Wall clock time and date at job start Tue Mar 31 2020 13:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.34770 * 120.00393 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99788 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00528 * 179.97438 * 12 11 10 15 15 C 1.48149 * 127.83454 * 359.68711 * 14 12 11 16 16 C 1.54787 * 104.41724 * 140.36513 * 15 14 12 17 17 C 1.54285 * 104.91974 * 24.16478 * 16 15 14 18 18 C 1.50704 * 110.34088 * 240.93562 * 17 16 15 19 19 O 1.20828 * 120.00047 * 356.99120 * 18 17 16 20 20 O 1.34230 * 119.99889 * 176.99213 * 18 17 16 21 21 C 1.53001 * 110.43131 * 118.72626 * 17 16 15 22 22 F 1.39903 * 109.46709 * 302.95471 * 21 17 16 23 23 F 1.39898 * 109.46917 * 62.95565 * 21 17 16 24 24 F 1.39896 * 109.47228 * 182.95480 * 21 17 16 25 25 C 1.48137 * 127.84125 * 180.02562 * 14 12 11 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 0.97000 * 120.00040 * 359.97438 * 11 10 9 32 32 H 1.08996 * 110.40318 * 259.19963 * 15 14 12 33 33 H 1.09004 * 110.40672 * 21.62516 * 15 14 12 34 34 H 1.09001 * 110.52444 * 265.22009 * 16 15 14 35 35 H 1.09000 * 110.28720 * 142.98326 * 16 15 14 36 36 H 0.96699 * 117.00020 * 180.02562 * 20 18 17 37 37 H 1.09006 * 110.40975 * 338.37568 * 25 14 12 38 38 H 1.09001 * 110.40786 * 100.68740 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5126 -4.9308 -0.0168 12 6 2.1863 -6.0980 -0.0226 13 8 3.4023 -6.0980 -0.0220 14 7 1.5125 -7.2652 -0.0279 15 6 0.0448 -7.4672 -0.0219 16 6 -0.1844 -8.6563 -0.9860 17 6 1.1517 -9.4278 -0.9900 18 6 1.7373 -9.4541 -2.3783 19 8 1.1304 -8.9608 -3.2994 20 8 2.9330 -10.0255 -2.5917 21 6 0.9470 -10.8532 -0.4730 22 9 0.3881 -10.8085 0.8087 23 9 0.0856 -11.5421 -1.3337 24 9 2.1799 -11.5122 -0.4215 25 6 2.0712 -8.6371 -0.0340 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 0.5426 -4.9308 -0.0168 32 1 -0.3004 -7.7162 0.9815 33 1 -0.4631 -6.5754 -0.3892 34 1 -0.4172 -8.2964 -1.9882 35 1 -0.9884 -9.2929 -0.6165 36 1 3.2677 -10.0177 -3.4989 37 1 3.0942 -8.6293 -0.4105 38 1 2.0391 -9.0652 0.9679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:02 Heat of formation + Delta-G solvation = -264.078729 kcal Electronic energy + Delta-G solvation = -28442.205725 eV Core-core repulsion = 23677.118322 eV Total energy + Delta-G solvation = -4765.087404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.68342 -48.16590 -48.09101 -41.32071 -39.82852 -37.81053 -36.62254 -34.91775 -33.19746 -32.56168 -30.03344 -29.59486 -26.40458 -25.13473 -24.26583 -23.60011 -21.14155 -20.76016 -20.14644 -19.23442 -18.90503 -18.77008 -18.18552 -18.02358 -16.51377 -16.47582 -15.78360 -15.68330 -15.64723 -14.96240 -14.95205 -14.56586 -14.55215 -14.52682 -14.29513 -14.19881 -14.01445 -13.92311 -13.65626 -13.03974 -12.78026 -12.72271 -12.51413 -12.28812 -12.18101 -11.89640 -11.54467 -11.20894 -11.17164 -11.05422 -10.65464 -10.37404 -10.10248 -9.61698 -9.30312 -9.07371 -8.53358 -8.34252 -6.11398 -4.14160 1.34136 2.02749 2.17248 2.56440 3.07985 3.13530 3.28622 3.33685 3.34890 3.39161 3.53553 3.91336 3.95082 4.22286 4.42908 4.53284 4.56727 4.72712 5.04432 5.07971 5.23843 5.25943 5.29481 5.54508 5.79302 5.95096 6.23781 6.33402 6.70741 6.87321 7.05739 7.28324 7.51187 7.58933 7.87145 8.14239 8.27552 8.77858 8.91996 9.50752 11.00254 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.027254 B = 0.002593 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.136955 B =10796.489323 C =10943.622546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.731 5.731 12 C 0.725 3.275 13 O -0.587 6.587 14 N -0.646 5.646 15 C 0.102 3.898 16 C -0.125 4.125 17 C -0.123 4.123 18 C 0.499 3.501 19 O -0.480 6.480 20 O -0.499 6.499 21 C 0.475 3.525 22 F -0.166 7.166 23 F -0.173 7.173 24 F -0.164 7.164 25 C 0.143 3.857 26 H 0.262 0.738 27 H 0.023 0.977 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.394 0.606 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.421 0.579 37 H 0.109 0.891 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 -25.154 -1.575 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.384 5.384 12 C 0.428 3.572 13 O -0.465 6.465 14 N -0.385 5.385 15 C -0.021 4.021 16 C -0.163 4.163 17 C -0.127 4.127 18 C 0.338 3.662 19 O -0.366 6.366 20 O -0.312 6.312 21 C 0.420 3.580 22 F -0.147 7.147 23 F -0.155 7.155 24 F -0.145 7.145 25 C 0.018 3.982 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.228 0.772 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.120 0.880 36 H 0.282 0.718 37 H 0.128 0.872 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.170 -24.731 -1.418 24.799 hybrid contribution 0.001 0.600 -0.573 0.829 sum -1.169 -24.131 -1.991 24.241 Atomic orbital electron populations 1.69954 1.06095 1.26902 1.50334 1.24994 0.94901 0.99425 0.94951 0.86500 0.79844 0.82938 0.78209 1.20560 1.21168 1.19696 1.21037 0.93278 0.90285 1.51419 0.92185 1.19327 0.94230 0.90996 0.97867 1.21675 0.95738 0.80054 1.00864 1.45553 1.10041 1.04930 1.77917 1.15434 0.84847 0.79143 0.77815 1.90924 1.11284 1.85725 1.58586 1.47989 1.06627 1.03933 1.79999 1.22497 0.81738 0.98326 0.99578 1.22913 0.91882 0.96903 1.04591 1.22768 1.02409 0.93760 0.93788 1.21954 0.79535 0.75000 0.89734 1.90762 1.60525 1.41633 1.43662 1.84502 1.34609 1.72823 1.39250 1.19638 0.74783 0.87399 0.76150 1.93235 1.85420 1.96591 1.39487 1.93242 1.70723 1.81568 1.69940 1.93278 1.42339 1.82728 1.96122 1.21988 0.97531 0.81038 0.97684 0.92829 0.95896 0.95939 0.92618 0.92496 0.77203 0.89739 0.88835 0.86550 0.88038 0.71847 0.87227 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 10 C 0.14 2.94 5.61 -4.05 -0.02 2.92 16 11 N -0.73 -12.78 5.53 -65.23 -0.36 -13.14 16 12 C 0.73 12.59 8.57 -86.92 -0.74 11.84 16 13 O -0.59 -12.41 16.61 5.28 0.09 -12.32 16 14 N -0.65 -8.19 3.31 -174.75 -0.58 -8.77 16 15 C 0.10 0.90 6.94 -2.19 -0.02 0.89 16 16 C -0.12 -1.00 5.91 -25.12 -0.15 -1.15 16 17 C -0.12 -1.13 0.51 -154.24 -0.08 -1.20 16 18 C 0.50 5.16 6.65 36.01 0.24 5.40 16 19 O -0.48 -6.13 16.02 -18.75 -0.30 -6.43 16 20 O -0.50 -4.02 12.27 -39.26 -0.48 -4.50 16 21 C 0.48 3.99 2.06 37.16 0.08 4.06 16 22 F -0.17 -1.31 16.05 2.25 0.04 -1.27 16 23 F -0.17 -1.53 16.79 2.25 0.04 -1.49 16 24 F -0.16 -1.46 16.14 2.25 0.04 -1.42 16 25 C 0.14 1.49 5.85 -2.40 -0.01 1.48 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.39 5.93 6.87 -40.82 -0.28 5.65 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.79 6.86 -51.93 -0.36 0.43 16 34 H 0.12 1.07 6.47 -51.93 -0.34 0.74 16 35 H 0.10 0.59 7.40 -51.93 -0.38 0.20 16 36 H 0.42 1.60 9.10 45.56 0.41 2.01 16 37 H 0.11 1.28 7.39 -51.93 -0.38 0.90 16 38 H 0.10 0.84 7.33 -51.93 -0.38 0.46 16 LS Contribution 336.81 15.07 5.08 5.08 Total: -1.00 -34.34 336.81 -5.35 -39.70 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.36 Total: 2.16 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -1.26 Total: 11.32 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.20 Total: -47.04 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.69 Total: -23.25 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.11 Total: -4.18 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.34 -5.35 -39.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -224.381 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds