Wall clock time and date at job start Tue Mar 31 2020 14:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46896 * 109.47294 * 2 1 4 4 C 1.46904 * 110.99973 * 299.99992 * 3 2 1 5 5 C 1.52995 * 109.47265 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47408 * 59.99889 * 5 4 3 7 7 O 1.42901 * 109.47135 * 300.00246 * 5 4 3 8 8 C 1.50696 * 109.47388 * 180.02562 * 5 4 3 9 9 H 1.08001 * 119.99957 * 0.02562 * 8 5 4 10 10 C 1.37880 * 120.00404 * 179.97438 * 8 5 4 11 11 N 1.31513 * 119.99598 * 0.02562 * 10 8 5 12 12 Si 1.86804 * 120.00145 * 179.97438 * 10 8 5 13 13 H 1.48502 * 109.46766 * 60.00124 * 12 10 8 14 14 H 1.48502 * 109.46918 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47126 * 300.00258 * 12 10 8 16 16 C 1.50702 * 109.47183 * 240.00138 * 2 1 3 17 17 O 1.20831 * 119.99508 * 334.99757 * 16 2 1 18 18 O 1.34218 * 120.00226 * 155.00207 * 16 2 1 19 19 C 1.50701 * 109.47297 * 120.00014 * 2 1 3 20 20 C 1.38255 * 119.99840 * 239.99903 * 19 2 1 21 21 C 1.38220 * 119.99693 * 180.02562 * 20 19 2 22 22 C 1.38260 * 119.99862 * 0.26328 * 21 20 19 23 23 C 1.38209 * 120.00092 * 359.45892 * 22 21 20 24 24 N 1.48017 * 120.00211 * 180.28803 * 23 22 21 25 25 O 1.21793 * 120.00100 * 180.28009 * 24 23 22 26 26 O 1.21799 * 119.99759 * 0.26952 * 24 23 22 27 27 C 1.38216 * 120.00020 * 60.02185 * 19 2 1 28 28 H 1.09007 * 109.47153 * 299.99745 * 1 2 3 29 29 H 1.08997 * 109.47317 * 60.00110 * 1 2 3 30 30 H 1.09004 * 109.47617 * 180.02562 * 1 2 3 31 31 H 1.00899 * 111.00200 * 176.05220 * 3 2 1 32 32 H 1.09003 * 109.47408 * 300.00143 * 4 3 2 33 33 H 1.09002 * 109.46676 * 60.00121 * 4 3 2 34 34 H 0.96701 * 113.99861 * 299.99884 * 7 5 4 35 35 H 0.97001 * 119.99543 * 179.97438 * 11 10 8 36 36 H 0.96703 * 117.00054 * 179.97438 * 18 16 2 37 37 H 1.07999 * 120.00154 * 0.02562 * 20 19 2 38 38 H 1.08002 * 119.99600 * 179.97438 * 21 20 19 39 39 H 1.07995 * 119.99349 * 179.72815 * 22 21 20 40 40 H 1.08001 * 119.99686 * 359.97250 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5486 2.1099 -1.1877 5 6 2.0772 3.5452 -1.1521 6 1 3.1670 3.5310 -1.1436 7 8 1.6002 4.1993 0.0255 8 6 1.5935 4.2890 -2.3702 9 1 0.9710 3.7883 -3.0968 10 6 1.9448 5.6093 -2.5564 11 7 2.7025 6.2192 -1.6713 12 14 1.3458 6.5311 -4.0667 13 1 -0.1391 6.5498 -4.0785 14 1 1.8577 7.9246 -4.0314 15 1 1.8420 5.8517 -5.2905 16 6 2.0323 -0.7104 -1.2305 17 8 1.3395 -1.5362 -1.7764 18 8 3.2492 -0.4258 -1.7199 19 6 2.0323 -0.7104 1.2305 20 6 2.8272 -0.0385 2.1405 21 6 3.2884 -0.6902 3.2687 22 6 2.9593 -2.0157 3.4845 23 6 2.1600 -2.6857 2.5777 24 7 1.8024 -4.1028 2.8118 25 8 1.1022 -4.6946 2.0101 26 8 2.2085 -4.6770 3.8062 27 6 1.6988 -2.0338 1.4490 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.0262 1.4126 0.0649 32 1 1.9121 1.6107 -2.0860 33 1 0.4588 2.1245 -1.1959 34 1 0.6363 4.2487 0.0850 35 1 2.9499 7.1479 -1.8025 36 1 3.5280 -0.9075 -2.5108 37 1 3.0878 0.9956 1.9697 38 1 3.9097 -0.1654 3.9794 39 1 3.3233 -2.5261 4.3638 40 1 1.0778 -2.5586 0.7381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593286196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:53 Heat of formation + Delta-G solvation = -131.874714 kcal Electronic energy + Delta-G solvation = -27833.283231 eV Core-core repulsion = 23615.785364 eV Total energy + Delta-G solvation = -4217.497867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.34549 -42.21217 -40.41900 -38.51757 -37.75090 -37.40765 -36.82440 -34.20568 -33.27623 -33.02617 -30.70114 -29.48518 -27.69895 -26.96891 -25.47043 -24.25676 -23.40791 -22.48642 -21.38420 -20.04728 -19.81839 -19.30161 -18.87417 -18.68190 -18.29408 -17.72692 -17.19214 -16.69117 -16.62662 -16.36950 -15.83406 -15.52970 -15.32671 -15.07993 -14.74628 -14.33119 -14.17979 -13.67472 -13.60145 -13.24437 -13.23437 -13.01534 -12.85881 -12.78615 -12.75010 -12.69591 -12.65567 -12.47999 -12.36669 -12.29632 -12.03081 -11.82683 -11.01621 -10.68868 -10.64454 -10.37857 -10.10425 -9.64177 -8.12837 -6.37324 -1.29523 -0.23267 0.24208 0.28797 0.91659 1.42027 1.42721 1.50301 1.78345 2.24608 2.38019 2.72858 3.13993 3.18943 3.39765 3.62844 3.68949 3.78881 3.93295 3.97240 4.19146 4.32213 4.36103 4.45378 4.54215 4.62199 4.63501 4.68070 4.97313 5.00436 5.02019 5.08921 5.14717 5.35986 5.44052 5.61954 5.68451 5.78704 6.08214 6.20424 6.41490 6.73524 6.74207 7.37042 7.64893 8.90853 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.003024 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.326412 B = 9256.814610 C = 9867.267700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.175 3.825 3 N -0.642 5.642 4 C 0.047 3.953 5 C 0.242 3.758 6 H 0.027 0.973 7 O -0.566 6.566 8 C -0.589 4.589 9 H 0.055 0.945 10 C 0.033 3.967 11 N -0.893 5.893 12 Si 0.951 3.049 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.454 3.546 17 O -0.535 6.535 18 O -0.510 6.510 19 C -0.082 4.082 20 C -0.031 4.031 21 C -0.097 4.097 22 C -0.043 4.043 23 C -0.060 4.060 24 N 0.032 4.968 25 O -0.207 6.207 26 O -0.151 6.151 27 C -0.054 4.054 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.354 0.646 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.355 0.645 35 H 0.261 0.739 36 H 0.426 0.574 37 H 0.167 0.833 38 H 0.192 0.808 39 H 0.177 0.823 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 -13.508 9.260 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.081 3.919 3 N -0.275 5.275 4 C -0.082 4.082 5 C 0.184 3.816 6 H 0.045 0.955 7 O -0.369 6.369 8 C -0.628 4.628 9 H 0.073 0.927 10 C -0.171 4.171 11 N -0.530 5.530 12 Si 0.776 3.224 13 H -0.194 1.194 14 H -0.211 1.211 15 H -0.197 1.197 16 C 0.294 3.706 17 O -0.424 6.424 18 O -0.323 6.323 19 C -0.084 4.084 20 C -0.049 4.049 21 C -0.115 4.115 22 C -0.061 4.061 23 C -0.144 4.144 24 N 0.547 4.453 25 O -0.413 6.413 26 O -0.372 6.372 27 C -0.074 4.074 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.175 0.825 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.199 0.801 35 H 0.070 0.930 36 H 0.288 0.712 37 H 0.184 0.816 38 H 0.209 0.791 39 H 0.194 0.806 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.914 -12.417 9.832 15.954 hybrid contribution -0.312 -0.745 -2.594 2.717 sum 1.602 -13.162 7.238 15.106 Atomic orbital electron populations 1.21902 0.88990 1.03555 1.04538 1.19831 0.97823 0.87958 0.86255 1.60715 1.17443 1.07766 1.41536 1.22699 1.00559 0.95962 0.88985 1.19058 0.93428 0.85689 0.83467 0.95541 1.86497 1.24568 1.81772 1.44062 1.21971 1.34246 0.97606 1.08954 0.92721 1.25756 0.94263 0.98625 0.98426 1.70172 1.35436 1.11688 1.35700 0.85748 0.78984 0.77560 0.80077 1.19426 1.21067 1.19720 1.25075 0.79090 0.79896 0.86503 1.90699 1.57540 1.33685 1.60436 1.84522 1.33846 1.65820 1.48128 1.19215 1.00390 0.92092 0.96661 1.21911 0.89845 1.01838 0.91274 1.21706 0.99648 0.92216 0.97962 1.21519 0.91743 0.95186 0.97693 1.21119 1.09998 0.81128 1.02113 1.43894 0.98173 1.03892 0.99358 1.94572 1.36281 1.68045 1.42361 1.94484 1.55447 1.69022 1.18283 1.20771 0.97057 0.94342 0.95203 0.88585 0.91665 0.90708 0.82482 0.95773 0.90704 0.80090 0.92969 0.71202 0.81557 0.79082 0.80559 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 7.58 71.98 0.55 -2.64 16 2 C 0.18 4.29 0.76 2.04 0.00 4.29 16 3 N -0.64 -17.60 4.85 -477.64 -2.32 -19.92 16 4 C 0.05 1.63 4.55 86.30 0.39 2.02 16 5 C 0.24 10.97 3.03 29.85 0.09 11.06 16 6 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 7 O -0.57 -26.07 12.59 -148.98 -1.88 -27.95 16 8 C -0.59 -30.12 8.76 25.60 0.22 -29.89 16 9 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 10 C 0.03 1.72 5.40 84.66 0.46 2.17 16 11 N -0.89 -50.31 12.84 21.45 0.28 -50.03 16 12 Si 0.95 41.37 29.54 68.60 2.03 43.40 16 13 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 14 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 16 C 0.45 12.28 5.53 71.24 0.39 12.68 16 17 O -0.54 -16.95 16.85 21.95 0.37 -16.58 16 18 O -0.51 -11.87 12.23 -51.30 -0.63 -12.50 16 19 C -0.08 -1.70 4.76 -19.87 -0.09 -1.79 16 20 C -0.03 -0.49 9.14 22.27 0.20 -0.29 16 21 C -0.10 -1.08 10.05 22.27 0.22 -0.86 16 22 C -0.04 -0.60 9.56 22.27 0.21 -0.39 16 23 C -0.06 -1.28 6.85 36.37 0.25 -1.03 16 24 N 0.03 0.82 4.45 -46.47 -0.21 0.61 16 25 O -0.21 -6.17 18.45 18.90 0.35 -5.82 16 26 O -0.15 -3.82 18.45 18.89 0.35 -3.47 16 27 C -0.05 -1.21 8.33 22.27 0.19 -1.02 16 28 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.06 1.70 6.40 -2.39 -0.02 1.69 16 30 H 0.07 1.74 7.12 -2.38 -0.02 1.72 16 31 H 0.35 9.46 7.21 -89.69 -0.65 8.82 16 32 H 0.02 0.88 6.64 -2.39 -0.02 0.86 16 33 H 0.07 2.58 6.30 -2.39 -0.02 2.56 16 34 H 0.35 14.63 9.04 -74.06 -0.67 13.96 16 35 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.43 6.53 9.10 -74.06 -0.67 5.86 16 37 H 0.17 2.66 6.41 -2.91 -0.02 2.64 16 38 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 39 H 0.18 1.71 7.61 -2.91 -0.02 1.69 16 40 H 0.14 3.50 7.13 -2.91 -0.02 3.48 16 Total: -1.00 -68.21 349.23 0.58 -67.63 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -0.85 Total: 30.30 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 3.09 Total: -5.68 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -2.25 Total: -69.34 kcal Atomic # 8 Polarization: -64.87 SS G_CDS: -1.44 Total: -66.31 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -68.21 0.58 -67.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593286196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.240 kcal (2) G-P(sol) polarization free energy of solvation -68.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds