Wall clock time and date at job start Tue Mar 31 2020 13:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 110.37432 * 2 1 4 4 O 1.20817 * 120.00360 * 240.73464 * 3 2 1 5 5 O 1.34231 * 119.99633 * 60.73508 * 3 2 1 6 6 C 1.54624 * 110.32619 * 237.81134 * 2 1 3 7 7 C 1.54598 * 102.90975 * 262.80803 * 6 2 1 8 8 N 1.48118 * 103.42600 * 322.86842 * 7 6 2 9 9 C 1.34768 * 127.03067 * 219.29117 * 8 7 6 10 10 O 1.21596 * 119.99714 * 179.68550 * 9 8 7 11 11 N 1.34776 * 120.00584 * 359.68045 * 9 8 7 12 12 C 1.46499 * 120.00348 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47197 * 34.99139 * 12 11 9 14 14 C 1.50701 * 109.47260 * 155.00133 * 12 11 9 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 12 11 16 16 C 1.37871 * 119.99694 * 180.27562 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.53005 * 109.46437 * 274.99648 * 12 11 9 23 23 F 1.39897 * 109.47542 * 299.99848 * 22 12 11 24 24 F 1.39898 * 109.46978 * 60.00240 * 22 12 11 25 25 F 1.39909 * 109.46562 * 179.97438 * 22 12 11 26 26 C 1.47488 * 105.92876 * 39.02464 * 8 7 6 27 27 H 1.09003 * 109.46939 * 299.26632 * 1 2 3 28 28 H 1.09004 * 109.46968 * 59.26180 * 1 2 3 29 29 H 1.08996 * 109.47347 * 179.26395 * 1 2 3 30 30 H 0.96704 * 117.00156 * 179.97438 * 5 3 2 31 31 H 1.08996 * 110.73364 * 21.29776 * 6 2 1 32 32 H 1.08996 * 110.73629 * 144.62347 * 6 2 1 33 33 H 1.08995 * 110.61514 * 204.34834 * 7 6 2 34 34 H 1.09005 * 110.54382 * 81.35045 * 7 6 2 35 35 H 0.97000 * 119.99698 * 359.97438 * 11 9 8 36 36 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.91361 * 94.14183 * 26 8 7 38 38 H 1.09005 * 109.90768 * 215.41963 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4127 0.0000 4 8 2.7445 1.8010 -0.9127 5 8 1.7556 2.2396 1.0141 6 6 2.0671 -0.7724 -1.2271 7 6 2.3640 -2.1753 -0.6493 8 7 2.8804 -1.8858 0.7084 9 6 3.8922 -2.5108 1.3423 10 8 4.2158 -2.1627 2.4615 11 7 4.5455 -3.5217 0.7357 12 6 5.6450 -4.2015 1.4250 13 1 5.4292 -4.2515 2.4923 14 6 5.7952 -5.5971 0.8768 15 1 5.1371 -5.9433 0.0935 16 6 6.7687 -6.4341 1.3794 17 7 7.5699 -6.0126 2.3334 18 14 6.9498 -8.1668 0.7053 19 1 7.8987 -8.1568 -0.4370 20 1 7.4682 -9.0611 1.7714 21 1 5.6268 -8.6599 0.2454 22 6 6.9440 -3.4239 1.2033 23 9 7.2211 -3.3596 -0.1665 24 9 6.8045 -2.1283 1.7122 25 9 7.9940 -4.0727 1.8620 26 6 2.0649 -0.7694 1.2221 27 1 -0.3633 0.5024 0.8965 28 1 -0.3633 0.5253 -0.8833 29 1 -0.3634 -1.0275 -0.0132 30 1 2.1152 3.1362 0.9703 31 1 1.3105 -0.8276 -2.0098 32 1 2.9806 -0.3119 -1.6034 33 1 3.1193 -2.6848 -1.2476 34 1 1.4507 -2.7678 -0.5952 35 1 4.2870 -3.7997 -0.1569 36 1 8.2545 -6.6016 2.6873 37 1 1.2329 -1.1571 1.8100 38 1 2.6809 -0.1110 1.8348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593791208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:51 Heat of formation + Delta-G solvation = -249.053719 kcal Electronic energy + Delta-G solvation = -29333.199996 eV Core-core repulsion = 24568.764126 eV Total energy + Delta-G solvation = -4764.435870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.30582 -45.95870 -45.57595 -41.06558 -39.51360 -37.60546 -36.29431 -34.63911 -33.20903 -32.35175 -29.72091 -28.54195 -26.52598 -24.68165 -24.38633 -23.18918 -21.40902 -19.91911 -19.57920 -18.30358 -18.03837 -17.00285 -16.81442 -16.66838 -16.47396 -16.26263 -15.65224 -15.31849 -15.17450 -14.74283 -14.13277 -13.91625 -13.58439 -13.15863 -13.09421 -12.88559 -12.77909 -12.53875 -12.47435 -12.35573 -12.25914 -12.21017 -11.94165 -11.85634 -11.77919 -11.70184 -11.31758 -11.14382 -10.99281 -10.88468 -10.78944 -10.62430 -10.39013 -9.65689 -9.58263 -8.73991 -8.60060 -8.14438 -6.23092 -4.47223 1.97457 2.68917 2.95050 3.19099 3.25411 3.27973 3.69544 4.02281 4.17280 4.26767 4.48949 4.56421 4.66640 4.92955 4.94398 4.97995 5.14157 5.28442 5.40247 5.50054 5.58002 5.62556 5.72688 5.80450 5.86056 5.90967 5.96290 6.19392 6.28285 6.33623 6.86775 7.19986 7.37839 7.61309 7.65213 7.67543 8.48548 8.57534 9.11621 9.23292 10.68721 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022207 B = 0.003760 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.555269 B = 7445.047636 C = 7948.868076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 C 0.494 3.506 4 O -0.509 6.509 5 O -0.512 6.512 6 C -0.120 4.120 7 C 0.101 3.899 8 N -0.645 5.645 9 C 0.722 3.278 10 O -0.578 6.578 11 N -0.722 5.722 12 C 0.262 3.738 13 H 0.086 0.914 14 C -0.551 4.551 15 H 0.077 0.923 16 C 0.065 3.935 17 N -0.839 5.839 18 Si 0.916 3.084 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.270 1.270 22 C 0.416 3.584 23 F -0.210 7.210 24 F -0.217 7.217 25 F -0.137 7.137 26 C 0.142 3.858 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.411 0.589 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.394 0.606 36 H 0.268 0.732 37 H 0.080 0.920 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.982 9.622 -5.962 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C 0.335 3.665 4 O -0.396 6.396 5 O -0.323 6.323 6 C -0.159 4.159 7 C -0.022 4.022 8 N -0.386 5.386 9 C 0.424 3.576 10 O -0.455 6.455 11 N -0.375 5.375 12 C 0.156 3.844 13 H 0.103 0.897 14 C -0.589 4.589 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.742 3.258 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.195 1.195 22 C 0.359 3.641 23 F -0.192 7.192 24 F -0.199 7.199 25 F -0.119 7.119 26 C 0.018 3.982 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.269 0.731 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.228 0.772 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.385 9.463 -5.130 17.176 hybrid contribution 0.618 -0.111 -0.911 1.106 sum -12.767 9.351 -6.041 16.939 Atomic orbital electron populations 1.21871 0.90269 1.03814 1.03263 1.21452 0.98277 0.88194 0.99147 1.23120 0.76743 0.87949 0.78683 1.90718 1.35709 1.76724 1.36474 1.84525 1.72148 1.28060 1.47604 1.22824 1.03235 0.94624 0.95185 1.22422 0.99722 0.96412 0.83671 1.47825 1.35724 1.37247 1.17775 1.15495 0.78229 0.79899 0.83985 1.90935 1.68331 1.67838 1.18394 1.45271 1.36457 1.35384 1.20387 1.19639 0.77600 0.89910 0.97227 0.89661 1.20856 1.19823 0.94773 1.23402 0.90499 1.25076 0.94586 0.99704 0.94995 1.70400 1.17525 1.34970 1.24359 0.86204 0.78640 0.82281 0.78639 1.20227 1.20799 1.19502 1.23164 0.91319 0.76779 0.72828 1.92983 1.95187 1.96456 1.34561 1.93074 1.96294 1.43067 1.87428 1.93400 1.59844 1.78665 1.79947 1.21714 0.95079 0.88078 0.93353 0.90811 0.91650 0.90362 0.73051 0.89018 0.88773 0.89698 0.90631 0.77172 0.92099 0.90225 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 8.17 37.16 0.30 -0.60 16 2 C -0.07 -0.69 0.91 -154.29 -0.14 -0.83 16 3 C 0.49 5.64 6.75 36.00 0.24 5.88 16 4 O -0.51 -7.34 16.20 -18.74 -0.30 -7.64 16 5 O -0.51 -4.54 13.30 -39.26 -0.52 -5.06 16 6 C -0.12 -1.20 5.94 -25.04 -0.15 -1.34 16 7 C 0.10 1.12 6.92 -2.31 -0.02 1.10 16 8 N -0.65 -10.01 3.29 -175.69 -0.58 -10.59 16 9 C 0.72 15.00 8.07 -86.93 -0.70 14.30 16 10 O -0.58 -14.34 15.25 5.28 0.08 -14.26 16 11 N -0.72 -15.19 4.96 -59.81 -0.30 -15.48 16 12 C 0.26 6.62 2.21 -69.08 -0.15 6.46 16 13 H 0.09 2.41 7.58 -51.93 -0.39 2.01 16 14 C -0.55 -14.05 8.46 -34.44 -0.29 -14.34 16 15 H 0.08 1.84 7.74 -52.49 -0.41 1.43 16 16 C 0.07 1.69 5.20 -17.82 -0.09 1.60 16 17 N -0.84 -23.07 9.51 55.43 0.53 -22.55 16 18 Si 0.92 19.99 29.54 -169.99 -5.02 14.97 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 C 0.42 10.92 2.81 37.16 0.10 11.02 16 23 F -0.21 -5.30 16.94 2.25 0.04 -5.27 16 24 F -0.22 -5.74 15.67 2.25 0.04 -5.71 16 25 F -0.14 -3.86 12.93 2.25 0.03 -3.83 16 26 C 0.14 1.82 6.26 -2.98 -0.02 1.81 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.41 1.99 9.10 45.56 0.41 2.41 16 31 H 0.09 0.66 7.85 -51.93 -0.41 0.25 16 32 H 0.09 1.16 6.92 -51.93 -0.36 0.80 16 33 H 0.08 0.93 6.83 -51.93 -0.35 0.57 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.39 7.15 6.87 -40.82 -0.28 6.87 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.08 0.89 7.68 -51.93 -0.40 0.49 16 38 H 0.08 1.22 7.54 -51.93 -0.39 0.83 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -34.15 329.62 -5.36 -39.51 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -3.40 Total: 5.87 kcal Atomic # 6 Polarization: 25.98 SS G_CDS: -0.91 Total: 25.07 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.35 Total: -48.62 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.75 Total: -26.96 kcal Atomic # 9 Polarization: -14.91 SS G_CDS: 0.10 Total: -14.81 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.15 -5.36 -39.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593791208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.542 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds