635 0.95820 1.24135 0.74682 0.86030 0.85440 1.90818 1.44946 1.17293 1.85241 1.84580 1.78904 1.47341 1.20656 0.90171 0.89663 0.89689 0.76222 0.88723 0.90307 0.76554 0.76257 0.87211 0.86738 0.84850 0.91101 0.84711 0.72873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 8.60 37.16 0.32 -0.44 16 2 C 0.14 0.95 1.02 -91.77 -0.09 0.86 16 3 O -0.53 -3.19 12.72 -49.12 -0.62 -3.82 16 4 C 0.12 1.17 4.45 -4.04 -0.02 1.15 16 5 N -0.74 -7.07 5.19 -65.23 -0.34 -7.41 16 6 C 0.70 10.22 8.41 -86.92 -0.73 9.49 16 7 O -0.56 -11.16 13.78 5.29 0.07 -11.09 16 8 N -0.68 -9.10 5.34 -14.24 -0.08 -9.17 16 9 C 0.19 3.38 6.30 -83.71 -0.53 2.85 16 10 C -0.23 -3.72 9.96 -39.34 -0.39 -4.11 16 11 C -0.06 -1.07 10.03 -39.64 -0.40 -1.47 16 12 C -0.23 -5.12 9.17 -39.36 -0.36 -5.48 16 13 C 0.17 4.22 6.64 -39.14 -0.26 3.96 16 14 O -0.21 -5.94 8.58 0.05 0.00 -5.94 16 15 C -0.39 -11.25 9.95 30.89 0.31 -10.95 16 16 H 0.11 3.12 5.43 -52.49 -0.29 2.83 16 17 C 0.06 1.85 5.49 -17.52 -0.10 1.76 16 18 N -0.88 -25.98 13.96 55.48 0.77 -25.20 16 19 Si 0.90 22.64 28.62 -169.99 -4.86 17.77 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.26 -6.64 7.11 56.52 0.40 -6.23 16 23 C -0.19 -4.10 8.64 -39.21 -0.34 -4.44 16 24 C 0.46 3.52 7.17 36.00 0.26 3.78 16 25 O -0.50 -5.52 16.75 -18.75 -0.31 -5.83 16 26 O -0.50 -2.71 13.18 -44.41 -0.59 -3.30 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.36 6.58 -51.93 -0.34 0.02 16 30 H 0.39 1.36 9.04 45.56 0.41 1.78 16 31 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.40 2.57 7.01 -40.82 -0.29 2.28 16 34 H 0.40 3.61 8.84 -40.82 -0.36 3.25 16 35 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.13 3.04 5.63 -52.48 -0.30 2.75 16 38 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.14 3.16 6.22 -52.49 -0.33 2.83 16 40 H 0.41 0.59 9.10 45.56 0.41 1.01 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -37.60 349.65 -5.73 -43.33 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -2.72 Total: 8.42 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.33 Total: -3.03 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.36 Total: -41.78 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.45 Total: -29.98 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.86 Total: 17.77 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.60 -5.73 -43.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589144256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.461 kcal (2) G-P(sol) polarization free energy of solvation -37.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds