Wall clock time and date at job start Tue Mar 31 2020 14:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47658 * 2 1 4 4 C 1.53004 * 109.47358 * 239.99736 * 2 1 3 5 5 N 1.46495 * 109.46674 * 59.99770 * 4 2 1 6 6 C 1.34789 * 119.99864 * 179.97438 * 5 4 2 7 7 O 1.21586 * 119.99417 * 0.02562 * 6 5 4 8 8 N 1.34769 * 119.99969 * 180.02562 * 6 5 4 9 9 C 1.39947 * 120.00104 * 175.50049 * 8 6 5 10 10 C 1.38954 * 120.03557 * 214.85373 * 9 8 6 11 11 C 1.38163 * 120.06598 * 179.74076 * 10 9 8 12 12 C 1.38169 * 120.13647 * 0.55281 * 11 10 9 13 13 C 1.38902 * 120.06755 * 359.69973 * 12 11 10 14 14 O 1.35750 * 120.02914 * 180.02562 * 13 12 11 15 15 C 1.34834 * 117.00391 * 5.36834 * 14 13 12 16 16 H 1.08005 * 119.99736 * 354.95810 * 15 14 13 17 17 C 1.38648 * 120.00043 * 174.96631 * 15 14 13 18 18 N 1.31554 * 120.00517 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99775 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46897 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47155 * 119.99756 * 19 17 15 22 22 H 1.48502 * 109.47375 * 239.99875 * 19 17 15 23 23 C 1.38711 * 120.03329 * 35.11973 * 9 8 6 24 24 C 1.50705 * 109.47331 * 119.99922 * 2 1 3 25 25 O 1.20821 * 120.00128 * 94.99435 * 24 2 1 26 26 O 1.34231 * 119.99698 * 275.00054 * 24 2 1 27 27 H 1.08998 * 109.47627 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46758 * 300.00601 * 1 2 3 29 29 H 1.09004 * 109.47026 * 59.99731 * 1 2 3 30 30 H 0.96692 * 114.00004 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46833 * 300.00586 * 4 2 1 32 32 H 1.08993 * 109.47200 * 180.02562 * 4 2 1 33 33 H 0.97001 * 120.00872 * 0.02562 * 5 4 2 34 34 H 0.97000 * 120.00160 * 355.49736 * 8 6 5 35 35 H 1.08001 * 119.96912 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.93057 * 180.27401 * 11 10 9 37 37 H 1.07995 * 119.95887 * 179.72123 * 12 11 10 38 38 H 0.96997 * 120.00695 * 180.02562 * 18 17 15 39 39 H 1.07997 * 120.06882 * 359.96318 * 23 9 8 40 40 H 0.96702 * 116.99238 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5516 -0.0307 -2.4453 6 6 1.8777 -0.4910 -3.6695 7 8 2.5768 -1.4795 -3.7810 8 7 1.4288 0.1446 -4.7699 9 6 1.8432 -0.2758 -6.0388 10 6 2.0349 0.6557 -7.0519 11 6 2.4492 0.2419 -8.3034 12 6 2.6631 -1.0997 -8.5548 13 6 2.4682 -2.0363 -7.5477 14 8 2.6791 -3.3542 -7.7954 15 6 3.1829 -3.6770 -9.0037 16 1 3.3233 -2.9113 -9.7523 17 6 3.5205 -4.9920 -9.2852 18 7 3.3497 -5.9247 -8.3733 19 14 4.2178 -5.4393 -10.9595 20 1 4.3100 -4.2182 -11.7996 21 1 5.5706 -6.0282 -10.7911 22 1 3.3265 -6.4271 -11.6192 23 6 2.0577 -1.6234 -6.2880 24 6 2.0324 -0.7104 1.2305 25 8 2.3196 -1.8827 1.1763 26 8 2.1605 -0.0407 2.3867 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.9703 1.4235 -0.0004 31 1 1.6766 -1.7489 -1.2492 32 1 3.1300 -0.7217 -1.2490 33 1 0.9942 0.7581 -2.3565 34 1 0.8185 0.8935 -4.6825 35 1 1.8635 1.7046 -6.8599 36 1 2.6017 0.9683 -9.0880 37 1 2.9825 -1.4204 -9.5353 38 1 3.5862 -6.8446 -8.5701 39 1 1.9058 -2.3496 -5.5032 40 1 2.4863 -0.5390 3.1488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589144257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:28 Heat of formation + Delta-G solvation = -155.002764 kcal Electronic energy + Delta-G solvation = -26673.651272 eV Core-core repulsion = 22455.150498 eV Total energy + Delta-G solvation = -4218.500774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23894 -40.28310 -38.79262 -38.02134 -36.71001 -36.53033 -34.53960 -34.04481 -32.19922 -31.83101 -29.41829 -28.50265 -26.98155 -25.28375 -24.87032 -22.40539 -21.43025 -21.00603 -20.66446 -19.11303 -18.59254 -18.19658 -17.93542 -17.10059 -16.58446 -15.93574 -15.63640 -15.59950 -15.00352 -14.84438 -14.71551 -14.52530 -14.21942 -14.06654 -13.77788 -13.48478 -13.09532 -13.06309 -12.81118 -12.55510 -12.43345 -12.31417 -12.04912 -11.70822 -11.47785 -11.34515 -11.16871 -10.99475 -10.75156 -10.61974 -10.39988 -9.97918 -9.67762 -9.27366 -9.15659 -8.77203 -7.62712 -7.13295 -6.36964 -3.96133 1.55949 2.04036 2.19285 2.39794 2.82705 3.16616 3.18234 3.24141 3.32918 3.43000 3.89454 4.01256 4.20460 4.22477 4.58518 4.64948 5.06482 5.12848 5.17441 5.25208 5.35777 5.46282 5.52432 5.66623 5.87550 5.93365 6.12967 6.20161 6.27036 6.43237 6.55192 6.79593 6.86112 7.07019 7.11577 7.25161 7.34735 7.39921 7.54599 7.86331 8.02283 8.08204 8.66330 9.07943 9.80089 10.81084 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.002484 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.711979 B =11270.465900 C =12458.922330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.141 3.859 3 O -0.533 6.533 4 C 0.124 3.876 5 N -0.741 5.741 6 C 0.700 3.300 7 O -0.556 6.556 8 N -0.679 5.679 9 C 0.191 3.809 10 C -0.236 4.236 11 C -0.059 4.059 12 C -0.246 4.246 13 C 0.167 3.833 14 O -0.174 6.174 15 C -0.391 4.391 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.186 4.186 24 C 0.457 3.543 25 O -0.495 6.495 26 O -0.504 6.504 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.388 0.612 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.399 0.601 34 H 0.402 0.598 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.269 0.731 39 H 0.136 0.864 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.578 16.533 17.219 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.098 3.902 3 O -0.340 6.340 4 C -0.001 4.001 5 N -0.400 5.400 6 C 0.400 3.600 7 O -0.430 6.430 8 N -0.327 5.327 9 C 0.098 3.902 10 C -0.258 4.258 11 C -0.078 4.078 12 C -0.266 4.266 13 C 0.112 3.888 14 O -0.077 6.077 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.207 4.207 24 C 0.297 3.703 25 O -0.382 6.382 26 O -0.315 6.315 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.237 0.763 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.234 0.766 34 H 0.236 0.764 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.153 0.847 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -5.608 15.160 16.977 23.441 hybrid contribution 0.700 0.096 -0.155 0.723 sum -4.908 15.256 16.822 23.234 Atomic orbital electron populations 1.21840 0.88945 1.04301 1.04881 1.21258 0.97669 0.82878 0.88389 1.86617 1.28018 1.22911 1.96435 1.21568 1.00118 0.96977 0.81445 1.44818 1.57823 1.33567 1.03754 1.15887 0.80723 0.83276 0.80134 1.91054 1.41155 1.25787 1.85026 1.42402 1.50074 1.36419 1.03758 1.16940 0.98706 0.92188 0.82414 1.20235 1.14005 0.97217 0.94320 1.20483 0.96854 0.95039 0.95401 1.21176 1.11733 0.93067 1.00651 1.19140 0.92178 0.85205 0.92263 1.83995 1.70593 1.17501 1.35631 1.21392 1.42167 0.94432 0.88718 0.88952 1.25302 0.97048 0.94646 0.99624 1.70063 1.44506 1.01511 1.33463 0.85647 0.78604 0.78951 0.80184 1.19104 1.20187 1.20211 1.20201 1.10196 0.94321 0.96026 1.24152 0.74712 0.86054 0.85423 1.90823 1.44864 1.17267 1.85227 1.84582 1.78950 1.47347 1.20664 0.89652 0.90253 0.89643 0.76273 0.88760 0.90380 0.76590 0.76372 0.87441 0.87070 0.85493 0.92113 0.84671 0.72928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.65 37.16 0.32 -0.54 16 2 C 0.14 1.04 1.01 -91.77 -0.09 0.94 16 3 O -0.53 -3.39 12.52 -49.12 -0.61 -4.01 16 4 C 0.12 1.27 4.31 -4.04 -0.02 1.25 16 5 N -0.74 -7.66 5.15 -65.23 -0.34 -7.99 16 6 C 0.70 10.90 8.41 -86.91 -0.73 10.16 16 7 O -0.56 -11.78 13.78 5.29 0.07 -11.71 16 8 N -0.68 -9.76 5.34 -14.24 -0.08 -9.84 16 9 C 0.19 3.60 6.30 -83.71 -0.53 3.07 16 10 C -0.24 -4.05 9.96 -39.34 -0.39 -4.44 16 11 C -0.06 -1.08 10.03 -39.63 -0.40 -1.48 16 12 C -0.25 -5.50 9.17 -39.36 -0.36 -5.86 16 13 C 0.17 4.27 6.64 -39.14 -0.26 4.01 16 14 O -0.17 -5.23 9.76 0.04 0.00 -5.23 16 15 C -0.39 -11.28 9.49 30.88 0.29 -10.99 16 16 H 0.09 2.45 5.20 -52.48 -0.27 2.18 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -26.18 13.67 55.48 0.76 -25.42 16 19 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 C -0.19 -4.36 8.64 -39.21 -0.34 -4.70 16 24 C 0.46 3.78 7.17 36.01 0.26 4.04 16 25 O -0.50 -5.83 16.85 -18.75 -0.32 -6.15 16 26 O -0.50 -2.95 13.18 -44.43 -0.59 -3.53 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.43 6.86 -51.93 -0.36 0.08 16 30 H 0.39 1.51 9.04 45.56 0.41 1.92 16 31 H 0.09 1.15 7.87 -51.93 -0.41 0.74 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.40 2.87 7.21 -40.82 -0.29 2.57 16 34 H 0.40 3.96 8.84 -40.82 -0.36 3.60 16 35 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.13 2.81 5.63 -52.49 -0.30 2.52 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.14 3.44 6.22 -52.49 -0.33 3.11 16 40 H 0.41 0.78 9.10 45.56 0.41 1.20 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -38.90 351.21 -5.90 -44.80 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -2.74 Total: 11.29 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.34 Total: -3.54 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.35 Total: -43.25 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -1.44 Total: -30.64 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -38.90 -5.90 -44.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589144257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.199 kcal (2) G-P(sol) polarization free energy of solvation -38.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds