Wall clock time and date at job start Tue Mar 31 2020 13:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 110.64084 * 2 1 4 4 O 1.20826 * 120.00364 * 118.31730 * 3 2 1 5 5 O 1.34235 * 119.99912 * 298.30838 * 3 2 1 6 6 C 1.55164 * 110.86827 * 123.24361 * 2 1 3 7 7 C 1.55130 * 101.48269 * 82.76867 * 6 2 1 8 8 N 1.47421 * 104.72136 * 37.29279 * 7 6 2 9 9 C 1.34783 * 125.64569 * 155.82119 * 8 7 6 10 10 O 1.21587 * 120.00090 * 179.68681 * 9 8 7 11 11 N 1.34781 * 120.00017 * 359.68455 * 9 8 7 12 12 C 1.46499 * 119.99874 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47391 * 325.00213 * 12 11 9 14 14 C 1.50699 * 109.47060 * 205.00285 * 12 11 9 15 15 H 1.07999 * 120.00019 * 0.02562 * 14 12 11 16 16 C 1.37877 * 120.00129 * 180.02562 * 14 12 11 17 17 N 1.31519 * 119.99723 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99900 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47147 * 90.00197 * 18 16 14 20 20 H 1.48499 * 109.46797 * 209.99607 * 18 16 14 21 21 H 1.48500 * 109.47032 * 329.99738 * 18 16 14 22 22 C 1.53000 * 109.46840 * 85.00543 * 12 11 9 23 23 F 1.39898 * 109.46890 * 179.97438 * 22 12 11 24 24 F 1.39904 * 109.47059 * 299.99397 * 22 12 11 25 25 F 1.39895 * 109.47411 * 59.99655 * 22 12 11 26 26 C 1.47016 * 108.70917 * 335.54978 * 8 7 6 27 27 H 1.08998 * 109.47635 * 181.69304 * 1 2 3 28 28 H 1.09003 * 109.47098 * 301.69563 * 1 2 3 29 29 H 1.08995 * 109.47037 * 61.68982 * 1 2 3 30 30 H 0.96700 * 116.99630 * 180.02562 * 5 3 2 31 31 H 1.09005 * 110.99974 * 201.00320 * 6 2 1 32 32 H 1.08992 * 111.00794 * 324.81490 * 6 2 1 33 33 H 1.08993 * 110.49701 * 278.44767 * 7 6 2 34 34 H 1.09002 * 110.34093 * 156.05371 * 7 6 2 35 35 H 0.97002 * 119.99716 * 0.02562 * 11 9 8 36 36 H 0.97003 * 119.99231 * 179.97438 * 17 16 14 37 37 H 1.09007 * 109.88244 * 120.70493 * 26 8 7 38 38 H 1.09001 * 109.88697 * 241.72092 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0612 1.4102 0.0000 4 8 2.7387 1.8007 0.9211 5 8 1.7819 2.2326 -1.0235 6 6 2.0827 -0.7948 1.2126 7 6 2.0139 -2.2517 0.6842 8 7 2.3756 -2.1506 -0.7414 9 6 2.8901 -3.1437 -1.4936 10 8 3.1465 -2.9481 -2.6659 11 7 3.1205 -4.3536 -0.9462 12 6 3.6803 -5.4328 -1.7636 13 1 3.2942 -5.3564 -2.7801 14 6 3.2876 -6.7636 -1.1757 15 1 2.6813 -6.8018 -0.2828 16 6 3.7023 -7.9326 -1.7778 17 7 4.4403 -7.8861 -2.8655 18 14 3.2161 -9.5823 -1.0487 19 1 1.9288 -10.0255 -1.6417 20 1 4.2698 -10.5852 -1.3471 21 1 3.0632 -9.4476 0.4223 22 6 5.2057 -5.3158 -1.7873 23 9 5.7403 -6.3467 -2.5674 24 9 5.5702 -4.0803 -2.3331 25 9 5.7012 -5.4138 -0.4827 26 6 2.0760 -0.7892 -1.2086 27 1 -0.3634 -1.0272 0.0304 28 1 -0.3633 0.5400 0.8744 29 1 -0.3633 0.4873 -0.9047 30 1 2.1451 3.1277 -0.9791 31 1 3.1096 -0.5043 1.4348 32 1 1.4449 -0.6670 2.0871 33 1 1.0050 -2.6497 0.7923 34 1 2.7296 -2.8809 1.2134 35 1 2.9157 -4.5097 -0.0110 36 1 4.7323 -8.7086 -3.2888 37 1 2.9851 -0.3163 -1.5800 38 1 1.3270 -0.8251 -1.9997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593791197.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:42 Heat of formation + Delta-G solvation = -250.479084 kcal Electronic energy + Delta-G solvation = -29184.946185 eV Core-core repulsion = 24420.448506 eV Total energy + Delta-G solvation = -4764.497679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.31308 -45.96525 -45.58323 -41.09120 -39.60479 -37.63926 -36.36392 -34.64555 -33.16668 -32.33036 -29.71357 -28.53984 -26.74236 -24.65609 -24.34411 -23.16510 -21.39780 -19.99775 -19.57633 -18.31971 -18.12787 -17.01914 -16.80796 -16.70962 -16.47214 -16.23872 -15.69266 -15.31965 -15.14254 -14.74286 -14.28260 -13.84862 -13.70497 -13.25919 -12.96098 -12.89857 -12.85892 -12.59199 -12.48106 -12.36332 -12.25473 -12.18950 -11.96769 -11.89243 -11.79297 -11.73654 -11.34834 -11.17496 -11.09167 -10.84465 -10.79931 -10.69200 -10.39779 -9.67203 -9.58369 -8.72828 -8.56155 -8.13490 -6.23559 -4.47505 1.87798 2.59782 3.00986 3.18363 3.25090 3.28112 3.70439 3.92528 4.16855 4.23791 4.46601 4.53120 4.65770 4.87253 4.93749 4.94217 5.09952 5.30241 5.44063 5.49818 5.55538 5.64313 5.72031 5.79597 5.86148 5.90437 5.94513 6.18279 6.20840 6.35020 6.86315 7.19650 7.36627 7.58612 7.61167 7.64902 8.48032 8.57089 9.11181 9.22869 10.68085 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022666 B = 0.003572 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.009076 B = 7837.473242 C = 8330.500820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C 0.498 3.502 4 O -0.510 6.510 5 O -0.510 6.510 6 C -0.111 4.111 7 C 0.099 3.901 8 N -0.642 5.642 9 C 0.719 3.281 10 O -0.578 6.578 11 N -0.722 5.722 12 C 0.262 3.738 13 H 0.086 0.914 14 C -0.552 4.552 15 H 0.077 0.923 16 C 0.065 3.935 17 N -0.839 5.839 18 Si 0.916 3.084 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.271 1.271 22 C 0.415 3.585 23 F -0.137 7.137 24 F -0.217 7.217 25 F -0.210 7.210 26 C 0.148 3.852 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.411 0.589 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.394 0.606 36 H 0.268 0.732 37 H 0.068 0.932 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.819 13.881 7.225 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 C 0.339 3.661 4 O -0.397 6.397 5 O -0.322 6.322 6 C -0.149 4.149 7 C -0.024 4.024 8 N -0.383 5.383 9 C 0.421 3.579 10 O -0.454 6.454 11 N -0.375 5.375 12 C 0.156 3.844 13 H 0.103 0.897 14 C -0.589 4.589 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.472 5.472 18 Si 0.742 3.258 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.195 1.195 22 C 0.359 3.641 23 F -0.118 7.118 24 F -0.199 7.199 25 F -0.192 7.192 26 C 0.024 3.976 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.269 0.731 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.228 0.772 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.407 13.508 6.336 16.658 hybrid contribution 0.375 -0.216 0.877 0.978 sum -7.032 13.292 7.213 16.678 Atomic orbital electron populations 1.21832 0.90191 1.04017 1.03230 1.21567 0.98470 0.87949 0.99079 1.23014 0.76523 0.87712 0.78842 1.90728 1.36191 1.76579 1.36213 1.84555 1.72490 1.28343 1.46785 1.22884 1.03369 0.93008 0.95615 1.22354 1.01130 0.96887 0.82021 1.47476 1.69012 1.11074 1.10726 1.15536 0.78103 0.79961 0.84340 1.90934 1.58286 1.81617 1.14598 1.45278 1.67727 1.09929 1.14564 1.19634 0.83517 0.85681 0.95579 0.89657 1.20857 1.36433 0.87894 1.13679 0.90503 1.25079 0.93994 1.00180 0.95132 1.70412 1.30666 1.28415 1.17716 0.86204 0.78303 0.81826 0.79434 1.20201 1.20805 1.19539 1.23178 0.95528 0.72708 0.72680 1.93402 1.88178 1.56170 1.74081 1.93075 1.93937 1.46495 1.86349 1.92981 1.90252 1.96040 1.39939 1.21538 1.00735 0.81396 0.93942 0.90271 0.91657 0.90752 0.73052 0.89028 0.88885 0.90913 0.90031 0.77162 0.92105 0.91357 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.41 37.16 0.31 -0.69 16 2 C -0.07 -0.67 0.86 -153.82 -0.13 -0.81 16 3 C 0.50 5.15 6.83 36.00 0.25 5.40 16 4 O -0.51 -6.61 16.52 -18.75 -0.31 -6.92 16 5 O -0.51 -4.05 13.38 -39.27 -0.53 -4.58 16 6 C -0.11 -1.06 5.65 -24.46 -0.14 -1.20 16 7 C 0.10 1.09 6.27 -2.41 -0.02 1.08 16 8 N -0.64 -9.79 3.32 -176.10 -0.59 -10.38 16 9 C 0.72 14.69 8.02 -86.91 -0.70 14.00 16 10 O -0.58 -14.15 15.24 5.29 0.08 -14.07 16 11 N -0.72 -14.96 4.94 -59.81 -0.30 -15.25 16 12 C 0.26 6.54 2.21 -69.08 -0.15 6.39 16 13 H 0.09 2.39 7.58 -51.93 -0.39 2.00 16 14 C -0.55 -13.95 8.46 -34.44 -0.29 -14.24 16 15 H 0.08 1.82 7.74 -52.49 -0.41 1.42 16 16 C 0.07 1.68 5.20 -17.82 -0.09 1.59 16 17 N -0.84 -22.93 9.50 55.43 0.53 -22.40 16 18 Si 0.92 19.89 29.54 -169.99 -5.02 14.87 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 C 0.42 10.79 2.81 37.16 0.10 10.90 16 23 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 24 F -0.22 -5.66 15.68 2.25 0.04 -5.62 16 25 F -0.21 -5.24 16.94 2.25 0.04 -5.20 16 26 C 0.15 1.92 6.02 -3.07 -0.02 1.91 16 27 H 0.08 0.57 7.44 -51.93 -0.39 0.18 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.41 1.52 9.10 45.56 0.41 1.94 16 31 H 0.09 1.02 7.49 -51.93 -0.39 0.63 16 32 H 0.09 0.68 8.04 -51.93 -0.42 0.26 16 33 H 0.07 0.67 7.71 -51.93 -0.40 0.27 16 34 H 0.08 0.89 7.29 -51.93 -0.38 0.51 16 35 H 0.39 7.04 7.01 -40.82 -0.29 6.75 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.07 0.98 7.81 -51.93 -0.41 0.57 16 38 H 0.08 1.03 7.85 -51.93 -0.41 0.62 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -33.48 329.70 -5.37 -38.85 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.44 Total: 5.22 kcal Atomic # 6 Polarization: 25.20 SS G_CDS: -0.88 Total: 24.32 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.35 Total: -48.03 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.75 Total: -25.57 kcal Atomic # 9 Polarization: -14.72 SS G_CDS: 0.10 Total: -14.62 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.48 -5.37 -38.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593791197.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.631 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds