Wall clock time and date at job start Tue Mar 31 2020 13:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.34770 * 120.00393 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99788 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00528 * 179.97438 * 12 11 10 15 15 C 1.48149 * 127.83454 * 359.68711 * 14 12 11 16 16 C 1.54787 * 104.41724 * 140.36513 * 15 14 12 17 17 C 1.54285 * 104.91974 * 24.16478 * 16 15 14 18 18 C 1.50704 * 110.34088 * 240.93562 * 17 16 15 19 19 O 1.20828 * 120.00047 * 356.99120 * 18 17 16 20 20 O 1.34230 * 119.99889 * 176.99213 * 18 17 16 21 21 C 1.53001 * 110.43131 * 118.72626 * 17 16 15 22 22 F 1.39903 * 109.46709 * 302.95471 * 21 17 16 23 23 F 1.39898 * 109.46917 * 62.95565 * 21 17 16 24 24 F 1.39896 * 109.47228 * 182.95480 * 21 17 16 25 25 C 1.48137 * 127.84125 * 180.02562 * 14 12 11 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 0.97000 * 120.00040 * 359.97438 * 11 10 9 32 32 H 1.08996 * 110.40318 * 259.19963 * 15 14 12 33 33 H 1.09004 * 110.40672 * 21.62516 * 15 14 12 34 34 H 1.09001 * 110.52444 * 265.22009 * 16 15 14 35 35 H 1.09000 * 110.28720 * 142.98326 * 16 15 14 36 36 H 0.96699 * 117.00020 * 180.02562 * 20 18 17 37 37 H 1.09006 * 110.40975 * 338.37568 * 25 14 12 38 38 H 1.09001 * 110.40786 * 100.68740 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5126 -4.9308 -0.0168 12 6 2.1863 -6.0980 -0.0226 13 8 3.4023 -6.0980 -0.0220 14 7 1.5125 -7.2652 -0.0279 15 6 0.0448 -7.4672 -0.0219 16 6 -0.1844 -8.6563 -0.9860 17 6 1.1517 -9.4278 -0.9900 18 6 1.7373 -9.4541 -2.3783 19 8 1.1304 -8.9608 -3.2994 20 8 2.9330 -10.0255 -2.5917 21 6 0.9470 -10.8532 -0.4730 22 9 0.3881 -10.8085 0.8087 23 9 0.0856 -11.5421 -1.3337 24 9 2.1799 -11.5122 -0.4215 25 6 2.0712 -8.6371 -0.0340 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 0.5426 -4.9308 -0.0168 32 1 -0.3004 -7.7162 0.9815 33 1 -0.4631 -6.5754 -0.3892 34 1 -0.4172 -8.2964 -1.9882 35 1 -0.9884 -9.2929 -0.6165 36 1 3.2677 -10.0177 -3.4989 37 1 3.0942 -8.6293 -0.4105 38 1 2.0391 -9.0652 0.9679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:01 Heat of formation + Delta-G solvation = -288.611068 kcal Electronic energy + Delta-G solvation = -28443.269527 eV Core-core repulsion = 23677.118322 eV Total energy + Delta-G solvation = -4766.151206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.35461 -48.82799 -48.76617 -42.16936 -40.99366 -38.84410 -37.41620 -36.60810 -34.90041 -33.83158 -31.38058 -30.80467 -27.61164 -26.27871 -25.56864 -24.44850 -22.93167 -21.52673 -21.37636 -19.99314 -19.72970 -19.52444 -19.10789 -18.85454 -18.48410 -17.40891 -17.08386 -16.85861 -16.54884 -16.39925 -15.82136 -15.62881 -15.54363 -15.30812 -15.22779 -15.11064 -14.91134 -14.85651 -14.75896 -14.39456 -14.27263 -13.61735 -13.55575 -13.28671 -13.20947 -12.94586 -12.90166 -12.66969 -12.51878 -12.26509 -12.21722 -12.00401 -11.70241 -11.52173 -11.27177 -10.60271 -10.32593 -9.74608 -8.23544 -6.33536 0.56286 1.16417 1.42963 1.43142 1.45203 1.54512 1.59871 1.99708 2.39574 2.40283 2.43386 2.80120 2.97202 3.11607 3.20675 3.28150 3.81687 3.88595 4.06578 4.20452 4.35162 4.42298 4.50181 4.50799 4.63894 4.85189 4.86655 4.98452 5.26344 5.29099 5.48846 5.59095 5.77870 5.87811 6.17047 6.63161 6.79251 6.86271 7.35675 7.42844 8.88333 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.027254 B = 0.002593 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.136955 B =10796.489323 C =10943.622546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.727 5.727 12 C 0.724 3.276 13 O -0.631 6.631 14 N -0.644 5.644 15 C 0.097 3.903 16 C -0.119 4.119 17 C -0.121 4.121 18 C 0.497 3.503 19 O -0.510 6.510 20 O -0.497 6.497 21 C 0.484 3.516 22 F -0.159 7.159 23 F -0.174 7.174 24 F -0.166 7.166 25 C 0.140 3.860 26 H 0.266 0.734 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.406 0.594 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.438 0.562 37 H 0.095 0.905 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.075 -25.995 -1.102 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.382 5.382 12 C 0.427 3.573 13 O -0.512 6.512 14 N -0.382 5.382 15 C -0.025 4.025 16 C -0.157 4.157 17 C -0.125 4.125 18 C 0.337 3.663 19 O -0.398 6.398 20 O -0.311 6.311 21 C 0.429 3.571 22 F -0.140 7.140 23 F -0.155 7.155 24 F -0.148 7.148 25 C 0.016 3.984 26 H 0.075 0.925 27 H 0.030 0.970 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.243 0.757 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.148 0.852 36 H 0.301 0.699 37 H 0.113 0.887 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.582 -25.639 -0.953 25.705 hybrid contribution 0.113 0.754 -0.739 1.062 sum -1.469 -24.885 -1.692 24.985 Atomic orbital electron populations 1.70053 1.07487 1.27984 1.50981 1.25848 0.95791 1.03011 0.94422 0.85457 0.78678 0.78530 0.78463 1.19893 1.20516 1.19032 1.21457 0.93621 0.91859 1.51551 0.92270 1.19121 0.94200 0.91519 0.96442 1.21137 0.94684 0.80749 0.99819 1.45213 1.10496 1.04136 1.78332 1.15452 0.84374 0.79985 0.77537 1.90888 1.13276 1.86598 1.60441 1.47887 1.08560 1.03346 1.78417 1.22841 0.79131 0.99008 1.01522 1.22929 0.92068 0.96786 1.03918 1.22735 1.02582 0.94323 0.92831 1.22211 0.79733 0.74388 0.89930 1.90755 1.61381 1.43016 1.44641 1.84479 1.33671 1.72049 1.40901 1.19412 0.74684 0.86727 0.76278 1.93253 1.85276 1.96523 1.38951 1.93247 1.70706 1.81495 1.70065 1.93278 1.42607 1.82731 1.96142 1.22142 0.97045 0.79979 0.99213 0.92541 0.97037 0.97376 0.93852 0.93376 0.75730 0.86847 0.88466 0.87679 0.85177 0.69856 0.88694 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.69 13.29 21.45 0.28 -53.40 16 2 C 0.01 0.45 5.46 84.66 0.46 0.92 16 3 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -30.28 9.11 25.60 0.23 -30.04 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.23 5.09 29.85 0.15 1.38 16 10 C 0.16 6.88 5.61 86.38 0.48 7.36 16 11 N -0.73 -25.35 5.53 -478.55 -2.65 -28.00 16 12 C 0.72 24.94 8.57 179.06 1.53 26.47 16 13 O -0.63 -26.93 16.61 -4.01 -0.07 -27.00 16 14 N -0.64 -15.51 3.31 -825.05 -2.73 -18.25 16 15 C 0.10 1.48 6.94 86.67 0.60 2.09 16 16 C -0.12 -1.64 5.91 31.64 0.19 -1.45 16 17 C -0.12 -1.99 0.51 -52.01 -0.03 -2.01 16 18 C 0.50 9.80 6.65 71.24 0.47 10.27 16 19 O -0.51 -12.75 16.02 21.96 0.35 -12.40 16 20 O -0.50 -7.50 12.27 -51.42 -0.63 -8.13 16 21 C 0.48 7.00 2.06 71.98 0.15 7.15 16 22 F -0.16 -2.02 16.05 44.97 0.72 -1.29 16 23 F -0.17 -2.67 16.79 44.97 0.75 -1.92 16 24 F -0.17 -2.65 16.14 44.97 0.73 -1.93 16 25 C 0.14 2.72 5.85 86.55 0.51 3.23 16 26 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 27 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.41 12.00 6.87 -92.71 -0.64 11.37 16 32 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.44 6.86 -2.38 -0.02 1.43 16 34 H 0.10 1.78 6.47 -2.39 -0.02 1.77 16 35 H 0.13 1.06 7.40 -2.39 -0.02 1.05 16 36 H 0.44 2.92 9.10 -74.06 -0.67 2.25 16 37 H 0.09 2.16 7.39 -2.38 -0.02 2.15 16 38 H 0.12 1.78 7.33 -2.39 -0.02 1.77 16 Total: -1.00 -73.78 336.81 3.38 -70.40 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -0.16 Total: 11.21 kcal Atomic # 6 Polarization: 20.60 SS G_CDS: 4.76 Total: 25.35 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -5.09 Total: -99.65 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -0.35 Total: -47.53 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 2.20 Total: -5.14 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -73.78 3.38 -70.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.207 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -291.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds