Wall clock time and date at job start Tue Mar 31 2020 13:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 110.64042 * 2 1 4 4 O 1.20827 * 120.00236 * 118.30994 * 3 2 1 5 5 O 1.34230 * 120.00266 * 298.30888 * 3 2 1 6 6 C 1.55160 * 110.87034 * 123.24580 * 2 1 3 7 7 C 1.54910 * 101.58122 * 82.93271 * 6 2 1 8 8 N 1.47425 * 104.83231 * 37.00939 * 7 6 2 9 9 C 1.34771 * 125.64767 * 156.13676 * 8 7 6 10 10 O 1.21587 * 120.00199 * 179.69157 * 9 8 7 11 11 N 1.34778 * 120.00238 * 359.68759 * 9 8 7 12 12 C 1.46495 * 120.00121 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47328 * 35.00450 * 12 11 9 14 14 C 1.50701 * 109.47040 * 155.00190 * 12 11 9 15 15 H 1.08005 * 119.99920 * 0.02562 * 14 12 11 16 16 C 1.37877 * 120.00400 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99626 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00550 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47404 * 89.99962 * 18 16 14 20 20 H 1.48494 * 109.47205 * 210.00459 * 18 16 14 21 21 H 1.48499 * 109.46648 * 330.00088 * 18 16 14 22 22 C 1.52995 * 109.47380 * 275.00076 * 12 11 9 23 23 F 1.39909 * 109.47020 * 60.00111 * 22 12 11 24 24 F 1.39901 * 109.47511 * 180.02562 * 22 12 11 25 25 F 1.39899 * 109.47502 * 300.00501 * 22 12 11 26 26 C 1.47026 * 108.70074 * 335.87083 * 8 7 6 27 27 H 1.08998 * 109.46762 * 181.68620 * 1 2 3 28 28 H 1.08993 * 109.47001 * 301.69041 * 1 2 3 29 29 H 1.09008 * 109.46751 * 61.69182 * 1 2 3 30 30 H 0.96702 * 117.00041 * 179.97438 * 5 3 2 31 31 H 1.08991 * 111.00600 * 201.00889 * 6 2 1 32 32 H 1.09004 * 111.00084 * 324.82335 * 6 2 1 33 33 H 1.09001 * 110.36852 * 278.17238 * 7 6 2 34 34 H 1.08998 * 110.36449 * 155.84885 * 7 6 2 35 35 H 0.97000 * 119.99585 * 0.02562 * 11 9 8 36 36 H 0.96999 * 119.99879 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.87531 * 120.47707 * 26 8 7 38 38 H 1.08996 * 109.88343 * 241.48426 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0613 1.4102 0.0000 4 8 2.7386 1.8007 0.9212 5 8 1.7820 2.2327 -1.0234 6 6 2.0828 -0.7948 1.2125 7 6 2.0191 -2.2501 0.6855 8 7 2.3757 -2.1507 -0.7415 9 6 2.8862 -3.1449 -1.4947 10 8 3.1386 -2.9505 -2.6681 11 7 3.1171 -4.3546 -0.9472 12 6 3.6716 -5.4355 -1.7661 13 1 4.3720 -5.0199 -2.4905 14 6 4.3907 -6.4192 -0.8794 15 1 4.4303 -6.2558 0.1875 16 6 4.9971 -7.5283 -1.4299 17 7 4.9483 -7.7275 -2.7290 18 14 5.8878 -8.7481 -0.3308 19 1 4.9372 -9.7975 0.1164 20 1 6.9992 -9.3772 -1.0884 21 1 6.4353 -8.0390 0.8535 22 6 2.5375 -6.1490 -2.5046 23 9 1.8698 -5.2357 -3.3278 24 9 3.0668 -7.1816 -3.2862 25 9 1.6384 -6.6824 -1.5749 26 6 2.0761 -0.7891 -1.2085 27 1 -0.3633 -1.0272 0.0302 28 1 -0.3633 0.5398 0.8744 29 1 -0.3633 0.4874 -0.9049 30 1 2.1446 3.1280 -0.9786 31 1 3.1095 -0.5044 1.4348 32 1 1.4448 -0.6671 2.0870 33 1 1.0116 -2.6505 0.7977 34 1 2.7382 -2.8765 1.2134 35 1 2.9155 -4.5098 -0.0112 36 1 5.3753 -8.5076 -3.1164 37 1 2.9852 -0.3163 -1.5799 38 1 1.3272 -0.8250 -1.9997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593791203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:44 Heat of formation + Delta-G solvation = -274.472827 kcal Electronic energy + Delta-G solvation = -29163.351769 eV Core-core repulsion = 24397.813643 eV Total energy + Delta-G solvation = -4765.538125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.39131 -48.02276 -47.70487 -42.01565 -40.90105 -38.83692 -37.14957 -36.48614 -34.65892 -33.83462 -30.66320 -30.28560 -27.67817 -26.57214 -25.50046 -24.11942 -23.23863 -21.21116 -20.80565 -19.75271 -18.91829 -18.86685 -18.73973 -18.59367 -17.81530 -17.57935 -16.95812 -16.78102 -16.45229 -16.41932 -15.48925 -15.11270 -14.96526 -14.73990 -14.59641 -14.46335 -14.41507 -14.28375 -14.13366 -13.96594 -13.84867 -13.76459 -13.35248 -13.06248 -12.99221 -12.77739 -12.70171 -12.63510 -12.52979 -12.19956 -12.12297 -11.86371 -11.56075 -11.54274 -11.27461 -10.68133 -10.21143 -9.57172 -8.19855 -6.50978 1.04184 1.45767 1.49241 1.51859 1.61646 2.02739 2.09458 2.37728 2.56441 2.95541 2.99484 3.15531 3.40364 3.74721 3.80278 3.88703 4.05734 4.18800 4.22381 4.26189 4.54464 4.58905 4.68800 4.80095 4.85675 4.87724 4.95387 5.05864 5.23183 5.29790 5.41689 5.54403 5.55399 5.65919 6.04067 6.53960 6.93349 7.00640 7.19320 7.57215 8.72973 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.003574 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.802471 B = 7833.191402 C = 8368.148566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.061 4.061 3 C 0.503 3.497 4 O -0.537 6.537 5 O -0.507 6.507 6 C -0.102 4.102 7 C 0.092 3.908 8 N -0.637 5.637 9 C 0.713 3.287 10 O -0.627 6.627 11 N -0.715 5.715 12 C 0.270 3.730 13 H 0.045 0.955 14 C -0.560 4.560 15 H 0.093 0.907 16 C 0.015 3.985 17 N -0.875 5.875 18 Si 0.985 3.015 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.257 1.257 22 C 0.413 3.587 23 F -0.219 7.219 24 F -0.151 7.151 25 F -0.202 7.202 26 C 0.143 3.857 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.430 0.570 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.409 0.591 36 H 0.269 0.731 37 H 0.052 0.948 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.915 14.353 9.648 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.062 4.062 3 C 0.346 3.654 4 O -0.427 6.427 5 O -0.320 6.320 6 C -0.140 4.140 7 C -0.030 4.030 8 N -0.376 5.376 9 C 0.415 3.585 10 O -0.508 6.508 11 N -0.369 5.369 12 C 0.162 3.838 13 H 0.063 0.937 14 C -0.597 4.597 15 H 0.111 0.889 16 C -0.190 4.190 17 N -0.509 5.509 18 Si 0.808 3.192 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.181 1.181 22 C 0.357 3.643 23 F -0.201 7.201 24 F -0.132 7.132 25 F -0.184 7.184 26 C 0.019 3.981 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.292 0.708 31 H 0.096 0.904 32 H 0.143 0.857 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.246 0.754 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.633 14.019 8.789 18.662 hybrid contribution 0.561 -0.285 0.051 0.632 sum -8.072 13.733 8.840 18.218 Atomic orbital electron populations 1.21857 0.88058 1.04657 1.04347 1.21547 1.00000 0.87329 0.97362 1.23000 0.75779 0.87966 0.78673 1.90725 1.37408 1.77229 1.37358 1.84517 1.72248 1.29561 1.45693 1.22833 1.03324 0.91395 0.96408 1.22671 1.02587 0.98519 0.79214 1.47434 1.67319 1.10607 1.12192 1.15683 0.78220 0.80578 0.84008 1.90892 1.60356 1.82707 1.16801 1.44973 1.68334 1.09145 1.14487 1.19206 0.87393 0.85076 0.92116 0.93727 1.21199 1.36108 1.07591 0.94784 0.88929 1.26000 0.96445 0.99728 0.96825 1.70541 1.39580 1.28819 1.11933 0.85139 0.77690 0.77993 0.78377 1.19843 1.20918 1.18054 1.23306 0.84159 0.78762 0.78078 1.93066 1.83615 1.68167 1.75233 1.93375 1.84332 1.59456 1.76025 1.92981 1.71063 1.87638 1.66713 1.21669 1.00152 0.80543 0.95704 0.89937 0.89651 0.90524 0.70822 0.90436 0.85708 0.88652 0.89338 0.75378 0.92157 0.92980 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.41 71.98 0.61 -0.99 16 2 C -0.06 -1.06 0.86 -51.74 -0.04 -1.10 16 3 C 0.50 9.41 6.83 71.23 0.49 9.90 16 4 O -0.54 -12.91 16.52 21.96 0.36 -12.54 16 5 O -0.51 -7.07 13.38 -51.41 -0.69 -7.75 16 6 C -0.10 -1.65 5.63 31.99 0.18 -1.47 16 7 C 0.09 1.80 6.26 86.86 0.54 2.34 16 8 N -0.64 -18.97 3.33 -829.77 -2.76 -21.73 16 9 C 0.71 29.47 8.02 179.06 1.44 30.91 16 10 O -0.63 -31.82 15.24 -3.99 -0.06 -31.88 16 11 N -0.72 -29.58 4.94 -461.43 -2.28 -31.86 16 12 C 0.27 13.72 2.21 44.24 0.10 13.81 16 13 H 0.04 2.64 7.58 -2.39 -0.02 2.62 16 14 C -0.56 -28.19 8.47 25.60 0.22 -27.97 16 15 H 0.09 4.26 7.74 -2.91 -0.02 4.24 16 16 C 0.02 0.79 5.20 84.65 0.44 1.23 16 17 N -0.87 -48.56 9.50 21.45 0.20 -48.36 16 18 Si 0.98 40.25 29.54 68.60 2.03 42.27 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 20 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 22 C 0.41 21.62 2.81 71.98 0.20 21.82 16 23 F -0.22 -11.51 15.68 44.97 0.70 -10.80 16 24 F -0.15 -8.56 12.91 44.97 0.58 -7.97 16 25 F -0.20 -9.86 16.94 44.97 0.76 -9.09 16 26 C 0.14 3.64 6.02 86.73 0.52 4.16 16 27 H 0.08 0.97 7.47 -2.39 -0.02 0.96 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.43 2.28 9.10 -74.06 -0.67 1.61 16 31 H 0.08 1.53 7.49 -2.39 -0.02 1.51 16 32 H 0.12 1.29 8.04 -2.39 -0.02 1.27 16 33 H 0.10 1.49 7.73 -2.39 -0.02 1.47 16 34 H 0.09 1.66 7.30 -2.39 -0.02 1.64 16 35 H 0.41 14.09 7.02 -92.71 -0.65 13.44 16 36 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.05 1.48 7.81 -2.38 -0.02 1.47 16 38 H 0.08 2.03 7.85 -2.39 -0.02 2.01 16 Total: -1.00 -73.47 329.74 3.35 -70.12 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.18 Total: 16.97 kcal Atomic # 6 Polarization: 47.94 SS G_CDS: 4.69 Total: 52.63 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -4.84 Total: -101.95 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -0.39 Total: -52.18 kcal Atomic # 9 Polarization: -29.92 SS G_CDS: 2.05 Total: -27.87 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.27 kcal Total: -73.47 3.35 -70.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593791203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.353 kcal (2) G-P(sol) polarization free energy of solvation -73.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds