Wall clock time and date at job start Tue Mar 31 2020 14:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46896 * 109.47294 * 2 1 4 4 C 1.46904 * 110.99973 * 299.99992 * 3 2 1 5 5 C 1.52995 * 109.47265 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47408 * 59.99889 * 5 4 3 7 7 O 1.42901 * 109.47135 * 300.00246 * 5 4 3 8 8 C 1.50696 * 109.47388 * 180.02562 * 5 4 3 9 9 H 1.08001 * 119.99957 * 0.02562 * 8 5 4 10 10 C 1.37880 * 120.00404 * 179.97438 * 8 5 4 11 11 N 1.31513 * 119.99598 * 0.02562 * 10 8 5 12 12 Si 1.86804 * 120.00145 * 179.97438 * 10 8 5 13 13 H 1.48502 * 109.46766 * 60.00124 * 12 10 8 14 14 H 1.48502 * 109.46918 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47126 * 300.00258 * 12 10 8 16 16 C 1.50702 * 109.47183 * 240.00138 * 2 1 3 17 17 O 1.20831 * 119.99508 * 334.99757 * 16 2 1 18 18 O 1.34218 * 120.00226 * 155.00207 * 16 2 1 19 19 C 1.50701 * 109.47297 * 120.00014 * 2 1 3 20 20 C 1.38255 * 119.99840 * 239.99903 * 19 2 1 21 21 C 1.38220 * 119.99693 * 180.02562 * 20 19 2 22 22 C 1.38260 * 119.99862 * 0.26328 * 21 20 19 23 23 C 1.38209 * 120.00092 * 359.45892 * 22 21 20 24 24 N 1.48017 * 120.00211 * 180.28803 * 23 22 21 25 25 O 1.21793 * 120.00100 * 180.28009 * 24 23 22 26 26 O 1.21799 * 119.99759 * 0.26952 * 24 23 22 27 27 C 1.38216 * 120.00020 * 60.02185 * 19 2 1 28 28 H 1.09007 * 109.47153 * 299.99745 * 1 2 3 29 29 H 1.08997 * 109.47317 * 60.00110 * 1 2 3 30 30 H 1.09004 * 109.47617 * 180.02562 * 1 2 3 31 31 H 1.00899 * 111.00200 * 176.05220 * 3 2 1 32 32 H 1.09003 * 109.47408 * 300.00143 * 4 3 2 33 33 H 1.09002 * 109.46676 * 60.00121 * 4 3 2 34 34 H 0.96701 * 113.99861 * 299.99884 * 7 5 4 35 35 H 0.97001 * 119.99543 * 179.97438 * 11 10 8 36 36 H 0.96703 * 117.00054 * 179.97438 * 18 16 2 37 37 H 1.07999 * 120.00154 * 0.02562 * 20 19 2 38 38 H 1.08002 * 119.99600 * 179.97438 * 21 20 19 39 39 H 1.07995 * 119.99349 * 179.72815 * 22 21 20 40 40 H 1.08001 * 119.99686 * 359.97250 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5486 2.1099 -1.1877 5 6 2.0772 3.5452 -1.1521 6 1 3.1670 3.5310 -1.1436 7 8 1.6002 4.1993 0.0255 8 6 1.5935 4.2890 -2.3702 9 1 0.9710 3.7883 -3.0968 10 6 1.9448 5.6093 -2.5564 11 7 2.7025 6.2192 -1.6713 12 14 1.3458 6.5311 -4.0667 13 1 -0.1391 6.5498 -4.0785 14 1 1.8577 7.9246 -4.0314 15 1 1.8420 5.8517 -5.2905 16 6 2.0323 -0.7104 -1.2305 17 8 1.3395 -1.5362 -1.7764 18 8 3.2492 -0.4258 -1.7199 19 6 2.0323 -0.7104 1.2305 20 6 2.8272 -0.0385 2.1405 21 6 3.2884 -0.6902 3.2687 22 6 2.9593 -2.0157 3.4845 23 6 2.1600 -2.6857 2.5777 24 7 1.8024 -4.1028 2.8118 25 8 1.1022 -4.6946 2.0101 26 8 2.2085 -4.6770 3.8062 27 6 1.6988 -2.0338 1.4490 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.0262 1.4126 0.0649 32 1 1.9121 1.6107 -2.0860 33 1 0.4588 2.1245 -1.1959 34 1 0.6363 4.2487 0.0850 35 1 2.9499 7.1479 -1.8025 36 1 3.5280 -0.9075 -2.5108 37 1 3.0878 0.9956 1.9697 38 1 3.9097 -0.1654 3.9794 39 1 3.3233 -2.5261 4.3638 40 1 1.0778 -2.5586 0.7381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593286196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:54 Heat of formation + Delta-G solvation = -108.897774 kcal Electronic energy + Delta-G solvation = -27832.286876 eV Core-core repulsion = 23615.785364 eV Total energy + Delta-G solvation = -4216.501512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.37704 -41.17400 -39.52256 -37.16361 -36.73271 -36.33829 -35.31916 -32.28309 -32.21657 -32.07062 -29.61155 -27.98757 -26.67413 -25.66067 -24.07832 -23.26367 -22.52223 -20.96629 -20.29183 -19.09028 -18.82062 -18.13255 -17.70244 -17.29291 -17.11233 -16.67165 -16.19607 -15.59426 -15.34728 -14.69903 -14.54882 -14.31051 -14.07899 -13.83245 -13.58127 -13.28384 -12.76971 -12.65169 -12.50310 -12.28842 -11.96253 -11.76506 -11.65965 -11.62288 -11.53075 -11.33439 -11.30945 -11.07736 -10.98557 -10.90947 -10.62344 -10.18947 -9.86304 -9.58436 -9.18058 -8.68317 -8.46985 -8.18922 -6.11816 -4.30797 -0.36891 0.53495 1.14324 1.19211 1.99551 2.72085 3.04978 3.21736 3.27739 3.29067 3.73088 4.14608 4.18076 4.34690 4.45257 4.60934 4.64572 4.66570 4.84055 5.10487 5.16398 5.21186 5.37695 5.55330 5.59892 5.73957 5.81752 5.87915 5.93898 5.97482 6.01552 6.24710 6.26580 6.34360 6.62876 6.98473 7.33122 7.45755 7.59496 7.71222 7.72681 8.04982 8.71881 9.32005 9.48415 10.92256 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.003024 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.326412 B = 9256.814610 C = 9867.267700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.172 3.828 3 N -0.651 5.651 4 C 0.025 3.975 5 C 0.239 3.761 6 H 0.055 0.945 7 O -0.555 6.555 8 C -0.577 4.577 9 H 0.054 0.946 10 C 0.082 3.918 11 N -0.857 5.857 12 Si 0.890 3.110 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.454 3.546 17 O -0.510 6.510 18 O -0.509 6.509 19 C -0.076 4.076 20 C -0.033 4.033 21 C -0.116 4.116 22 C -0.053 4.053 23 C -0.047 4.047 24 N 0.030 4.970 25 O -0.161 6.161 26 O -0.163 6.163 27 C -0.048 4.048 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.351 0.649 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.345 0.655 35 H 0.262 0.738 36 H 0.410 0.590 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.309 -13.703 8.202 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.077 3.923 3 N -0.284 5.284 4 C -0.102 4.102 5 C 0.181 3.819 6 H 0.073 0.927 7 O -0.357 6.357 8 C -0.615 4.615 9 H 0.072 0.928 10 C -0.125 4.125 11 N -0.492 5.492 12 Si 0.717 3.283 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.202 1.202 16 C 0.293 3.707 17 O -0.397 6.397 18 O -0.321 6.321 19 C -0.077 4.077 20 C -0.051 4.051 21 C -0.135 4.135 22 C -0.073 4.073 23 C -0.130 4.130 24 N 0.550 4.450 25 O -0.377 6.377 26 O -0.378 6.378 27 C -0.068 4.068 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.171 0.829 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.188 0.812 35 H 0.072 0.928 36 H 0.269 0.731 37 H 0.181 0.819 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.418 -12.577 8.853 15.445 hybrid contribution -0.245 -0.688 -2.356 2.467 sum 1.173 -13.265 6.496 14.817 Atomic orbital electron populations 1.21894 0.89115 1.03318 1.04653 1.19854 0.97661 0.89101 0.85646 1.60837 1.17203 1.06815 1.43566 1.23175 1.00676 0.98547 0.87849 1.19257 0.94928 0.83183 0.84515 0.92734 1.86554 1.23641 1.81291 1.44200 1.21536 1.34807 0.97189 1.08013 0.92767 1.25000 0.94075 0.97572 0.95844 1.70055 1.33893 1.11471 1.33791 0.86723 0.79321 0.78927 0.83325 1.20082 1.21116 1.20193 1.24891 0.78980 0.80307 0.86503 1.90706 1.56772 1.32483 1.59689 1.84558 1.34633 1.65695 1.47209 1.19405 0.99184 0.92283 0.96836 1.21769 0.90530 1.01733 0.91086 1.21318 1.00738 0.92957 0.98480 1.21144 0.93323 0.94880 0.97907 1.20971 1.08610 0.82280 1.01170 1.43611 0.98601 1.03108 0.99724 1.94564 1.34421 1.67075 1.41613 1.94522 1.56287 1.68474 1.18548 1.20923 0.96629 0.94184 0.95022 0.89604 0.90528 0.91036 0.82864 0.95097 0.91053 0.81170 0.92819 0.73119 0.81856 0.82944 0.82887 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 7.58 37.16 0.28 -1.35 16 2 C 0.17 2.17 0.76 -133.91 -0.10 2.07 16 3 N -0.65 -9.27 4.85 -102.32 -0.50 -9.77 16 4 C 0.03 0.45 4.55 -3.82 -0.02 0.43 16 5 C 0.24 5.43 3.03 -27.89 -0.08 5.35 16 6 H 0.05 1.37 8.14 -51.93 -0.42 0.94 16 7 O -0.55 -12.88 12.59 -35.23 -0.44 -13.33 16 8 C -0.58 -14.79 8.76 -34.44 -0.30 -15.09 16 9 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 10 C 0.08 2.17 5.40 -17.82 -0.10 2.08 16 11 N -0.86 -24.02 12.84 55.43 0.71 -23.31 16 12 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 C 0.45 6.24 5.53 36.01 0.20 6.43 16 17 O -0.51 -8.04 16.85 -18.75 -0.32 -8.35 16 18 O -0.51 -6.14 12.23 -39.23 -0.48 -6.62 16 19 C -0.08 -0.84 4.76 -104.62 -0.50 -1.33 16 20 C -0.03 -0.31 9.14 -39.58 -0.36 -0.67 16 21 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 22 C -0.05 -0.47 9.56 -39.58 -0.38 -0.85 16 23 C -0.05 -0.54 6.85 -79.95 -0.55 -1.08 16 24 N 0.03 0.40 4.45 33.96 0.15 0.55 16 25 O -0.16 -2.32 18.45 -29.46 -0.54 -2.87 16 26 O -0.16 -2.17 18.45 -29.46 -0.54 -2.71 16 27 C -0.05 -0.55 8.33 -39.58 -0.33 -0.88 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.01 6.40 -51.93 -0.33 0.68 16 30 H 0.07 0.83 7.12 -51.93 -0.37 0.46 16 31 H 0.35 4.90 7.21 -39.29 -0.28 4.62 16 32 H 0.03 0.57 6.64 -51.93 -0.34 0.22 16 33 H 0.07 1.25 6.30 -51.93 -0.33 0.93 16 34 H 0.34 7.22 9.04 45.56 0.41 7.63 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.41 3.31 9.10 45.56 0.41 3.72 16 37 H 0.16 1.54 6.41 -52.49 -0.34 1.20 16 38 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.15 1.07 7.61 -52.49 -0.40 0.67 16 40 H 0.15 1.86 7.13 -52.49 -0.37 1.49 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -31.64 349.23 -7.10 -38.74 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -2.75 Total: 13.31 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.63 Total: -6.18 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.37 Total: -32.52 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -2.33 Total: -33.88 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.64 -7.10 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593286196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.155 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds