Wall clock time and date at job start Tue Mar 31 2020 13:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99806 * 3 2 1 6 6 H 1.48498 * 109.47127 * 59.99700 * 3 2 1 7 7 C 1.37877 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00490 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99828 * 179.72339 * 11 10 9 13 13 O 1.21593 * 119.99949 * 0.28071 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.27942 * 12 11 10 15 15 C 1.47427 * 125.64523 * 359.69225 * 14 12 11 16 16 C 1.55133 * 104.72081 * 155.82127 * 15 14 12 17 17 C 1.55157 * 101.48578 * 37.29249 * 16 15 14 18 18 C 1.50703 * 110.71948 * 82.69872 * 17 16 15 19 19 O 1.20828 * 119.99932 * 5.01902 * 18 17 16 20 20 O 1.34225 * 120.00192 * 185.02529 * 18 17 16 21 21 C 1.53003 * 110.87110 * 205.89786 * 17 16 15 22 22 F 1.39909 * 109.46754 * 175.06573 * 21 17 16 23 23 F 1.39896 * 109.47280 * 295.06325 * 21 17 16 24 24 F 1.39898 * 109.47056 * 55.06932 * 21 17 16 25 25 C 1.47021 * 125.64915 * 180.02562 * 14 12 11 26 26 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46801 * 59.99996 * 9 7 2 28 28 H 1.09000 * 109.46987 * 300.00765 * 9 7 2 29 29 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 30 30 H 1.08994 * 109.46974 * 300.00349 * 10 9 7 31 31 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 32 32 H 1.09006 * 110.36477 * 274.74432 * 15 14 12 33 33 H 1.09000 * 110.36585 * 37.07226 * 15 14 12 34 34 H 1.09000 * 111.18680 * 279.19110 * 16 15 14 35 35 H 1.08999 * 110.90638 * 155.27535 * 16 15 14 36 36 H 0.96700 * 117.00389 * 180.02562 * 20 18 17 37 37 H 1.08998 * 109.88345 * 300.43408 * 25 14 12 38 38 H 1.08997 * 109.88431 * 61.59937 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5125 -4.9308 0.0032 12 6 2.1863 -6.0980 -0.0023 13 8 3.4023 -6.0981 -0.0036 14 7 1.5124 -7.2652 -0.0064 15 6 0.0453 -7.4102 0.0010 16 6 -0.2159 -8.8069 -0.6216 17 6 0.9651 -9.6294 -0.0418 18 6 0.6459 -10.1128 1.3495 19 8 -0.4501 -9.9188 1.8199 20 8 1.5790 -10.7587 2.0662 21 6 1.3100 -10.8068 -0.9559 22 9 2.4461 -11.4602 -0.4661 23 9 0.2354 -11.7019 -0.9891 24 9 1.5642 -10.3350 -2.2482 25 6 2.1186 -8.6046 -0.0120 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6246 -2.5562 0.8919 29 1 2.8724 -3.6040 0.8910 30 1 2.8711 -3.6048 -0.8890 31 1 0.5425 -4.9308 0.0039 32 1 -0.3347 -7.3703 1.0219 33 1 -0.4159 -6.6320 -0.6071 34 1 -0.1680 -8.7683 -1.7098 35 1 -1.1727 -9.2086 -0.2881 36 1 1.3276 -11.0501 2.9533 37 1 2.7438 -8.7249 -0.8967 38 1 2.7162 -8.7449 0.8886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:04 Heat of formation + Delta-G solvation = -266.014445 kcal Electronic energy + Delta-G solvation = -28343.825585 eV Core-core repulsion = 23578.654243 eV Total energy + Delta-G solvation = -4765.171342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.68697 -48.17947 -48.10123 -41.45187 -39.88227 -37.82064 -36.69246 -34.91051 -33.25090 -32.59162 -30.08957 -29.57755 -26.43718 -25.02428 -24.39545 -23.54394 -21.16549 -20.85954 -20.07565 -19.39852 -18.96241 -18.72323 -18.25908 -18.04215 -16.51905 -16.41467 -16.08462 -15.60192 -15.55940 -15.00874 -14.98002 -14.56166 -14.53485 -14.48089 -14.28963 -14.22258 -14.09084 -13.74263 -13.72816 -13.17376 -13.05429 -12.75868 -12.35809 -12.29870 -12.19197 -11.93629 -11.90883 -11.20523 -11.19235 -11.06800 -10.63650 -10.37451 -10.07601 -9.61434 -9.28189 -8.96710 -8.52015 -8.32123 -6.11356 -4.14015 1.24667 1.96548 2.07860 2.59181 3.00607 3.09868 3.27529 3.35318 3.39445 3.40545 3.43598 3.84708 3.88703 4.22496 4.41317 4.47389 4.50898 4.70522 5.07660 5.17116 5.21799 5.25343 5.26080 5.48698 5.83140 5.86798 6.25588 6.34352 6.71668 6.88792 7.03161 7.18398 7.51767 7.59321 7.87480 8.14972 8.28160 8.79581 8.92551 9.51007 11.00335 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.002530 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.424127 B =11062.672549 C =11210.530786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.732 5.732 12 C 0.721 3.279 13 O -0.587 6.587 14 N -0.644 5.644 15 C 0.099 3.901 16 C -0.112 4.112 17 C -0.125 4.125 18 C 0.501 3.499 19 O -0.480 6.480 20 O -0.499 6.499 21 C 0.478 3.522 22 F -0.163 7.163 23 F -0.172 7.172 24 F -0.164 7.164 25 C 0.148 3.852 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.394 0.606 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.422 0.578 37 H 0.093 0.907 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.129 -25.499 0.135 25.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.385 5.385 12 C 0.423 3.577 13 O -0.465 6.465 14 N -0.385 5.385 15 C -0.024 4.024 16 C -0.150 4.150 17 C -0.128 4.128 18 C 0.340 3.660 19 O -0.365 6.365 20 O -0.311 6.311 21 C 0.423 3.577 22 F -0.144 7.144 23 F -0.154 7.154 24 F -0.146 7.146 25 C 0.024 3.976 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.228 0.772 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.282 0.718 37 H 0.112 0.888 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.486 -25.077 -0.133 25.121 hybrid contribution -0.279 0.460 0.456 0.705 sum -1.766 -24.617 0.322 24.682 Atomic orbital electron populations 1.69964 1.06094 1.26787 1.50451 1.24996 0.94898 0.99436 0.94975 0.86450 0.80188 0.83289 0.77608 1.19549 1.20941 1.20944 1.21077 0.93321 0.90276 1.51246 0.92124 1.19333 0.94241 0.91033 0.97861 1.21667 0.95721 0.80074 1.00877 1.45567 1.10013 1.04966 1.77995 1.15472 0.84926 0.79241 0.78086 1.90926 1.11304 1.85837 1.58427 1.47501 1.06266 1.04054 1.80676 1.22405 0.81370 0.96662 1.01984 1.23059 0.96182 0.93560 1.02203 1.22829 1.03784 0.95450 0.90775 1.21900 0.82272 0.74988 0.86870 1.90776 1.23181 1.52094 1.70474 1.84515 1.44673 1.68518 1.33408 1.19507 0.75267 0.83017 0.79921 1.93285 1.51250 1.82535 1.87378 1.93243 1.55636 1.70007 1.96482 1.93248 1.94009 1.88090 1.39213 1.21508 0.91304 0.79412 1.05390 0.92892 0.95926 0.95931 0.92579 0.92530 0.77218 0.90195 0.88824 0.87390 0.86658 0.71793 0.88843 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C 0.14 2.93 5.61 -4.04 -0.02 2.90 16 11 N -0.73 -12.73 5.52 -65.23 -0.36 -13.09 16 12 C 0.72 12.47 8.49 -86.92 -0.74 11.73 16 13 O -0.59 -12.39 16.67 5.28 0.09 -12.30 16 14 N -0.64 -8.25 3.32 -176.09 -0.59 -8.83 16 15 C 0.10 0.94 6.33 -2.41 -0.02 0.92 16 16 C -0.11 -0.86 5.61 -24.46 -0.14 -1.00 16 17 C -0.13 -1.09 0.40 -153.82 -0.06 -1.15 16 18 C 0.50 4.42 6.46 36.01 0.23 4.65 16 19 O -0.48 -5.09 16.17 -18.75 -0.30 -5.39 16 20 O -0.50 -3.32 12.38 -39.24 -0.49 -3.81 16 21 C 0.48 4.11 2.24 37.16 0.08 4.19 16 22 F -0.16 -1.49 16.26 2.25 0.04 -1.45 16 23 F -0.17 -1.49 16.91 2.25 0.04 -1.46 16 24 F -0.16 -1.47 15.79 2.25 0.04 -1.44 16 25 C 0.15 1.60 5.77 -3.06 -0.02 1.59 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.39 5.92 6.95 -40.82 -0.28 5.64 16 32 H 0.08 0.77 7.96 -51.93 -0.41 0.36 16 33 H 0.09 0.79 7.29 -51.93 -0.38 0.42 16 34 H 0.11 0.71 7.39 -51.93 -0.38 0.33 16 35 H 0.12 0.79 7.31 -51.93 -0.38 0.41 16 36 H 0.42 0.92 9.10 45.56 0.41 1.33 16 37 H 0.09 1.02 7.31 -51.93 -0.38 0.64 16 38 H 0.09 1.02 7.63 -51.93 -0.40 0.63 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -33.92 337.29 -5.40 -39.32 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.43 Total: 1.31 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -1.23 Total: 10.96 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.21 Total: -47.02 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.70 Total: -21.50 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.11 Total: -4.34 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.92 -5.40 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.694 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds