Wall clock time and date at job start Tue Mar 31 2020 13:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.27486 * 124.87218 * 2 1 4 4 N 1.38792 * 116.83418 * 180.20568 * 3 2 1 5 5 C 1.35156 * 113.43855 * 359.56689 * 4 3 2 6 6 N 1.32314 * 108.84983 * 180.23567 * 5 4 3 7 7 C 1.33830 * 109.09568 * 0.02562 * 6 5 4 8 8 C 1.50696 * 125.82422 * 179.97438 * 7 6 5 9 9 C 1.34469 * 108.34977 * 359.97438 * 7 6 5 10 10 C 1.50704 * 126.42554 * 179.97438 * 9 7 6 11 11 N 1.46498 * 109.46934 * 270.03893 * 10 9 7 12 12 C 1.36938 * 119.99928 * 89.99772 * 11 10 9 13 13 H 1.07991 * 120.00184 * 219.63621 * 12 11 10 14 14 C 1.38814 * 119.99893 * 39.64213 * 12 11 10 15 15 N 1.31624 * 119.99995 * 18.14656 * 14 12 11 16 16 Si 1.86794 * 120.00180 * 198.15164 * 14 12 11 17 17 H 1.48504 * 109.47053 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47310 * 119.99518 * 16 14 12 19 19 H 1.48495 * 109.47545 * 239.99789 * 16 14 12 20 20 C 1.46500 * 120.00168 * 269.99944 * 11 10 9 21 21 C 1.52995 * 109.47158 * 95.73544 * 20 11 10 22 22 C 1.50705 * 109.47107 * 180.02562 * 21 20 11 23 23 O 1.20820 * 119.99770 * 359.97438 * 22 21 20 24 24 O 1.34230 * 119.99831 * 179.97438 * 22 21 20 25 25 S 1.75781 * 124.86446 * 179.76258 * 2 1 3 26 26 H 1.08995 * 109.47662 * 180.26215 * 1 2 3 27 27 H 1.09006 * 109.47004 * 300.26622 * 1 2 3 28 28 H 1.09001 * 109.47057 * 60.25758 * 1 2 3 29 29 H 1.09001 * 109.47124 * 90.02484 * 8 7 6 30 30 H 1.09005 * 109.46773 * 210.02311 * 8 7 6 31 31 H 1.09000 * 109.47553 * 330.02303 * 8 7 6 32 32 H 1.08992 * 109.46736 * 30.03950 * 10 9 7 33 33 H 1.08998 * 109.47251 * 150.03756 * 10 9 7 34 34 H 0.97002 * 119.99996 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.47185 * 215.73574 * 20 11 10 36 36 H 1.09004 * 109.46727 * 335.73494 * 20 11 10 37 37 H 1.09009 * 109.46897 * 299.99460 * 21 20 11 38 38 H 1.08999 * 109.47609 * 59.99630 * 21 20 11 39 39 H 0.96701 * 116.99722 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2358 1.0459 0.0000 4 7 3.6101 0.8519 -0.0044 5 6 3.9691 -0.4511 0.0012 6 7 5.2898 -0.5307 0.0015 7 6 5.8029 0.7053 -0.0033 8 6 7.2696 1.0515 -0.0041 9 6 4.7864 1.5856 -0.0073 10 6 4.9038 3.0881 -0.0128 11 7 4.9418 3.5799 1.3666 12 6 6.1419 3.7174 2.0116 13 1 6.2285 3.4490 3.0541 14 6 7.2472 4.2018 1.3256 15 7 7.0853 4.8554 0.1946 16 14 8.9643 3.9259 2.0072 17 1 8.8751 3.1697 3.2822 18 1 9.7675 3.1515 1.0271 19 1 9.6154 5.2373 2.2546 20 6 3.6960 3.9247 2.0559 21 6 3.2320 2.7338 2.8968 22 6 1.9500 3.0882 3.6055 23 8 1.4584 4.1814 3.4538 24 8 1.3545 2.1894 4.4050 25 16 2.5118 -1.4423 0.0060 26 1 -0.3634 -1.0276 0.0047 27 1 -0.3633 0.5180 0.8876 28 1 -0.3633 0.5098 -0.8923 29 1 7.6235 1.1312 -1.0320 30 1 7.4185 2.0031 0.5063 31 1 7.8275 0.2707 0.5127 32 1 5.8194 3.3790 -0.5277 33 1 4.0449 3.5177 -0.5283 34 1 7.8576 5.1942 -0.2846 35 1 3.8657 4.7837 2.7051 36 1 2.9300 4.1708 1.3205 37 1 3.0622 1.8748 2.2475 38 1 3.9980 2.4876 3.6321 39 1 0.5344 2.4627 4.8383 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600789639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:46 Heat of formation + Delta-G solvation = 29.810169 kcal Electronic energy + Delta-G solvation = -26275.017937 eV Core-core repulsion = 22539.576875 eV Total energy + Delta-G solvation = -3735.441062 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.47465 -41.28612 -39.07205 -37.93820 -37.10282 -34.17172 -33.67383 -32.88726 -31.27905 -30.39168 -28.29058 -26.82769 -26.39012 -24.52061 -23.44323 -21.76614 -21.38730 -20.99575 -19.71271 -19.20518 -18.59569 -17.62398 -17.45069 -17.11532 -17.00141 -16.60772 -15.56338 -15.40721 -15.32059 -15.31178 -14.90808 -14.40191 -14.24019 -14.03266 -13.90068 -13.73641 -13.51880 -13.34587 -13.10237 -12.96989 -12.69742 -12.65178 -12.59509 -12.41805 -12.29222 -12.08696 -11.87587 -11.71710 -11.60544 -11.29132 -11.07938 -10.56255 -10.05358 -8.88286 -8.70076 -7.91885 -5.56579 -0.50153 -0.12902 0.17434 0.86708 0.95500 1.12962 1.46305 1.52607 1.59964 1.73327 2.07207 2.50161 3.01031 3.24757 3.68162 3.69448 3.89834 3.97351 4.02262 4.18786 4.34965 4.45249 4.48268 4.60782 4.65676 4.72150 4.79861 4.85594 4.91195 5.04298 5.10361 5.15848 5.17521 5.46637 5.52929 5.62178 5.67592 6.34301 6.41184 6.67313 6.95660 7.06172 7.66309 8.25715 9.09692 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.006161 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.214639 B = 4543.861608 C = 6287.226052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.103 3.897 3 N -0.278 5.278 4 N -0.314 5.314 5 C 0.061 3.939 6 N -0.465 5.465 7 C 0.026 3.974 8 C -0.071 4.071 9 C 0.027 3.973 10 C 0.223 3.777 11 N -0.578 5.578 12 C -0.274 4.274 13 H 0.054 0.946 14 C -0.005 4.005 15 N -0.908 5.908 16 Si 0.937 3.063 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.291 1.291 20 C 0.170 3.830 21 C -0.122 4.122 22 C 0.496 3.504 23 O -0.543 6.543 24 O -0.511 6.511 25 S 0.202 5.798 26 H 0.129 0.871 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.031 0.969 34 H 0.260 0.740 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.292 -12.063 0.567 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.195 4.195 3 N -0.091 5.091 4 N -0.090 5.090 5 C -0.307 4.307 6 N -0.191 5.191 7 C -0.106 4.106 8 C -0.128 4.128 9 C -0.091 4.091 10 C 0.095 3.905 11 N -0.296 5.296 12 C -0.403 4.403 13 H 0.072 0.928 14 C -0.204 4.204 15 N -0.550 5.550 16 Si 0.764 3.236 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.218 1.218 20 C 0.043 3.957 21 C -0.162 4.162 22 C 0.339 3.661 23 O -0.433 6.433 24 O -0.324 6.324 25 S 0.437 5.563 26 H 0.148 0.852 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -13.788 -12.670 0.241 18.727 hybrid contribution 0.711 1.529 0.534 1.768 sum -13.077 -11.141 0.775 17.197 Atomic orbital electron populations 1.20951 0.77917 1.07540 1.06777 1.29431 1.03966 0.90470 0.95672 1.73693 0.86425 1.26816 1.22210 1.47873 1.02340 1.06234 1.52601 1.27217 0.99197 0.88676 1.15567 1.70321 1.02718 1.24777 1.21265 1.20689 0.96863 0.86849 1.06179 1.20268 0.86847 1.02974 1.02755 1.22971 0.79686 0.97915 1.08511 1.19386 1.01946 0.81602 0.87558 1.43831 1.01764 1.72580 1.11465 1.19108 0.87293 1.38125 0.95794 0.92809 1.25664 1.01383 0.95654 0.97721 1.70013 1.30422 1.36309 1.18246 0.85752 0.81348 0.77590 0.78940 1.19528 1.19539 1.21820 1.20540 0.87967 0.92870 0.94331 1.21934 0.91679 1.02941 0.99684 1.23392 0.85488 0.81547 0.75636 1.90679 1.65563 1.24696 1.62364 1.84537 1.43431 1.46371 1.58111 1.84759 0.86235 1.02812 1.82541 0.85234 0.87142 0.86589 0.90819 0.89811 0.90730 0.87515 0.95052 0.93059 0.93729 0.94092 0.89760 0.88852 0.71160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.49 71.23 0.75 0.07 16 2 C 0.10 2.29 7.58 88.74 0.67 2.96 16 3 N -0.28 -9.08 11.22 -49.04 -0.55 -9.63 16 4 N -0.31 -12.41 3.68 -181.54 -0.67 -13.08 16 5 C 0.06 2.28 9.00 179.69 1.62 3.90 16 6 N -0.46 -19.84 11.32 -184.80 -2.09 -21.93 16 7 C 0.03 1.15 7.06 41.39 0.29 1.44 16 8 C -0.07 -2.91 10.03 71.23 0.71 -2.20 16 9 C 0.03 1.20 6.69 40.62 0.27 1.47 16 10 C 0.22 10.68 5.46 85.63 0.47 11.14 16 11 N -0.58 -28.29 2.41 -706.36 -1.70 -29.99 16 12 C -0.27 -14.20 8.90 84.03 0.75 -13.45 16 13 H 0.05 2.84 7.89 -2.92 -0.02 2.81 16 14 C -0.01 -0.27 3.46 84.86 0.29 0.03 16 15 N -0.91 -48.86 11.41 21.65 0.25 -48.61 16 16 Si 0.94 41.47 28.38 68.60 1.95 43.42 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 C 0.17 7.53 5.01 86.38 0.43 7.97 16 21 C -0.12 -4.65 6.10 29.85 0.18 -4.47 16 22 C 0.50 16.30 8.33 71.24 0.59 16.90 16 23 O -0.54 -20.44 16.74 21.98 0.37 -20.07 16 24 O -0.51 -12.26 13.42 -51.42 -0.69 -12.95 16 25 S 0.20 4.82 23.35 -56.49 -1.32 3.51 16 26 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.08 3.80 3.75 -2.38 -0.01 3.79 16 31 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.11 5.56 5.16 -2.39 -0.01 5.55 16 33 H 0.03 1.51 7.86 -2.39 -0.02 1.49 16 34 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 35 H 0.04 2.08 8.04 -2.39 -0.02 2.07 16 36 H 0.04 1.84 7.79 -2.39 -0.02 1.82 16 37 H 0.08 3.33 6.41 -2.38 -0.02 3.31 16 38 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 39 H 0.43 5.62 9.10 -74.06 -0.67 4.94 16 Total: -1.00 -71.10 344.53 3.02 -68.08 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.44 Total: 15.48 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 7.03 Total: 25.76 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -4.76 Total: -123.23 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.32 Total: -33.02 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.95 Total: 43.42 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.32 Total: 3.51 kcal Total: -71.10 3.02 -68.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600789639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.895 kcal (2) G-P(sol) polarization free energy of solvation -71.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds