Wall clock time and date at job start Tue Mar 31 2020 13:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99643 * 2 1 4 4 H 1.48497 * 109.47170 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47106 * 120.00281 * 3 2 1 6 6 H 1.48503 * 109.46721 * 239.99766 * 3 2 1 7 7 C 1.37874 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99927 * 152.69593 * 7 2 1 9 9 C 1.50700 * 120.00359 * 332.69452 * 7 2 1 10 10 H 1.08998 * 109.47124 * 54.13931 * 9 7 2 11 11 N 1.46495 * 109.47448 * 174.14255 * 9 7 2 12 12 C 1.34772 * 120.00187 * 205.00142 * 11 9 7 13 13 O 1.21587 * 120.00251 * 5.34216 * 12 11 9 14 14 N 1.34780 * 120.00368 * 185.34121 * 12 11 9 15 15 C 1.46929 * 120.62741 * 5.08674 * 14 12 11 16 16 C 1.53618 * 108.54741 * 126.36611 * 15 14 12 17 17 C 1.53044 * 109.23693 * 54.85487 * 16 15 14 18 18 C 1.50710 * 109.45634 * 178.49267 * 17 16 15 19 19 O 1.20829 * 119.99972 * 120.06858 * 18 17 16 20 20 O 1.34230 * 119.99924 * 300.06517 * 18 17 16 21 21 C 1.53036 * 109.53936 * 298.50781 * 17 16 15 22 22 C 1.46922 * 120.63299 * 185.36412 * 14 12 11 23 23 C 1.53006 * 109.47088 * 294.14419 * 9 7 2 24 24 F 1.39903 * 109.47018 * 56.93733 * 23 9 7 25 25 F 1.39897 * 109.47118 * 176.93911 * 23 9 7 26 26 F 1.39900 * 109.46610 * 296.93946 * 23 9 7 27 27 H 0.97004 * 119.99701 * 174.49156 * 1 2 3 28 28 H 0.97000 * 120.00179 * 24.99811 * 11 9 7 29 29 H 1.08998 * 109.58390 * 246.20341 * 15 14 12 30 30 H 1.09002 * 109.58817 * 6.62344 * 15 14 12 31 31 H 1.08997 * 109.63668 * 294.86370 * 16 15 14 32 32 H 1.09000 * 109.46128 * 174.73509 * 16 15 14 33 33 H 1.08997 * 109.45455 * 58.52695 * 17 16 15 34 34 H 0.96694 * 116.99673 * 180.02562 * 20 18 17 35 35 H 1.09001 * 109.50275 * 301.41851 * 21 17 16 36 36 H 1.09003 * 109.52598 * 181.33366 * 21 17 16 37 37 H 1.08993 * 109.58555 * 353.37061 * 22 14 12 38 38 H 1.08996 * 109.58604 * 113.65862 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6965 1.2124 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 2.9944 -1.2463 -0.4285 9 6 1.3771 -2.4262 0.5998 10 1 0.4026 -2.5968 0.1422 11 7 2.2413 -3.5832 0.3539 12 6 1.7150 -4.8236 0.3252 13 8 0.5113 -4.9753 0.4062 14 7 2.5228 -5.8959 0.2068 15 6 3.9835 -5.7378 0.2196 16 6 4.5659 -6.6650 1.2971 17 6 4.0912 -8.0971 1.0403 18 6 4.6897 -9.0171 2.0731 19 8 3.9693 -9.6531 2.8056 20 8 6.0230 -9.1301 2.1792 21 6 2.5646 -8.1542 1.1302 22 6 1.9595 -7.2445 0.0563 23 6 1.2051 -2.2293 2.1073 24 9 0.4374 -1.0838 2.3434 25 9 0.5594 -3.3441 2.6526 26 9 2.4615 -2.0797 2.7043 27 1 -0.4850 -0.8362 -0.0806 28 1 3.1925 -3.4566 0.2116 29 1 4.3887 -6.0069 -0.7559 30 1 4.2370 -4.7031 0.4500 31 1 4.2277 -6.3406 2.2812 32 1 5.6546 -6.6298 1.2567 33 1 4.4085 -8.4119 0.0462 34 1 6.3600 -9.7328 2.8561 35 1 2.2452 -7.8158 2.1158 36 1 2.2283 -9.1788 0.9706 37 1 0.8772 -7.2042 0.1790 38 1 2.2009 -7.6330 -0.9331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:41 Heat of formation + Delta-G solvation = -299.780467 kcal Electronic energy + Delta-G solvation = -29253.916553 eV Core-core repulsion = 24487.281006 eV Total energy + Delta-G solvation = -4766.635547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.79136 -48.33215 -48.26564 -41.80236 -41.06421 -38.53455 -37.11325 -36.75069 -34.83572 -33.91918 -32.14813 -30.00878 -27.40177 -26.48963 -24.55284 -23.95276 -23.24802 -21.67172 -20.81963 -19.95957 -19.28636 -19.12016 -19.03195 -18.99415 -18.06741 -17.65199 -16.99452 -16.72178 -16.27208 -15.79447 -15.57200 -15.41380 -15.24356 -15.08219 -14.82736 -14.76068 -14.59798 -14.52350 -14.48768 -14.48332 -14.24702 -14.13693 -13.47268 -13.21012 -12.97519 -12.92395 -12.56743 -12.50485 -12.33325 -11.92134 -11.90137 -11.73207 -11.53385 -11.45205 -11.21731 -10.45442 -10.29104 -9.58698 -8.85939 -6.57098 1.17328 1.51100 1.59803 1.64271 1.85596 1.94855 2.11250 2.26558 2.51838 2.85534 2.90203 3.43667 3.51282 3.59001 3.61466 3.74331 3.90910 4.00400 4.25810 4.30618 4.40376 4.53036 4.63062 4.68583 4.76520 4.81394 4.95691 5.03006 5.20857 5.32932 5.34271 5.57341 5.61771 5.89667 6.07102 6.30175 6.94967 6.98399 7.17345 7.52753 8.47587 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.003588 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.769210 B = 7802.222523 C = 7970.252302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.008 3.992 3 Si 1.104 2.896 4 H -0.286 1.286 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.650 4.650 8 H 0.086 0.914 9 C 0.258 3.742 10 H 0.043 0.957 11 N -0.714 5.714 12 C 0.696 3.304 13 O -0.631 6.631 14 N -0.628 5.628 15 C 0.106 3.894 16 C -0.118 4.118 17 C -0.073 4.073 18 C 0.489 3.511 19 O -0.555 6.555 20 O -0.507 6.507 21 C -0.112 4.112 22 C 0.130 3.870 23 C 0.413 3.587 24 F -0.188 7.188 25 F -0.209 7.209 26 F -0.189 7.189 27 H 0.262 0.738 28 H 0.411 0.589 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.120 0.880 33 H 0.149 0.851 34 H 0.427 0.573 35 H 0.045 0.955 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.316 -14.812 -0.973 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.200 4.200 3 Si 0.924 3.076 4 H -0.212 1.212 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.686 4.686 8 H 0.104 0.896 9 C 0.150 3.850 10 H 0.061 0.939 11 N -0.370 5.370 12 C 0.397 3.603 13 O -0.512 6.512 14 N -0.365 5.365 15 C -0.016 4.016 16 C -0.157 4.157 17 C -0.092 4.092 18 C 0.333 3.667 19 O -0.446 6.446 20 O -0.320 6.320 21 C -0.151 4.151 22 C 0.008 3.992 23 C 0.357 3.643 24 F -0.170 7.170 25 F -0.191 7.191 26 F -0.170 7.170 27 H 0.072 0.928 28 H 0.250 0.750 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.138 0.862 33 H 0.166 0.834 34 H 0.288 0.712 35 H 0.064 0.936 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.904 -13.229 -0.910 19.214 hybrid contribution 0.012 -2.008 1.142 2.310 sum 13.916 -15.237 0.232 20.637 Atomic orbital electron populations 1.70870 1.08755 1.30812 1.39919 1.27303 0.95640 1.06330 0.90706 0.83149 0.74699 0.71141 0.78589 1.21182 1.19592 1.18034 1.21823 1.06076 0.93502 1.47153 0.89551 1.19157 0.94360 0.86958 0.84574 0.93884 1.44993 1.12310 1.03606 1.76128 1.16220 0.85065 0.81515 0.77475 1.90867 1.15131 1.85600 1.59556 1.47380 1.06881 1.05333 1.76931 1.22048 0.77707 1.00744 1.01068 1.21966 1.03212 0.91618 0.98871 1.21081 0.94939 0.94039 0.99133 1.23667 0.80445 0.79805 0.82741 1.90736 1.62824 1.46350 1.44667 1.84488 1.22991 1.64922 1.59582 1.21765 0.93331 1.00948 0.99045 1.21568 0.99012 0.79122 0.99529 1.23132 0.72802 0.72511 0.95845 1.93125 1.76266 1.51948 1.95666 1.93089 1.82628 1.54382 1.88956 1.93016 1.42014 1.95547 1.86442 0.92849 0.75014 0.87073 0.89795 0.93106 0.86213 0.83396 0.71162 0.93628 0.88608 0.91087 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.00 12.32 21.45 0.26 -49.73 16 2 C 0.01 0.43 4.25 84.65 0.36 0.79 16 3 Si 1.10 45.51 29.98 68.60 2.06 47.56 16 4 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.65 -32.67 8.32 25.60 0.21 -32.45 16 8 H 0.09 4.03 7.86 -2.91 -0.02 4.01 16 9 C 0.26 12.84 2.01 44.25 0.09 12.92 16 10 H 0.04 2.48 6.39 -2.39 -0.02 2.47 16 11 N -0.71 -28.73 4.80 -461.42 -2.22 -30.95 16 12 C 0.70 27.60 7.81 179.05 1.40 29.00 16 13 O -0.63 -30.97 14.58 -3.99 -0.06 -31.03 16 14 N -0.63 -17.19 2.97 -836.08 -2.48 -19.67 16 15 C 0.11 1.87 6.37 86.51 0.55 2.42 16 16 C -0.12 -1.77 5.31 30.82 0.16 -1.61 16 17 C -0.07 -1.05 2.59 -11.51 -0.03 -1.08 16 18 C 0.49 8.31 7.63 71.24 0.54 8.85 16 19 O -0.55 -13.97 16.74 21.96 0.37 -13.60 16 20 O -0.51 -5.44 13.30 -51.42 -0.68 -6.12 16 21 C -0.11 -2.25 4.65 30.67 0.14 -2.11 16 22 C 0.13 2.98 6.44 86.37 0.56 3.54 16 23 C 0.41 20.86 2.82 71.98 0.20 21.06 16 24 F -0.19 -10.27 14.69 44.97 0.66 -9.61 16 25 F -0.21 -10.67 15.99 44.97 0.72 -9.96 16 26 F -0.19 -8.78 16.97 44.97 0.76 -8.02 16 27 H 0.26 15.57 7.23 -92.71 -0.67 14.90 16 28 H 0.41 13.70 6.12 -92.71 -0.57 13.13 16 29 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.57 5.74 -2.39 -0.01 1.56 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.12 1.14 8.08 -2.39 -0.02 1.12 16 33 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.43 1.45 9.10 -74.06 -0.67 0.77 16 35 H 0.04 1.22 8.13 -2.39 -0.02 1.20 16 36 H 0.10 1.70 8.07 -2.39 -0.02 1.68 16 37 H 0.07 2.09 6.99 -2.39 -0.02 2.07 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -75.49 328.15 3.59 -71.90 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.00 Total: 17.88 kcal Atomic # 6 Polarization: 37.16 SS G_CDS: 4.19 Total: 41.35 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -4.43 Total: -100.36 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -0.37 Total: -50.75 kcal Atomic # 9 Polarization: -29.72 SS G_CDS: 2.14 Total: -27.58 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.06 Total: 47.56 kcal Total: -75.49 3.59 -71.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.882 kcal (2) G-P(sol) polarization free energy of solvation -75.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -303.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -299.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds