Wall clock time and date at job start Tue Mar 31 2020 13:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 110.37432 * 2 1 4 4 O 1.20817 * 120.00360 * 240.73464 * 3 2 1 5 5 O 1.34231 * 119.99633 * 60.73508 * 3 2 1 6 6 C 1.54624 * 110.32619 * 237.81134 * 2 1 3 7 7 C 1.54598 * 102.90975 * 262.80803 * 6 2 1 8 8 N 1.48118 * 103.42600 * 322.86842 * 7 6 2 9 9 C 1.34768 * 127.03067 * 219.29117 * 8 7 6 10 10 O 1.21596 * 119.99714 * 179.68550 * 9 8 7 11 11 N 1.34776 * 120.00584 * 359.68045 * 9 8 7 12 12 C 1.46499 * 120.00348 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47197 * 34.99139 * 12 11 9 14 14 C 1.50701 * 109.47260 * 155.00133 * 12 11 9 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 12 11 16 16 C 1.37871 * 119.99694 * 180.27562 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.53005 * 109.46437 * 274.99648 * 12 11 9 23 23 F 1.39897 * 109.47542 * 299.99848 * 22 12 11 24 24 F 1.39898 * 109.46978 * 60.00240 * 22 12 11 25 25 F 1.39909 * 109.46562 * 179.97438 * 22 12 11 26 26 C 1.47488 * 105.92876 * 39.02464 * 8 7 6 27 27 H 1.09003 * 109.46939 * 299.26632 * 1 2 3 28 28 H 1.09004 * 109.46968 * 59.26180 * 1 2 3 29 29 H 1.08996 * 109.47347 * 179.26395 * 1 2 3 30 30 H 0.96704 * 117.00156 * 179.97438 * 5 3 2 31 31 H 1.08996 * 110.73364 * 21.29776 * 6 2 1 32 32 H 1.08996 * 110.73629 * 144.62347 * 6 2 1 33 33 H 1.08995 * 110.61514 * 204.34834 * 7 6 2 34 34 H 1.09005 * 110.54382 * 81.35045 * 7 6 2 35 35 H 0.97000 * 119.99698 * 359.97438 * 11 9 8 36 36 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.91361 * 94.14183 * 26 8 7 38 38 H 1.09005 * 109.90768 * 215.41963 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4127 0.0000 4 8 2.7445 1.8010 -0.9127 5 8 1.7556 2.2396 1.0141 6 6 2.0671 -0.7724 -1.2271 7 6 2.3640 -2.1753 -0.6493 8 7 2.8804 -1.8858 0.7084 9 6 3.8922 -2.5108 1.3423 10 8 4.2158 -2.1627 2.4615 11 7 4.5455 -3.5217 0.7357 12 6 5.6450 -4.2015 1.4250 13 1 5.4292 -4.2515 2.4923 14 6 5.7952 -5.5971 0.8768 15 1 5.1371 -5.9433 0.0935 16 6 6.7687 -6.4341 1.3794 17 7 7.5699 -6.0126 2.3334 18 14 6.9498 -8.1668 0.7053 19 1 7.8987 -8.1568 -0.4370 20 1 7.4682 -9.0611 1.7714 21 1 5.6268 -8.6599 0.2454 22 6 6.9440 -3.4239 1.2033 23 9 7.2211 -3.3596 -0.1665 24 9 6.8045 -2.1283 1.7122 25 9 7.9940 -4.0727 1.8620 26 6 2.0649 -0.7694 1.2221 27 1 -0.3633 0.5024 0.8965 28 1 -0.3633 0.5253 -0.8833 29 1 -0.3634 -1.0275 -0.0132 30 1 2.1152 3.1362 0.9703 31 1 1.3105 -0.8276 -2.0098 32 1 2.9806 -0.3119 -1.6034 33 1 3.1193 -2.6848 -1.2476 34 1 1.4507 -2.7678 -0.5952 35 1 4.2870 -3.7997 -0.1569 36 1 8.2545 -6.6016 2.6873 37 1 1.2329 -1.1571 1.8100 38 1 2.6809 -0.1110 1.8348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593791208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:50 Heat of formation + Delta-G solvation = -273.962329 kcal Electronic energy + Delta-G solvation = -29334.280114 eV Core-core repulsion = 24568.764126 eV Total energy + Delta-G solvation = -4765.515989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.43257 -48.07241 -47.73969 -42.02660 -40.86283 -38.80128 -37.17472 -36.49411 -34.66819 -33.87420 -30.66052 -30.30437 -27.44313 -26.58116 -25.59500 -24.14341 -23.28629 -21.25489 -20.73930 -19.75071 -18.92034 -18.89766 -18.77441 -18.63920 -17.79461 -17.51391 -16.98845 -16.96341 -16.49577 -16.35490 -15.36672 -15.17128 -14.98139 -14.82606 -14.64785 -14.48558 -14.36494 -14.29933 -14.06037 -13.93847 -13.89906 -13.59818 -13.36057 -13.09679 -12.98253 -12.73737 -12.72510 -12.64461 -12.53859 -12.20972 -12.10388 -11.76526 -11.56410 -11.52803 -11.28425 -10.69250 -10.24205 -9.60789 -8.20429 -6.51843 1.06981 1.45428 1.49497 1.51991 1.62053 1.98240 2.11058 2.37600 2.53311 2.94728 2.99546 3.21811 3.45077 3.77108 3.82240 3.86518 4.12496 4.15452 4.23066 4.31732 4.51989 4.60273 4.72432 4.81716 4.87723 4.92627 4.98469 5.10324 5.22242 5.36003 5.40612 5.54174 5.54618 5.65129 6.05811 6.53513 6.90694 7.00068 7.18684 7.56678 8.72788 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022207 B = 0.003760 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.555269 B = 7445.047636 C = 7948.868076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.062 4.062 3 C 0.492 3.508 4 O -0.545 6.545 5 O -0.507 6.507 6 C -0.114 4.114 7 C 0.095 3.905 8 N -0.644 5.644 9 C 0.715 3.285 10 O -0.629 6.629 11 N -0.716 5.716 12 C 0.271 3.729 13 H 0.047 0.953 14 C -0.559 4.559 15 H 0.094 0.906 16 C 0.015 3.985 17 N -0.876 5.876 18 Si 0.986 3.014 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.254 1.254 22 C 0.411 3.589 23 F -0.204 7.204 24 F -0.222 7.222 25 F -0.150 7.150 26 C 0.137 3.863 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.427 0.573 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.409 0.591 36 H 0.269 0.731 37 H 0.101 0.899 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.447 8.862 -7.845 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C 0.335 3.665 4 O -0.436 6.436 5 O -0.320 6.320 6 C -0.152 4.152 7 C -0.026 4.026 8 N -0.382 5.382 9 C 0.417 3.583 10 O -0.509 6.509 11 N -0.370 5.370 12 C 0.163 3.837 13 H 0.065 0.935 14 C -0.596 4.596 15 H 0.112 0.888 16 C -0.191 4.191 17 N -0.510 5.510 18 Si 0.809 3.191 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.178 1.178 22 C 0.355 3.645 23 F -0.186 7.186 24 F -0.204 7.204 25 F -0.131 7.131 26 C 0.013 3.987 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.289 0.711 31 H 0.148 0.852 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.246 0.754 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.924 8.746 -7.061 19.492 hybrid contribution 1.354 0.259 -0.296 1.410 sum -14.570 9.005 -7.357 18.641 Atomic orbital electron populations 1.21908 0.87011 1.05408 1.04260 1.21508 1.00578 0.86748 0.97524 1.23469 0.75917 0.88723 0.78357 1.90710 1.37292 1.77606 1.37945 1.84494 1.71804 1.29176 1.46531 1.22823 1.03182 0.93325 0.95920 1.22816 1.01006 0.97752 0.81025 1.47823 1.34159 1.36885 1.19378 1.15663 0.79082 0.79900 0.83643 1.90890 1.70087 1.69204 1.20748 1.44981 1.35674 1.35548 1.20825 1.19223 0.78234 0.90581 0.95625 0.93537 1.21201 1.20059 0.94703 1.23629 0.88789 1.26027 0.94141 1.03846 0.95058 1.70535 1.18221 1.36499 1.25741 0.85117 0.79161 0.77054 0.77723 1.20036 1.20860 1.17784 1.23426 0.91590 0.76614 0.72908 1.92979 1.95184 1.96431 1.33972 1.93060 1.96307 1.43432 1.87562 1.93374 1.60549 1.78922 1.80287 1.21944 0.94749 0.87243 0.94736 0.90367 0.90168 0.88455 0.71102 0.85236 0.91577 0.89686 0.86972 0.75425 0.92144 0.88056 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.17 71.98 0.59 -0.63 16 2 C -0.06 -1.09 0.91 -52.04 -0.05 -1.14 16 3 C 0.49 10.71 6.75 71.23 0.48 11.19 16 4 O -0.55 -15.52 16.20 21.99 0.36 -15.17 16 5 O -0.51 -8.39 13.30 -51.43 -0.68 -9.08 16 6 C -0.11 -1.97 5.94 31.69 0.19 -1.78 16 7 C 0.10 1.85 6.92 86.61 0.60 2.45 16 8 N -0.64 -19.38 3.29 -828.02 -2.73 -22.11 16 9 C 0.72 30.11 8.07 179.06 1.45 31.55 16 10 O -0.63 -32.39 15.25 -4.02 -0.06 -32.46 16 11 N -0.72 -30.21 4.96 -461.40 -2.29 -32.49 16 12 C 0.27 13.97 2.21 44.25 0.10 14.07 16 13 H 0.05 2.77 7.58 -2.39 -0.02 2.75 16 14 C -0.56 -28.29 8.46 25.60 0.22 -28.07 16 15 H 0.09 4.33 7.74 -2.91 -0.02 4.30 16 16 C 0.01 0.75 5.20 84.65 0.44 1.19 16 17 N -0.88 -48.95 9.51 21.45 0.20 -48.74 16 18 Si 0.99 40.26 29.54 68.60 2.03 42.29 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 22 C 0.41 22.11 2.81 71.98 0.20 22.31 16 23 F -0.20 -10.34 16.94 44.97 0.76 -9.58 16 24 F -0.22 -12.14 15.67 44.97 0.70 -11.44 16 25 F -0.15 -8.68 12.93 44.97 0.58 -8.10 16 26 C 0.14 3.36 6.26 86.53 0.54 3.90 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.43 3.71 9.10 -74.05 -0.67 3.04 16 31 H 0.13 1.28 7.85 -2.39 -0.02 1.26 16 32 H 0.07 1.56 6.92 -2.39 -0.02 1.54 16 33 H 0.08 1.66 6.83 -2.39 -0.02 1.64 16 34 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.41 14.42 6.87 -92.71 -0.64 13.78 16 36 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 37 H 0.10 2.05 7.68 -2.39 -0.02 2.04 16 38 H 0.05 1.62 7.54 -2.38 -0.02 1.60 16 Total: -1.00 -76.75 329.62 3.46 -73.28 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -0.17 Total: 18.56 kcal Atomic # 6 Polarization: 50.28 SS G_CDS: 4.75 Total: 55.04 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -4.81 Total: -103.35 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -0.39 Total: -56.70 kcal Atomic # 9 Polarization: -31.17 SS G_CDS: 2.05 Total: -29.12 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -76.75 3.46 -73.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593791208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.677 kcal (2) G-P(sol) polarization free energy of solvation -76.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds