Wall clock time and date at job start Tue Mar 31 2020 14:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46888 * 2 1 4 4 C 1.53000 * 109.46769 * 119.99380 * 2 1 3 5 5 N 1.46498 * 109.47451 * 305.00294 * 4 2 1 6 6 C 1.34776 * 120.00304 * 180.02562 * 5 4 2 7 7 O 1.21589 * 119.99623 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00054 * 179.97438 * 6 5 4 9 9 C 1.39945 * 119.99691 * 175.48910 * 8 6 5 10 10 C 1.38964 * 120.03713 * 214.85043 * 9 8 6 11 11 C 1.38157 * 120.06895 * 179.74737 * 10 9 8 12 12 C 1.38169 * 120.13522 * 0.55684 * 11 10 9 13 13 C 1.38904 * 120.07026 * 359.70114 * 12 11 10 14 14 O 1.35749 * 120.03225 * 179.97438 * 13 12 11 15 15 C 1.34831 * 117.00308 * 5.36379 * 14 13 12 16 16 H 1.08001 * 119.99633 * 354.96426 * 15 14 13 17 17 C 1.38654 * 120.00416 * 174.96322 * 15 14 13 18 18 N 1.31551 * 120.00039 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99867 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47106 * 89.99494 * 19 17 15 21 21 H 1.48497 * 109.46941 * 209.99899 * 19 17 15 22 22 H 1.48502 * 109.47252 * 329.99670 * 19 17 15 23 23 C 1.38704 * 120.03647 * 35.13397 * 9 8 6 24 24 C 1.50695 * 109.47405 * 239.99629 * 2 1 3 25 25 O 1.20827 * 119.99699 * 265.00530 * 24 2 1 26 26 O 1.34223 * 120.00130 * 85.00138 * 24 2 1 27 27 H 1.08999 * 109.46580 * 60.00204 * 1 2 3 28 28 H 1.09004 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47128 * 300.00600 * 1 2 3 30 30 H 0.96709 * 113.99593 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47175 * 65.00408 * 4 2 1 32 32 H 1.09002 * 109.47343 * 185.00226 * 4 2 1 33 33 H 0.97000 * 120.00187 * 359.97438 * 5 4 2 34 34 H 0.96992 * 120.00300 * 355.49415 * 8 6 5 35 35 H 1.07998 * 119.96024 * 0.02562 * 10 9 8 36 36 H 1.07998 * 119.92915 * 180.27761 * 11 10 9 37 37 H 1.08003 * 119.96428 * 179.71750 * 12 11 10 38 38 H 0.96999 * 120.00340 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.07022 * 359.95181 * 23 9 8 40 40 H 0.96709 * 117.00353 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.4557 -0.1035 2.4424 6 6 1.7646 -0.5765 3.6661 7 8 2.5277 -1.5162 3.7797 8 7 1.2275 -0.0079 4.7636 9 6 1.4728 -0.5571 6.0273 10 6 0.4845 -0.5244 7.0037 11 6 0.7241 -1.0710 8.2497 12 6 1.9503 -1.6414 8.5328 13 6 2.9441 -1.6724 7.5628 14 8 4.1487 -2.2326 7.8420 15 6 4.2791 -2.8391 9.0391 16 1 3.4745 -2.7933 9.7581 17 6 5.4461 -3.5216 9.3471 18 7 5.5734 -4.1129 10.5153 19 14 6.8379 -3.6002 8.1038 20 1 7.7515 -2.4477 8.3099 21 1 7.5911 -4.8673 8.2834 22 1 6.2776 -3.5480 6.7295 23 6 2.7045 -1.1294 6.3084 24 6 2.0324 -0.7104 -1.2304 25 8 2.3197 -1.8828 -1.1760 26 8 2.1607 -0.0410 -2.3866 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.9704 1.4236 -0.0004 31 1 1.7516 -1.7714 1.2058 32 1 3.1263 -0.6442 1.2954 33 1 0.8472 0.6464 2.3518 34 1 0.6710 0.7818 4.6778 35 1 -0.4734 -0.0752 6.7867 36 1 -0.0472 -1.0484 9.0054 37 1 2.1361 -2.0638 9.5093 38 1 6.3899 -4.5900 10.7310 39 1 3.4756 -1.1527 5.5525 40 1 2.4864 -0.5393 -3.1487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589144256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:25 Heat of formation + Delta-G solvation = -185.480153 kcal Electronic energy + Delta-G solvation = -26754.268490 eV Core-core repulsion = 22534.446117 eV Total energy + Delta-G solvation = -4219.822373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04561 -41.54961 -40.56050 -38.93990 -38.20973 -37.33132 -35.63603 -35.49594 -34.43419 -32.53667 -31.22625 -30.09882 -27.87176 -27.20434 -25.70329 -23.96075 -22.95297 -22.05467 -21.64246 -19.99322 -19.89253 -19.65182 -19.16988 -18.60398 -17.51882 -17.14770 -16.91532 -16.72961 -16.52909 -16.29578 -15.86170 -15.69486 -15.59923 -15.48921 -15.19218 -14.88684 -14.37793 -14.30069 -14.18802 -13.79462 -13.54296 -13.28539 -13.16838 -12.96592 -12.91902 -12.73720 -12.69292 -12.49429 -12.07213 -11.99381 -11.62599 -11.35594 -11.27761 -11.02723 -10.86715 -10.32703 -9.35194 -8.88840 -8.50995 -6.22470 0.44787 0.67600 0.89193 1.24169 1.27325 1.31512 1.49341 1.94667 2.00383 2.26846 2.76283 2.86983 3.00986 3.12354 3.18413 3.34107 3.58586 4.05715 4.14468 4.37353 4.38011 4.41959 4.49716 4.64824 4.65875 4.71992 4.74364 4.92268 5.05252 5.20932 5.36206 5.38074 5.42793 5.45649 5.70374 5.80891 5.90213 5.93879 6.24952 6.37067 6.82949 6.84309 6.94260 7.43640 7.61689 8.60566 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.015902 B = 0.002753 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.347330 B =10168.516644 C =11589.465437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.154 3.846 3 O -0.532 6.532 4 C 0.123 3.877 5 N -0.711 5.711 6 C 0.697 3.303 7 O -0.616 6.616 8 N -0.660 5.660 9 C 0.200 3.800 10 C -0.192 4.192 11 C -0.052 4.052 12 C -0.250 4.250 13 C 0.133 3.867 14 O -0.250 6.250 15 C -0.396 4.396 16 H 0.089 0.911 17 C 0.014 3.986 18 N -0.920 5.920 19 Si 0.962 3.038 20 H -0.262 1.262 21 H -0.263 1.263 22 H -0.276 1.276 23 C -0.204 4.204 24 C 0.465 3.535 25 O -0.538 6.538 26 O -0.496 6.496 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.400 0.600 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.419 0.581 34 H 0.430 0.570 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.113 0.887 38 H 0.285 0.715 39 H 0.112 0.888 40 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.479 15.308 -24.974 32.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.110 3.890 3 O -0.340 6.340 4 C -0.003 4.003 5 N -0.370 5.370 6 C 0.398 3.602 7 O -0.495 6.495 8 N -0.310 5.310 9 C 0.105 3.895 10 C -0.213 4.213 11 C -0.070 4.070 12 C -0.270 4.270 13 C 0.083 3.917 14 O -0.158 6.158 15 C -0.473 4.473 16 H 0.106 0.894 17 C -0.184 4.184 18 N -0.561 5.561 19 Si 0.785 3.215 20 H -0.187 1.187 21 H -0.188 1.188 22 H -0.201 1.201 23 C -0.225 4.225 24 C 0.306 3.694 25 O -0.427 6.427 26 O -0.309 6.309 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.251 0.749 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.259 0.741 34 H 0.270 0.730 35 H 0.186 0.814 36 H 0.174 0.826 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.130 0.870 40 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -14.169 14.400 -24.633 31.858 hybrid contribution 1.436 -0.524 -0.496 1.607 sum -12.733 13.876 -25.129 31.403 Atomic orbital electron populations 1.21917 0.87455 1.04606 1.06172 1.21027 0.98593 0.82756 0.86588 1.86622 1.29293 1.21837 1.96230 1.21571 0.98453 0.97623 0.82625 1.44531 1.51912 1.38226 1.02328 1.16103 0.80683 0.82067 0.81392 1.91028 1.40339 1.32195 1.85929 1.42135 1.54103 1.32456 1.02331 1.17033 0.91637 0.96098 0.84743 1.20906 0.99253 1.08041 0.93069 1.21017 0.94956 0.93925 0.97126 1.21357 0.96038 1.09481 1.00089 1.19387 0.85339 0.93046 0.93896 1.83531 1.29892 1.65503 1.36883 1.20779 1.04592 1.31687 0.90215 0.89375 1.25156 1.00108 0.94739 0.98439 1.69706 1.29395 1.34851 1.22150 0.85343 0.78502 0.78650 0.78989 1.18710 1.18788 1.20133 1.20235 0.98791 1.09045 0.94464 1.24254 0.73593 0.85366 0.86168 1.90817 1.46907 1.19091 1.85927 1.84536 1.78393 1.47223 1.20745 0.89108 0.89854 0.88185 0.74931 0.90823 0.91439 0.74127 0.73024 0.81447 0.82570 0.86906 0.90558 0.87013 0.70783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.60 71.98 0.62 -0.48 16 2 C 0.15 1.75 1.02 -11.54 -0.01 1.74 16 3 O -0.53 -4.78 12.72 -135.70 -1.73 -6.51 16 4 C 0.12 2.21 4.45 86.38 0.38 2.59 16 5 N -0.71 -11.87 5.19 -478.54 -2.49 -14.36 16 6 C 0.70 19.18 8.41 179.06 1.51 20.69 16 7 O -0.62 -24.99 13.78 -3.99 -0.06 -25.05 16 8 N -0.66 -15.39 5.34 -317.23 -1.70 -17.09 16 9 C 0.20 6.59 6.30 38.13 0.24 6.83 16 10 C -0.19 -5.28 9.96 22.42 0.22 -5.06 16 11 C -0.05 -1.68 10.03 22.23 0.22 -1.45 16 12 C -0.25 -11.13 9.17 22.41 0.21 -10.92 16 13 C 0.13 6.75 6.64 22.56 0.15 6.90 16 14 O -0.25 -14.80 8.58 -22.74 -0.20 -15.00 16 15 C -0.40 -24.47 9.95 67.92 0.68 -23.80 16 16 H 0.09 5.56 5.43 -2.91 -0.02 5.54 16 17 C 0.01 0.85 5.49 84.83 0.47 1.32 16 18 N -0.92 -56.56 13.96 21.61 0.30 -56.25 16 19 Si 0.96 48.77 28.62 68.60 1.96 50.73 16 20 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -14.70 7.11 99.48 0.71 -13.99 16 23 C -0.20 -9.12 8.64 22.51 0.19 -8.92 16 24 C 0.46 6.52 7.17 71.23 0.51 7.03 16 25 O -0.54 -11.88 16.75 21.96 0.37 -11.51 16 26 O -0.50 -4.24 13.18 -46.40 -0.61 -4.86 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.44 6.58 -2.39 -0.02 0.42 16 30 H 0.40 1.79 9.04 -74.05 -0.67 1.12 16 31 H 0.07 1.70 7.69 -2.39 -0.02 1.68 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.42 3.69 7.01 -92.71 -0.65 3.04 16 34 H 0.43 5.37 8.84 -92.71 -0.82 4.55 16 35 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 37 H 0.11 5.45 5.63 -2.91 -0.02 5.43 16 38 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16 39 H 0.11 5.51 6.22 -2.91 -0.02 5.49 16 40 H 0.43 0.37 9.10 -74.05 -0.67 -0.30 16 Total: -1.00 -89.11 349.65 -0.40 -89.51 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -1.65 Total: 13.91 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 5.39 Total: -3.53 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -3.88 Total: -87.70 kcal Atomic # 8 Polarization: -60.70 SS G_CDS: -2.22 Total: -62.92 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 1.96 Total: 50.73 kcal Total: -89.11 -0.40 -89.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589144256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.974 kcal (2) G-P(sol) polarization free energy of solvation -89.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds