Wall clock time and date at job start Tue Mar 31 2020 14:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47658 * 2 1 4 4 C 1.53004 * 109.47358 * 239.99736 * 2 1 3 5 5 N 1.46495 * 109.46674 * 59.99770 * 4 2 1 6 6 C 1.34789 * 119.99864 * 179.97438 * 5 4 2 7 7 O 1.21586 * 119.99417 * 0.02562 * 6 5 4 8 8 N 1.34769 * 119.99969 * 180.02562 * 6 5 4 9 9 C 1.39947 * 120.00104 * 175.50049 * 8 6 5 10 10 C 1.38954 * 120.03557 * 214.85373 * 9 8 6 11 11 C 1.38163 * 120.06598 * 179.74076 * 10 9 8 12 12 C 1.38169 * 120.13647 * 0.55281 * 11 10 9 13 13 C 1.38902 * 120.06755 * 359.69973 * 12 11 10 14 14 O 1.35750 * 120.02914 * 180.02562 * 13 12 11 15 15 C 1.34834 * 117.00391 * 5.36834 * 14 13 12 16 16 H 1.08005 * 119.99736 * 354.95810 * 15 14 13 17 17 C 1.38648 * 120.00043 * 174.96631 * 15 14 13 18 18 N 1.31554 * 120.00517 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99775 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46897 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47155 * 119.99756 * 19 17 15 22 22 H 1.48502 * 109.47375 * 239.99875 * 19 17 15 23 23 C 1.38711 * 120.03329 * 35.11973 * 9 8 6 24 24 C 1.50705 * 109.47331 * 119.99922 * 2 1 3 25 25 O 1.20821 * 120.00128 * 94.99435 * 24 2 1 26 26 O 1.34231 * 119.99698 * 275.00054 * 24 2 1 27 27 H 1.08998 * 109.47627 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46758 * 300.00601 * 1 2 3 29 29 H 1.09004 * 109.47026 * 59.99731 * 1 2 3 30 30 H 0.96692 * 114.00004 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46833 * 300.00586 * 4 2 1 32 32 H 1.08993 * 109.47200 * 180.02562 * 4 2 1 33 33 H 0.97001 * 120.00872 * 0.02562 * 5 4 2 34 34 H 0.97000 * 120.00160 * 355.49736 * 8 6 5 35 35 H 1.08001 * 119.96912 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.93057 * 180.27401 * 11 10 9 37 37 H 1.07995 * 119.95887 * 179.72123 * 12 11 10 38 38 H 0.96997 * 120.00695 * 180.02562 * 18 17 15 39 39 H 1.07997 * 120.06882 * 359.96318 * 23 9 8 40 40 H 0.96702 * 116.99238 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5516 -0.0307 -2.4453 6 6 1.8777 -0.4910 -3.6695 7 8 2.5768 -1.4795 -3.7810 8 7 1.4288 0.1446 -4.7699 9 6 1.8432 -0.2758 -6.0388 10 6 2.0349 0.6557 -7.0519 11 6 2.4492 0.2419 -8.3034 12 6 2.6631 -1.0997 -8.5548 13 6 2.4682 -2.0363 -7.5477 14 8 2.6791 -3.3542 -7.7954 15 6 3.1829 -3.6770 -9.0037 16 1 3.3233 -2.9113 -9.7523 17 6 3.5205 -4.9920 -9.2852 18 7 3.3497 -5.9247 -8.3733 19 14 4.2178 -5.4393 -10.9595 20 1 4.3100 -4.2182 -11.7996 21 1 5.5706 -6.0282 -10.7911 22 1 3.3265 -6.4271 -11.6192 23 6 2.0577 -1.6234 -6.2880 24 6 2.0324 -0.7104 1.2305 25 8 2.3196 -1.8827 1.1763 26 8 2.1605 -0.0407 2.3867 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.9703 1.4235 -0.0004 31 1 1.6766 -1.7489 -1.2492 32 1 3.1300 -0.7217 -1.2490 33 1 0.9942 0.7581 -2.3565 34 1 0.8185 0.8935 -4.6825 35 1 1.8635 1.7046 -6.8599 36 1 2.6017 0.9683 -9.0880 37 1 2.9825 -1.4204 -9.5353 38 1 3.5862 -6.8446 -8.5701 39 1 1.9058 -2.3496 -5.5032 40 1 2.4863 -0.5390 3.1488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589144257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:28 Heat of formation + Delta-G solvation = -189.528702 kcal Electronic energy + Delta-G solvation = -26675.148429 eV Core-core repulsion = 22455.150498 eV Total energy + Delta-G solvation = -4219.997931 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.03933 -41.52880 -40.44411 -38.90554 -38.13727 -37.33221 -35.62447 -35.46416 -34.24275 -32.57367 -31.08418 -30.00941 -27.85552 -27.28139 -25.69955 -23.87780 -23.06896 -22.05914 -21.66717 -20.02667 -19.84278 -19.66928 -18.90791 -18.60310 -17.45444 -17.22816 -16.78658 -16.68057 -16.52822 -16.14046 -16.01956 -15.67709 -15.49760 -15.39770 -15.30179 -14.87605 -14.43335 -14.21126 -13.85080 -13.57634 -13.55324 -13.22761 -13.15690 -12.93137 -12.91497 -12.69769 -12.69143 -12.34419 -12.07580 -12.00073 -11.61447 -11.31577 -11.28156 -10.95397 -10.76496 -10.33157 -9.28507 -8.83112 -8.44950 -6.14538 0.49078 0.74293 0.89002 1.23971 1.35107 1.44699 1.54966 1.95249 2.00631 2.19660 2.85369 2.87386 3.13986 3.17710 3.20598 3.57260 3.61420 4.06001 4.18529 4.36858 4.39966 4.45945 4.49364 4.64649 4.70712 4.73609 4.78458 5.03302 5.05696 5.13553 5.21259 5.40891 5.42490 5.49780 5.67251 5.77797 5.93262 6.05971 6.24822 6.37373 6.82708 6.95354 6.98819 7.44759 7.82863 8.79326 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.002484 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.711979 B =11270.465900 C =12458.922330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.156 3.844 3 O -0.529 6.529 4 C 0.123 3.877 5 N -0.710 5.710 6 C 0.696 3.304 7 O -0.617 6.617 8 N -0.661 5.661 9 C 0.201 3.799 10 C -0.202 4.202 11 C -0.048 4.048 12 C -0.256 4.256 13 C 0.125 3.875 14 O -0.237 6.237 15 C -0.412 4.412 16 H 0.107 0.893 17 C -0.030 4.030 18 N -0.926 5.926 19 Si 1.024 2.976 20 H -0.246 1.246 21 H -0.271 1.271 22 H -0.268 1.268 23 C -0.214 4.214 24 C 0.465 3.535 25 O -0.538 6.538 26 O -0.495 6.495 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.400 0.600 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.420 0.580 34 H 0.429 0.571 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.123 0.877 38 H 0.271 0.729 39 H 0.099 0.901 40 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 21.452 16.908 28.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.113 3.887 3 O -0.337 6.337 4 C -0.002 4.002 5 N -0.369 5.369 6 C 0.396 3.604 7 O -0.496 6.496 8 N -0.311 5.311 9 C 0.106 3.894 10 C -0.222 4.222 11 C -0.067 4.067 12 C -0.276 4.276 13 C 0.074 3.926 14 O -0.144 6.144 15 C -0.488 4.488 16 H 0.125 0.875 17 C -0.226 4.226 18 N -0.565 5.565 19 Si 0.843 3.157 20 H -0.169 1.169 21 H -0.196 1.196 22 H -0.193 1.193 23 C -0.236 4.236 24 C 0.306 3.694 25 O -0.428 6.428 26 O -0.308 6.308 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.251 0.749 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.259 0.741 34 H 0.269 0.731 35 H 0.184 0.816 36 H 0.178 0.822 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -6.331 20.238 16.748 27.022 hybrid contribution 0.818 -1.055 0.215 1.352 sum -5.513 19.183 16.963 26.194 Atomic orbital electron populations 1.21915 0.87579 1.04483 1.06214 1.20995 0.98458 0.82823 0.86471 1.86611 1.29316 1.21595 1.96205 1.21546 0.99585 0.96429 0.82678 1.44472 1.56816 1.33568 1.02048 1.16137 0.80237 0.82538 0.81480 1.91048 1.43941 1.28607 1.86002 1.42137 1.50172 1.36797 1.01947 1.17066 0.97110 0.90602 0.84646 1.20871 1.09391 0.99383 0.92577 1.21038 0.94594 0.93801 0.97244 1.21323 1.12101 0.94568 0.99597 1.19692 0.94007 0.84773 0.94133 1.83961 1.73532 1.20255 1.36664 1.21962 1.42369 0.95373 0.89070 0.87533 1.26729 0.97232 0.94144 1.04510 1.70236 1.47517 1.02096 1.36617 0.84459 0.77653 0.79278 0.74301 1.16880 1.19590 1.19284 1.20212 1.12376 0.96249 0.94722 1.24252 0.73589 0.85354 0.86181 1.90823 1.46894 1.19147 1.85940 1.84535 1.78408 1.47154 1.20691 0.90137 0.88955 0.88279 0.74888 0.91223 0.91481 0.74082 0.73077 0.81602 0.82152 0.85974 0.91964 0.88255 0.70793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.65 71.98 0.62 -0.80 16 2 C 0.16 2.05 1.01 -11.54 -0.01 2.04 16 3 O -0.53 -5.17 12.52 -135.70 -1.70 -6.87 16 4 C 0.12 2.51 4.31 86.38 0.37 2.89 16 5 N -0.71 -13.62 5.15 -478.54 -2.47 -16.09 16 6 C 0.70 21.34 8.41 179.05 1.51 22.84 16 7 O -0.62 -27.56 13.78 -3.99 -0.05 -27.62 16 8 N -0.66 -17.30 5.34 -317.23 -1.69 -19.00 16 9 C 0.20 7.20 6.30 38.13 0.24 7.44 16 10 C -0.20 -5.85 9.96 22.42 0.22 -5.63 16 11 C -0.05 -1.57 10.03 22.24 0.22 -1.35 16 12 C -0.26 -11.36 9.17 22.41 0.21 -11.15 16 13 C 0.12 6.74 6.64 22.56 0.15 6.89 16 14 O -0.24 -15.47 9.76 -22.78 -0.22 -15.70 16 15 C -0.41 -25.21 9.49 67.92 0.64 -24.56 16 16 H 0.11 5.88 5.20 -2.91 -0.02 5.86 16 17 C -0.03 -1.77 5.49 84.83 0.47 -1.30 16 18 N -0.93 -60.38 13.67 21.61 0.30 -60.08 16 19 Si 1.02 44.66 29.55 68.60 2.03 46.69 16 20 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 C -0.21 -10.51 8.64 22.51 0.19 -10.32 16 24 C 0.47 7.28 7.17 71.24 0.51 7.79 16 25 O -0.54 -12.99 16.85 21.98 0.37 -12.62 16 26 O -0.49 -4.80 13.18 -46.48 -0.61 -5.41 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.69 6.86 -2.38 -0.02 0.67 16 30 H 0.40 2.01 9.04 -74.06 -0.67 1.34 16 31 H 0.07 1.82 7.87 -2.39 -0.02 1.80 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 33 H 0.42 4.61 7.21 -92.71 -0.67 3.95 16 34 H 0.43 6.42 8.84 -92.71 -0.82 5.60 16 35 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.12 5.43 5.63 -2.91 -0.02 5.42 16 38 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 39 H 0.10 5.56 6.22 -2.91 -0.02 5.54 16 40 H 0.43 0.86 9.10 -74.06 -0.67 0.18 16 Total: -1.00 -96.08 351.21 -0.38 -96.47 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -1.67 Total: 25.45 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 5.35 Total: -5.22 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -3.87 Total: -95.17 kcal Atomic # 8 Polarization: -66.00 SS G_CDS: -2.22 Total: -68.22 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -96.08 -0.38 -96.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589144257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.064 kcal (2) G-P(sol) polarization free energy of solvation -96.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds