Wall clock time and date at job start Tue Mar 31 2020 13:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99643 * 2 1 4 4 H 1.48497 * 109.47170 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47106 * 120.00281 * 3 2 1 6 6 H 1.48503 * 109.46721 * 239.99766 * 3 2 1 7 7 C 1.37874 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99927 * 152.69593 * 7 2 1 9 9 C 1.50700 * 120.00359 * 332.69452 * 7 2 1 10 10 H 1.08998 * 109.47124 * 54.13931 * 9 7 2 11 11 N 1.46495 * 109.47448 * 174.14255 * 9 7 2 12 12 C 1.34772 * 120.00187 * 205.00142 * 11 9 7 13 13 O 1.21587 * 120.00251 * 5.34216 * 12 11 9 14 14 N 1.34780 * 120.00368 * 185.34121 * 12 11 9 15 15 C 1.46929 * 120.62741 * 5.08674 * 14 12 11 16 16 C 1.53618 * 108.54741 * 126.36611 * 15 14 12 17 17 C 1.53044 * 109.23693 * 54.85487 * 16 15 14 18 18 C 1.50710 * 109.45634 * 178.49267 * 17 16 15 19 19 O 1.20829 * 119.99972 * 120.06858 * 18 17 16 20 20 O 1.34230 * 119.99924 * 300.06517 * 18 17 16 21 21 C 1.53036 * 109.53936 * 298.50781 * 17 16 15 22 22 C 1.46922 * 120.63299 * 185.36412 * 14 12 11 23 23 C 1.53006 * 109.47088 * 294.14419 * 9 7 2 24 24 F 1.39903 * 109.47018 * 56.93733 * 23 9 7 25 25 F 1.39897 * 109.47118 * 176.93911 * 23 9 7 26 26 F 1.39900 * 109.46610 * 296.93946 * 23 9 7 27 27 H 0.97004 * 119.99701 * 174.49156 * 1 2 3 28 28 H 0.97000 * 120.00179 * 24.99811 * 11 9 7 29 29 H 1.08998 * 109.58390 * 246.20341 * 15 14 12 30 30 H 1.09002 * 109.58817 * 6.62344 * 15 14 12 31 31 H 1.08997 * 109.63668 * 294.86370 * 16 15 14 32 32 H 1.09000 * 109.46128 * 174.73509 * 16 15 14 33 33 H 1.08997 * 109.45455 * 58.52695 * 17 16 15 34 34 H 0.96694 * 116.99673 * 180.02562 * 20 18 17 35 35 H 1.09001 * 109.50275 * 301.41851 * 21 17 16 36 36 H 1.09003 * 109.52598 * 181.33366 * 21 17 16 37 37 H 1.08993 * 109.58555 * 353.37061 * 22 14 12 38 38 H 1.08996 * 109.58604 * 113.65862 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6965 1.2124 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 2.9944 -1.2463 -0.4285 9 6 1.3771 -2.4262 0.5998 10 1 0.4026 -2.5968 0.1422 11 7 2.2413 -3.5832 0.3539 12 6 1.7150 -4.8236 0.3252 13 8 0.5113 -4.9753 0.4062 14 7 2.5228 -5.8959 0.2068 15 6 3.9835 -5.7378 0.2196 16 6 4.5659 -6.6650 1.2971 17 6 4.0912 -8.0971 1.0403 18 6 4.6897 -9.0171 2.0731 19 8 3.9693 -9.6531 2.8056 20 8 6.0230 -9.1301 2.1792 21 6 2.5646 -8.1542 1.1302 22 6 1.9595 -7.2445 0.0563 23 6 1.2051 -2.2293 2.1073 24 9 0.4374 -1.0838 2.3434 25 9 0.5594 -3.3441 2.6526 26 9 2.4615 -2.0797 2.7043 27 1 -0.4850 -0.8362 -0.0806 28 1 3.1925 -3.4566 0.2116 29 1 4.3887 -6.0069 -0.7559 30 1 4.2370 -4.7031 0.4500 31 1 4.2277 -6.3406 2.2812 32 1 5.6546 -6.6298 1.2567 33 1 4.4085 -8.4119 0.0462 34 1 6.3600 -9.7328 2.8561 35 1 2.2452 -7.8158 2.1158 36 1 2.2283 -9.1788 0.9706 37 1 0.8772 -7.2042 0.1790 38 1 2.2009 -7.6330 -0.9331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:42 Heat of formation + Delta-G solvation = -275.894830 kcal Electronic energy + Delta-G solvation = -29252.880794 eV Core-core repulsion = 24487.281006 eV Total energy + Delta-G solvation = -4765.599788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.76106 -46.31750 -46.21198 -40.89094 -39.84590 -37.40069 -36.38107 -34.95178 -33.31901 -32.51991 -31.16801 -28.27679 -26.35472 -24.46489 -23.54103 -22.85463 -21.68918 -20.58240 -19.44620 -18.53515 -18.31438 -17.47175 -17.23474 -17.01968 -16.83529 -16.32384 -15.89950 -15.52265 -14.99380 -14.40909 -14.27572 -13.96741 -13.79656 -13.62685 -13.31039 -13.22605 -13.06399 -12.88405 -12.74774 -12.55347 -12.51432 -12.44608 -12.40675 -11.97505 -11.84201 -11.50979 -11.32979 -11.08285 -11.06343 -10.87063 -10.77255 -10.67344 -10.21499 -9.66661 -9.54640 -8.68918 -8.44113 -8.28832 -6.79343 -4.50689 1.90737 2.69948 2.89705 3.30214 3.37620 3.54616 3.57922 4.10668 4.25921 4.30656 4.32263 4.43725 4.63324 4.86597 4.87987 5.07086 5.08352 5.18475 5.34698 5.42429 5.46899 5.56835 5.59141 5.61273 5.71592 5.80578 5.88901 6.05261 6.20722 6.51019 6.66491 7.02328 7.15339 7.46780 7.59196 8.09013 8.36798 8.45887 9.01438 9.18048 10.55602 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.003588 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.769210 B = 7802.222523 C = 7970.252302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.052 3.948 3 Si 1.060 2.940 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.649 4.649 8 H 0.073 0.927 9 C 0.252 3.748 10 H 0.080 0.920 11 N -0.720 5.720 12 C 0.703 3.297 13 O -0.582 6.582 14 N -0.636 5.636 15 C 0.114 3.886 16 C -0.126 4.126 17 C -0.077 4.077 18 C 0.483 3.517 19 O -0.513 6.513 20 O -0.516 6.516 21 C -0.120 4.120 22 C 0.132 3.868 23 C 0.413 3.587 24 F -0.176 7.176 25 F -0.206 7.206 26 F -0.199 7.199 27 H 0.278 0.722 28 H 0.396 0.604 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.409 0.591 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.884 -14.137 0.017 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.162 4.162 3 Si 0.886 3.114 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.684 4.684 8 H 0.091 0.909 9 C 0.145 3.855 10 H 0.098 0.902 11 N -0.374 5.374 12 C 0.405 3.595 13 O -0.459 6.459 14 N -0.376 5.376 15 C -0.010 4.010 16 C -0.165 4.165 17 C -0.096 4.096 18 C 0.325 3.675 19 O -0.401 6.401 20 O -0.328 6.328 21 C -0.159 4.159 22 C 0.009 3.991 23 C 0.357 3.643 24 F -0.157 7.157 25 F -0.188 7.188 26 F -0.180 7.180 27 H 0.089 0.911 28 H 0.232 0.768 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.267 0.733 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.368 -12.493 0.090 16.235 hybrid contribution 1.015 -2.091 0.808 2.461 sum 11.384 -14.584 0.898 18.523 Atomic orbital electron populations 1.70748 1.07623 1.31844 1.37202 1.25918 0.95675 1.02815 0.91772 0.83704 0.75516 0.75108 0.77101 1.20370 1.20674 1.20970 1.21553 1.05795 0.93393 1.47639 0.90933 1.19567 0.95232 0.85512 0.85198 0.90238 1.45252 1.12093 1.04252 1.75812 1.15986 0.85179 0.80733 0.77604 1.90901 1.12696 1.84843 1.57497 1.47283 1.05401 1.06133 1.78752 1.21679 0.80487 1.00327 0.98540 1.22017 1.01614 0.92047 1.00794 1.21077 0.96756 0.94290 0.97482 1.23595 0.79950 0.80539 0.83448 1.90735 1.61740 1.44515 1.43085 1.84540 1.24637 1.64642 1.59006 1.21898 0.91477 1.00995 1.01495 1.21393 1.00540 0.80038 0.97141 1.23108 0.72696 0.72993 0.95502 1.93153 1.75806 1.51222 1.95560 1.93096 1.82483 1.54320 1.88915 1.93009 1.42831 1.95615 1.86582 0.91075 0.76757 0.90877 0.89401 0.90596 0.89240 0.87024 0.73265 0.90308 0.89802 0.88066 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.66 12.32 55.43 0.68 -22.98 16 2 C 0.05 1.37 4.25 -17.82 -0.08 1.29 16 3 Si 1.06 23.16 29.98 -169.99 -5.10 18.06 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.65 -16.42 8.32 -34.44 -0.29 -16.71 16 8 H 0.07 1.76 7.86 -52.48 -0.41 1.35 16 9 C 0.25 6.15 2.01 -69.08 -0.14 6.01 16 10 H 0.08 2.17 6.39 -51.93 -0.33 1.84 16 11 N -0.72 -14.53 4.80 -59.81 -0.29 -14.82 16 12 C 0.70 13.83 7.81 -86.92 -0.68 13.16 16 13 O -0.58 -13.72 14.58 5.29 0.08 -13.64 16 14 N -0.64 -9.12 2.97 -178.24 -0.53 -9.65 16 15 C 0.11 1.18 6.37 -3.49 -0.02 1.16 16 16 C -0.13 -1.15 5.31 -26.39 -0.14 -1.29 16 17 C -0.08 -0.68 2.59 -91.73 -0.24 -0.91 16 18 C 0.48 4.71 7.63 36.01 0.27 4.98 16 19 O -0.51 -6.74 16.74 -18.75 -0.31 -7.05 16 20 O -0.52 -3.68 13.30 -39.26 -0.52 -4.20 16 21 C -0.12 -1.28 4.65 -26.61 -0.12 -1.40 16 22 C 0.13 1.59 6.44 -3.71 -0.02 1.57 16 23 C 0.41 10.27 2.82 37.16 0.10 10.37 16 24 F -0.18 -4.69 14.69 2.25 0.03 -4.66 16 25 F -0.21 -5.13 15.99 2.25 0.04 -5.09 16 26 F -0.20 -4.68 16.97 2.25 0.04 -4.64 16 27 H 0.28 7.91 7.23 -40.82 -0.30 7.62 16 28 H 0.40 6.89 6.12 -40.82 -0.25 6.64 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.95 5.74 -51.93 -0.30 0.65 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.41 1.32 9.10 45.56 0.41 1.74 16 35 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 36 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.10 1.45 6.99 -51.93 -0.36 1.08 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 328.15 15.07 4.95 4.95 Total: -1.00 -33.42 328.15 -5.57 -38.99 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.28 Total: 6.50 kcal Atomic # 6 Polarization: 19.58 SS G_CDS: -1.35 Total: 18.24 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.13 Total: -47.45 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.76 Total: -24.89 kcal Atomic # 9 Polarization: -14.50 SS G_CDS: 0.11 Total: -14.39 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.10 Total: 18.06 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.42 -5.57 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.905 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds