Wall clock time and date at job start Tue Mar 31 2020 13:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 110.64084 * 2 1 4 4 O 1.20826 * 120.00364 * 118.31730 * 3 2 1 5 5 O 1.34235 * 119.99912 * 298.30838 * 3 2 1 6 6 C 1.55164 * 110.86827 * 123.24361 * 2 1 3 7 7 C 1.55130 * 101.48269 * 82.76867 * 6 2 1 8 8 N 1.47421 * 104.72136 * 37.29279 * 7 6 2 9 9 C 1.34783 * 125.64569 * 155.82119 * 8 7 6 10 10 O 1.21587 * 120.00090 * 179.68681 * 9 8 7 11 11 N 1.34781 * 120.00017 * 359.68455 * 9 8 7 12 12 C 1.46499 * 119.99874 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47391 * 325.00213 * 12 11 9 14 14 C 1.50699 * 109.47060 * 205.00285 * 12 11 9 15 15 H 1.07999 * 120.00019 * 0.02562 * 14 12 11 16 16 C 1.37877 * 120.00129 * 180.02562 * 14 12 11 17 17 N 1.31519 * 119.99723 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99900 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47147 * 90.00197 * 18 16 14 20 20 H 1.48499 * 109.46797 * 209.99607 * 18 16 14 21 21 H 1.48500 * 109.47032 * 329.99738 * 18 16 14 22 22 C 1.53000 * 109.46840 * 85.00543 * 12 11 9 23 23 F 1.39898 * 109.46890 * 179.97438 * 22 12 11 24 24 F 1.39904 * 109.47059 * 299.99397 * 22 12 11 25 25 F 1.39895 * 109.47411 * 59.99655 * 22 12 11 26 26 C 1.47016 * 108.70917 * 335.54978 * 8 7 6 27 27 H 1.08998 * 109.47635 * 181.69304 * 1 2 3 28 28 H 1.09003 * 109.47098 * 301.69563 * 1 2 3 29 29 H 1.08995 * 109.47037 * 61.68982 * 1 2 3 30 30 H 0.96700 * 116.99630 * 180.02562 * 5 3 2 31 31 H 1.09005 * 110.99974 * 201.00320 * 6 2 1 32 32 H 1.08992 * 111.00794 * 324.81490 * 6 2 1 33 33 H 1.08993 * 110.49701 * 278.44767 * 7 6 2 34 34 H 1.09002 * 110.34093 * 156.05371 * 7 6 2 35 35 H 0.97002 * 119.99716 * 0.02562 * 11 9 8 36 36 H 0.97003 * 119.99231 * 179.97438 * 17 16 14 37 37 H 1.09007 * 109.88244 * 120.70493 * 26 8 7 38 38 H 1.09001 * 109.88697 * 241.72092 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0612 1.4102 0.0000 4 8 2.7387 1.8007 0.9211 5 8 1.7819 2.2326 -1.0235 6 6 2.0827 -0.7948 1.2126 7 6 2.0139 -2.2517 0.6842 8 7 2.3756 -2.1506 -0.7414 9 6 2.8901 -3.1437 -1.4936 10 8 3.1465 -2.9481 -2.6659 11 7 3.1205 -4.3536 -0.9462 12 6 3.6803 -5.4328 -1.7636 13 1 3.2942 -5.3564 -2.7801 14 6 3.2876 -6.7636 -1.1757 15 1 2.6813 -6.8018 -0.2828 16 6 3.7023 -7.9326 -1.7778 17 7 4.4403 -7.8861 -2.8655 18 14 3.2161 -9.5823 -1.0487 19 1 1.9288 -10.0255 -1.6417 20 1 4.2698 -10.5852 -1.3471 21 1 3.0632 -9.4476 0.4223 22 6 5.2057 -5.3158 -1.7873 23 9 5.7403 -6.3467 -2.5674 24 9 5.5702 -4.0803 -2.3331 25 9 5.7012 -5.4138 -0.4827 26 6 2.0760 -0.7892 -1.2086 27 1 -0.3634 -1.0272 0.0304 28 1 -0.3633 0.5400 0.8744 29 1 -0.3633 0.4873 -0.9047 30 1 2.1451 3.1277 -0.9791 31 1 3.1096 -0.5043 1.4348 32 1 1.4449 -0.6670 2.0871 33 1 1.0050 -2.6497 0.7923 34 1 2.7296 -2.8809 1.2134 35 1 2.9157 -4.5097 -0.0110 36 1 4.7323 -8.7086 -3.2888 37 1 2.9851 -0.3163 -1.5800 38 1 1.3270 -0.8251 -1.9997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593791197.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:42 Heat of formation + Delta-G solvation = -274.557048 kcal Electronic energy + Delta-G solvation = -29185.990284 eV Core-core repulsion = 24420.448506 eV Total energy + Delta-G solvation = -4765.541778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.41108 -48.04780 -47.72108 -42.01453 -40.90158 -38.83359 -37.15475 -36.48450 -34.65586 -33.83112 -30.64644 -30.28517 -27.66911 -26.57360 -25.50529 -24.12752 -23.24320 -21.21087 -20.80444 -19.75230 -18.92320 -18.87585 -18.75632 -18.62742 -17.73887 -17.60989 -16.96902 -16.83231 -16.50414 -16.33762 -15.42597 -15.18136 -14.96930 -14.75552 -14.65316 -14.46789 -14.36223 -14.29763 -14.18160 -13.99037 -13.80921 -13.75945 -13.34102 -13.10560 -12.98338 -12.74334 -12.72102 -12.58752 -12.53936 -12.20323 -12.11688 -11.86692 -11.57898 -11.54168 -11.27172 -10.66583 -10.21557 -9.57056 -8.19477 -6.50555 1.03829 1.45997 1.50200 1.52548 1.62504 1.99921 2.12214 2.38455 2.55192 2.95740 2.99755 3.15335 3.39978 3.75601 3.79001 3.88051 4.05229 4.17634 4.22123 4.26235 4.54485 4.58615 4.69731 4.80430 4.86356 4.88922 4.95461 5.05616 5.23326 5.31159 5.41846 5.53998 5.55571 5.66278 6.04167 6.54602 6.92722 7.00716 7.19793 7.57301 8.73479 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022666 B = 0.003572 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.009076 B = 7837.473242 C = 8330.500820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C 0.502 3.498 4 O -0.539 6.539 5 O -0.506 6.506 6 C -0.103 4.103 7 C 0.092 3.908 8 N -0.637 5.637 9 C 0.713 3.287 10 O -0.627 6.627 11 N -0.715 5.715 12 C 0.271 3.729 13 H 0.047 0.953 14 C -0.559 4.559 15 H 0.094 0.906 16 C 0.015 3.985 17 N -0.875 5.875 18 Si 0.985 3.015 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.257 1.257 22 C 0.411 3.589 23 F -0.150 7.150 24 F -0.221 7.221 25 F -0.203 7.203 26 C 0.143 3.857 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.429 0.571 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.409 0.591 36 H 0.268 0.732 37 H 0.048 0.952 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.696 14.088 9.470 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.062 4.062 3 C 0.345 3.655 4 O -0.428 6.428 5 O -0.320 6.320 6 C -0.141 4.141 7 C -0.029 4.029 8 N -0.376 5.376 9 C 0.415 3.585 10 O -0.508 6.508 11 N -0.369 5.369 12 C 0.163 3.837 13 H 0.065 0.935 14 C -0.596 4.596 15 H 0.112 0.888 16 C -0.191 4.191 17 N -0.509 5.509 18 Si 0.808 3.192 19 H -0.195 1.195 20 H -0.212 1.212 21 H -0.181 1.181 22 C 0.355 3.645 23 F -0.132 7.132 24 F -0.203 7.203 25 F -0.185 7.185 26 C 0.019 3.981 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.291 0.709 31 H 0.092 0.908 32 H 0.144 0.856 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.246 0.754 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.323 13.781 8.639 18.748 hybrid contribution 0.971 -0.150 0.143 0.993 sum -8.351 13.631 8.781 18.239 Atomic orbital electron populations 1.21855 0.87802 1.04819 1.04348 1.21554 1.00155 0.87199 0.97293 1.23049 0.75777 0.88038 0.78665 1.90726 1.37434 1.77259 1.37428 1.84516 1.72204 1.29573 1.45687 1.22879 1.03166 0.91549 0.96522 1.22718 1.02686 0.98333 0.79174 1.47436 1.67230 1.10591 1.12311 1.15690 0.78164 0.80542 0.84105 1.90892 1.60335 1.82533 1.16996 1.44979 1.67677 1.09416 1.14865 1.19221 0.82800 0.87262 0.94452 0.93522 1.21201 1.36378 0.87898 1.14108 0.88794 1.26017 0.93740 1.03969 0.95327 1.70546 1.31945 1.29289 1.19155 0.85132 0.77837 0.76930 0.79255 1.19479 1.21191 1.18079 1.23408 0.96195 0.72214 0.72684 1.93375 1.88452 1.56790 1.74535 1.93063 1.94029 1.46698 1.86486 1.92979 1.90231 1.95996 1.39316 1.21674 1.00083 0.80524 0.95776 0.89657 0.89728 0.90462 0.70851 0.90777 0.85627 0.88052 0.89755 0.75376 0.92174 0.93371 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 8.41 71.98 0.61 -0.90 16 2 C -0.06 -1.05 0.86 -51.74 -0.04 -1.10 16 3 C 0.50 9.56 6.83 71.23 0.49 10.04 16 4 O -0.54 -13.24 16.52 21.96 0.36 -12.88 16 5 O -0.51 -7.16 13.38 -51.46 -0.69 -7.85 16 6 C -0.10 -1.71 5.65 32.07 0.18 -1.53 16 7 C 0.09 1.81 6.27 86.93 0.55 2.35 16 8 N -0.64 -18.95 3.32 -829.31 -2.76 -21.70 16 9 C 0.71 29.45 8.02 179.05 1.44 30.89 16 10 O -0.63 -31.82 15.24 -3.99 -0.06 -31.88 16 11 N -0.72 -29.56 4.94 -461.40 -2.28 -31.84 16 12 C 0.27 13.74 2.21 44.25 0.10 13.84 16 13 H 0.05 2.74 7.58 -2.39 -0.02 2.72 16 14 C -0.56 -27.99 8.46 25.60 0.22 -27.77 16 15 H 0.09 4.28 7.74 -2.91 -0.02 4.25 16 16 C 0.01 0.75 5.20 84.65 0.44 1.19 16 17 N -0.88 -48.55 9.50 21.45 0.20 -48.35 16 18 Si 0.99 39.97 29.54 68.60 2.03 42.00 16 19 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.29 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 22 C 0.41 21.78 2.81 71.98 0.20 21.98 16 23 F -0.15 -8.60 12.91 44.97 0.58 -8.02 16 24 F -0.22 -11.86 15.68 44.97 0.70 -11.16 16 25 F -0.20 -10.11 16.94 44.97 0.76 -9.35 16 26 C 0.14 3.63 6.02 86.73 0.52 4.15 16 27 H 0.08 0.91 7.44 -2.39 -0.02 0.89 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.43 2.41 9.10 -74.06 -0.67 1.74 16 31 H 0.07 1.53 7.49 -2.38 -0.02 1.51 16 32 H 0.13 1.31 8.04 -2.39 -0.02 1.29 16 33 H 0.10 1.48 7.71 -2.39 -0.02 1.46 16 34 H 0.08 1.63 7.29 -2.39 -0.02 1.61 16 35 H 0.41 14.09 7.01 -92.71 -0.65 13.44 16 36 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 37 H 0.05 1.41 7.81 -2.38 -0.02 1.39 16 38 H 0.08 2.06 7.85 -2.39 -0.02 2.04 16 Total: -1.00 -73.94 329.70 3.36 -70.58 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -0.18 Total: 17.28 kcal Atomic # 6 Polarization: 48.47 SS G_CDS: 4.69 Total: 53.16 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -4.84 Total: -101.89 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.39 Total: -52.60 kcal Atomic # 9 Polarization: -30.57 SS G_CDS: 2.05 Total: -28.53 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -73.94 3.36 -70.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593791197.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.975 kcal (2) G-P(sol) polarization free energy of solvation -73.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds