Wall clock time and date at job start Tue Mar 31 2020 13:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.27486 * 124.87218 * 2 1 4 4 N 1.38792 * 116.83418 * 180.20568 * 3 2 1 5 5 C 1.35156 * 113.43855 * 359.56689 * 4 3 2 6 6 N 1.32314 * 108.84983 * 180.23567 * 5 4 3 7 7 C 1.33830 * 109.09568 * 0.02562 * 6 5 4 8 8 C 1.50696 * 125.82422 * 179.97438 * 7 6 5 9 9 C 1.34469 * 108.34977 * 359.97438 * 7 6 5 10 10 C 1.50704 * 126.42554 * 179.97438 * 9 7 6 11 11 N 1.46498 * 109.46934 * 270.03893 * 10 9 7 12 12 C 1.36938 * 119.99928 * 89.99772 * 11 10 9 13 13 H 1.07991 * 120.00184 * 219.63621 * 12 11 10 14 14 C 1.38814 * 119.99893 * 39.64213 * 12 11 10 15 15 N 1.31624 * 119.99995 * 18.14656 * 14 12 11 16 16 Si 1.86794 * 120.00180 * 198.15164 * 14 12 11 17 17 H 1.48504 * 109.47053 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47310 * 119.99518 * 16 14 12 19 19 H 1.48495 * 109.47545 * 239.99789 * 16 14 12 20 20 C 1.46500 * 120.00168 * 269.99944 * 11 10 9 21 21 C 1.52995 * 109.47158 * 95.73544 * 20 11 10 22 22 C 1.50705 * 109.47107 * 180.02562 * 21 20 11 23 23 O 1.20820 * 119.99770 * 359.97438 * 22 21 20 24 24 O 1.34230 * 119.99831 * 179.97438 * 22 21 20 25 25 S 1.75781 * 124.86446 * 179.76258 * 2 1 3 26 26 H 1.08995 * 109.47662 * 180.26215 * 1 2 3 27 27 H 1.09006 * 109.47004 * 300.26622 * 1 2 3 28 28 H 1.09001 * 109.47057 * 60.25758 * 1 2 3 29 29 H 1.09001 * 109.47124 * 90.02484 * 8 7 6 30 30 H 1.09005 * 109.46773 * 210.02311 * 8 7 6 31 31 H 1.09000 * 109.47553 * 330.02303 * 8 7 6 32 32 H 1.08992 * 109.46736 * 30.03950 * 10 9 7 33 33 H 1.08998 * 109.47251 * 150.03756 * 10 9 7 34 34 H 0.97002 * 119.99996 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.47185 * 215.73574 * 20 11 10 36 36 H 1.09004 * 109.46727 * 335.73494 * 20 11 10 37 37 H 1.09009 * 109.46897 * 299.99460 * 21 20 11 38 38 H 1.08999 * 109.47609 * 59.99630 * 21 20 11 39 39 H 0.96701 * 116.99722 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2358 1.0459 0.0000 4 7 3.6101 0.8519 -0.0044 5 6 3.9691 -0.4511 0.0012 6 7 5.2898 -0.5307 0.0015 7 6 5.8029 0.7053 -0.0033 8 6 7.2696 1.0515 -0.0041 9 6 4.7864 1.5856 -0.0073 10 6 4.9038 3.0881 -0.0128 11 7 4.9418 3.5799 1.3666 12 6 6.1419 3.7174 2.0116 13 1 6.2285 3.4490 3.0541 14 6 7.2472 4.2018 1.3256 15 7 7.0853 4.8554 0.1946 16 14 8.9643 3.9259 2.0072 17 1 8.8751 3.1697 3.2822 18 1 9.7675 3.1515 1.0271 19 1 9.6154 5.2373 2.2546 20 6 3.6960 3.9247 2.0559 21 6 3.2320 2.7338 2.8968 22 6 1.9500 3.0882 3.6055 23 8 1.4584 4.1814 3.4538 24 8 1.3545 2.1894 4.4050 25 16 2.5118 -1.4423 0.0060 26 1 -0.3634 -1.0276 0.0047 27 1 -0.3633 0.5180 0.8876 28 1 -0.3633 0.5098 -0.8923 29 1 7.6235 1.1312 -1.0320 30 1 7.4185 2.0031 0.5063 31 1 7.8275 0.2707 0.5127 32 1 5.8194 3.3790 -0.5277 33 1 4.0449 3.5177 -0.5283 34 1 7.8576 5.1942 -0.2846 35 1 3.8657 4.7837 2.7051 36 1 2.9300 4.1708 1.3205 37 1 3.0622 1.8748 2.2475 38 1 3.9980 2.4876 3.6321 39 1 0.5344 2.4627 4.8383 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600789639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:47 Heat of formation + Delta-G solvation = 50.335378 kcal Electronic energy + Delta-G solvation = -26274.127897 eV Core-core repulsion = 22539.576875 eV Total energy + Delta-G solvation = -3734.551022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.02854 -39.92229 -37.77918 -36.30396 -35.71503 -32.67887 -32.17544 -31.23581 -29.75249 -29.13525 -26.74979 -25.11695 -24.81475 -23.25462 -21.83735 -20.24100 -19.93954 -19.68016 -18.26722 -17.84528 -16.89010 -16.15713 -16.02567 -15.68623 -15.64276 -14.82234 -14.36698 -14.15776 -13.83188 -13.68182 -13.46595 -13.03529 -12.91343 -12.75391 -12.56820 -12.44726 -12.10034 -11.87346 -11.52240 -11.45907 -11.32136 -11.17296 -10.89125 -10.69564 -10.55519 -10.41839 -10.31704 -10.25019 -10.12157 -9.86831 -9.55616 -8.68759 -8.63248 -7.45805 -6.83615 -6.01330 -3.61862 0.70568 1.03535 1.40922 2.14921 2.36081 2.51106 3.22669 3.30350 3.36478 3.37494 3.40814 4.25478 4.34301 4.66741 4.99807 5.10717 5.14437 5.36358 5.40614 5.51117 5.54073 5.64136 5.79163 5.91231 6.05398 6.13258 6.24862 6.35041 6.43414 6.55655 6.67062 6.74238 6.79805 6.91246 7.16546 7.32000 7.66176 7.70156 8.14226 8.16584 8.33092 8.95017 9.53752 10.13968 11.01518 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.006161 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.214639 B = 4543.861608 C = 6287.226052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.081 3.919 3 N -0.234 5.234 4 N -0.308 5.308 5 C 0.076 3.924 6 N -0.435 5.435 7 C 0.037 3.963 8 C -0.073 4.073 9 C 0.050 3.950 10 C 0.207 3.793 11 N -0.566 5.566 12 C -0.266 4.266 13 H 0.063 0.937 14 C 0.023 3.977 15 N -0.882 5.882 16 Si 0.889 3.111 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.287 1.287 20 C 0.163 3.837 21 C -0.133 4.133 22 C 0.481 3.519 23 O -0.519 6.519 24 O -0.525 6.525 25 S 0.133 5.867 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.042 0.958 34 H 0.260 0.740 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.917 -9.831 -0.020 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.218 4.218 3 N -0.046 5.046 4 N -0.087 5.087 5 C -0.290 4.290 6 N -0.160 5.160 7 C -0.094 4.094 8 C -0.131 4.131 9 C -0.066 4.066 10 C 0.079 3.921 11 N -0.284 5.284 12 C -0.395 4.395 13 H 0.081 0.919 14 C -0.178 4.178 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.213 1.213 20 C 0.036 3.964 21 C -0.174 4.174 22 C 0.324 3.676 23 O -0.407 6.407 24 O -0.336 6.336 25 S 0.367 5.633 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -11.368 -10.408 -0.367 15.417 hybrid contribution 0.260 0.996 0.708 1.249 sum -11.108 -9.412 0.341 14.564 Atomic orbital electron populations 1.20493 0.82309 1.04686 1.05429 1.28260 1.02019 0.91471 1.00088 1.73512 0.87955 1.25052 1.18092 1.47860 1.01243 1.06422 1.53176 1.26107 0.98163 0.87171 1.17584 1.70352 1.01394 1.25083 1.19198 1.20506 0.96397 0.86332 1.06211 1.20315 0.86848 1.03749 1.02196 1.23488 0.78340 0.98647 1.06169 1.19802 1.03649 0.80369 0.88254 1.43751 1.01576 1.71808 1.11240 1.19054 0.86351 1.38189 0.95938 0.91902 1.25210 0.99084 0.95961 0.97587 1.69918 1.29827 1.35301 1.17253 0.86488 0.84467 0.78051 0.79302 1.19662 1.20453 1.21327 1.20680 0.88761 0.92284 0.94686 1.22307 0.90402 1.04586 1.00063 1.24054 0.86182 0.81768 0.75603 1.90673 1.65018 1.23651 1.61339 1.84633 1.42084 1.47863 1.59056 1.84947 0.90030 1.04440 1.83859 0.88904 0.88466 0.88374 0.91877 0.87869 0.91818 0.85392 0.93932 0.92944 0.92066 0.93357 0.89357 0.88282 0.74296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.49 36.00 0.38 -0.11 16 2 C 0.08 1.03 7.58 -14.08 -0.11 0.93 16 3 N -0.23 -3.97 11.22 32.88 0.37 -3.61 16 4 N -0.31 -6.10 3.68 -8.73 -0.03 -6.14 16 5 C 0.08 1.48 9.00 -88.74 -0.80 0.68 16 6 N -0.44 -9.27 11.32 -9.76 -0.11 -9.38 16 7 C 0.04 0.81 7.06 -83.06 -0.59 0.22 16 8 C -0.07 -1.47 10.03 36.00 0.36 -1.11 16 9 C 0.05 1.09 6.69 -80.84 -0.54 0.55 16 10 C 0.21 4.74 5.46 -5.19 -0.03 4.71 16 11 N -0.57 -13.33 2.41 -174.62 -0.42 -13.75 16 12 C -0.27 -6.67 8.90 -15.06 -0.13 -6.81 16 13 H 0.06 1.60 7.89 -52.49 -0.41 1.19 16 14 C 0.02 0.57 3.46 -17.43 -0.06 0.51 16 15 N -0.88 -22.96 11.41 55.49 0.63 -22.33 16 16 Si 0.89 19.84 28.38 -169.99 -4.82 15.02 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.16 3.51 5.01 -4.04 -0.02 3.49 16 21 C -0.13 -2.53 6.10 -27.88 -0.17 -2.70 16 22 C 0.48 8.24 8.33 36.01 0.30 8.54 16 23 O -0.52 -10.02 16.74 -18.75 -0.31 -10.33 16 24 O -0.52 -7.10 13.42 -39.26 -0.53 -7.62 16 25 S 0.13 1.80 23.35 -107.50 -2.51 -0.71 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 2.27 3.75 -51.93 -0.19 2.08 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.13 3.16 5.16 -51.93 -0.27 2.89 16 33 H 0.04 0.97 7.86 -51.93 -0.41 0.56 16 34 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 35 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16 36 H 0.05 1.05 7.79 -51.93 -0.40 0.64 16 37 H 0.09 1.75 6.41 -51.92 -0.33 1.42 16 38 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 39 H 0.40 3.39 9.10 45.56 0.41 3.80 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -31.48 344.53 -7.65 -39.13 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.70 Total: 5.65 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -1.41 Total: 8.88 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.44 Total: -55.20 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.84 Total: -17.95 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.82 Total: 15.02 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.51 Total: -0.71 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.48 -7.65 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600789639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.461 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds