Wall clock time and date at job start Tue Mar 31 2020 13:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99806 * 3 2 1 6 6 H 1.48498 * 109.47127 * 59.99700 * 3 2 1 7 7 C 1.37877 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00490 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99828 * 179.72339 * 11 10 9 13 13 O 1.21593 * 119.99949 * 0.28071 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.27942 * 12 11 10 15 15 C 1.47427 * 125.64523 * 359.69225 * 14 12 11 16 16 C 1.55133 * 104.72081 * 155.82127 * 15 14 12 17 17 C 1.55157 * 101.48578 * 37.29249 * 16 15 14 18 18 C 1.50703 * 110.71948 * 82.69872 * 17 16 15 19 19 O 1.20828 * 119.99932 * 5.01902 * 18 17 16 20 20 O 1.34225 * 120.00192 * 185.02529 * 18 17 16 21 21 C 1.53003 * 110.87110 * 205.89786 * 17 16 15 22 22 F 1.39909 * 109.46754 * 175.06573 * 21 17 16 23 23 F 1.39896 * 109.47280 * 295.06325 * 21 17 16 24 24 F 1.39898 * 109.47056 * 55.06932 * 21 17 16 25 25 C 1.47021 * 125.64915 * 180.02562 * 14 12 11 26 26 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46801 * 59.99996 * 9 7 2 28 28 H 1.09000 * 109.46987 * 300.00765 * 9 7 2 29 29 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 30 30 H 1.08994 * 109.46974 * 300.00349 * 10 9 7 31 31 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 32 32 H 1.09006 * 110.36477 * 274.74432 * 15 14 12 33 33 H 1.09000 * 110.36585 * 37.07226 * 15 14 12 34 34 H 1.09000 * 111.18680 * 279.19110 * 16 15 14 35 35 H 1.08999 * 110.90638 * 155.27535 * 16 15 14 36 36 H 0.96700 * 117.00389 * 180.02562 * 20 18 17 37 37 H 1.08998 * 109.88345 * 300.43408 * 25 14 12 38 38 H 1.08997 * 109.88431 * 61.59937 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5125 -4.9308 0.0032 12 6 2.1863 -6.0980 -0.0023 13 8 3.4023 -6.0981 -0.0036 14 7 1.5124 -7.2652 -0.0064 15 6 0.0453 -7.4102 0.0010 16 6 -0.2159 -8.8069 -0.6216 17 6 0.9651 -9.6294 -0.0418 18 6 0.6459 -10.1128 1.3495 19 8 -0.4501 -9.9188 1.8199 20 8 1.5790 -10.7587 2.0662 21 6 1.3100 -10.8068 -0.9559 22 9 2.4461 -11.4602 -0.4661 23 9 0.2354 -11.7019 -0.9891 24 9 1.5642 -10.3350 -2.2482 25 6 2.1186 -8.6046 -0.0120 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6246 -2.5562 0.8919 29 1 2.8724 -3.6040 0.8910 30 1 2.8711 -3.6048 -0.8890 31 1 0.5425 -4.9308 0.0039 32 1 -0.3347 -7.3703 1.0219 33 1 -0.4159 -6.6320 -0.6071 34 1 -0.1680 -8.7683 -1.7098 35 1 -1.1727 -9.2086 -0.2881 36 1 1.3276 -11.0501 2.9533 37 1 2.7438 -8.7249 -0.8967 38 1 2.7162 -8.7449 0.8886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:04 Heat of formation + Delta-G solvation = -290.005425 kcal Electronic energy + Delta-G solvation = -28344.865912 eV Core-core repulsion = 23578.654243 eV Total energy + Delta-G solvation = -4766.211669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.38385 -48.87067 -48.80457 -42.23527 -41.01416 -38.83461 -37.36437 -36.60012 -34.90651 -33.90846 -31.37043 -30.87867 -27.61534 -26.29130 -25.46576 -24.50409 -22.91934 -21.61740 -21.31524 -20.13711 -19.75421 -19.46370 -19.20213 -18.80507 -18.46683 -17.41875 -17.08445 -16.92478 -16.51044 -16.35982 -15.78436 -15.70886 -15.58774 -15.33517 -15.25067 -15.04663 -14.94891 -14.89108 -14.68019 -14.35832 -14.19495 -14.04473 -13.76887 -13.20931 -13.07380 -12.94902 -12.84119 -12.63502 -12.61129 -12.50215 -12.24863 -11.91078 -11.69237 -11.51017 -11.25161 -10.60118 -10.27887 -9.68852 -8.23070 -6.32871 0.55314 1.14404 1.42238 1.42818 1.44020 1.56078 1.60718 2.01741 2.28235 2.38127 2.42182 2.72950 2.95578 3.12193 3.13826 3.22586 3.73728 3.87607 4.00676 4.26818 4.33467 4.40793 4.49162 4.52466 4.62604 4.78007 4.86948 4.98184 5.27322 5.29625 5.50014 5.60245 5.77366 5.84957 6.17852 6.67149 6.80181 6.85880 7.36432 7.43345 8.88996 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.002530 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.424127 B =11062.672549 C =11210.530786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.727 5.727 12 C 0.721 3.279 13 O -0.629 6.629 14 N -0.638 5.638 15 C 0.093 3.907 16 C -0.105 4.105 17 C -0.120 4.120 18 C 0.504 3.496 19 O -0.499 6.499 20 O -0.497 6.497 21 C 0.483 3.517 22 F -0.166 7.166 23 F -0.170 7.170 24 F -0.166 7.166 25 C 0.145 3.855 26 H 0.265 0.735 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.406 0.594 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.441 0.559 37 H 0.093 0.907 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.415 -26.180 0.058 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.382 5.382 12 C 0.423 3.577 13 O -0.510 6.510 14 N -0.377 5.377 15 C -0.029 4.029 16 C -0.142 4.142 17 C -0.123 4.123 18 C 0.344 3.656 19 O -0.386 6.386 20 O -0.312 6.312 21 C 0.428 3.572 22 F -0.147 7.147 23 F -0.151 7.151 24 F -0.147 7.147 25 C 0.021 3.979 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.242 0.758 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.305 0.695 37 H 0.111 0.889 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.809 -25.821 -0.194 25.885 hybrid contribution -0.204 0.570 0.511 0.792 sum -2.013 -25.251 0.318 25.333 Atomic orbital electron populations 1.70060 1.07483 1.27900 1.51107 1.25844 0.95783 1.03007 0.94466 0.85408 0.79014 0.78866 0.77834 1.18964 1.20275 1.20323 1.21485 0.93630 0.91844 1.51354 0.92255 1.19129 0.94220 0.91546 0.96453 1.21140 0.94668 0.80694 0.99909 1.45229 1.10463 1.04149 1.78337 1.15483 0.84438 0.80019 0.77804 1.90893 1.13234 1.86655 1.60241 1.47389 1.07859 1.03438 1.79008 1.22650 0.79111 0.98398 1.02746 1.23112 0.96313 0.91869 1.02916 1.22758 1.03265 0.95040 0.91285 1.21849 0.82152 0.74777 0.86843 1.90775 1.23943 1.53042 1.70850 1.84484 1.44076 1.67880 1.34716 1.19404 0.75171 0.82873 0.79739 1.93282 1.51455 1.82594 1.87412 1.93250 1.55520 1.69911 1.96461 1.93249 1.94021 1.88101 1.39315 1.21578 0.92154 0.78854 1.05320 0.92568 0.97121 0.97290 0.93629 0.93442 0.75756 0.89947 0.87575 0.85999 0.85265 0.69537 0.88890 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.56 13.29 21.45 0.28 -53.28 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.16 6.81 5.61 86.38 0.48 7.29 16 11 N -0.73 -25.15 5.52 -478.54 -2.64 -27.79 16 12 C 0.72 24.71 8.49 179.05 1.52 26.23 16 13 O -0.63 -26.72 16.67 -4.01 -0.07 -26.79 16 14 N -0.64 -15.68 3.32 -829.29 -2.76 -18.44 16 15 C 0.09 1.60 6.33 86.93 0.55 2.15 16 16 C -0.10 -1.37 5.61 32.06 0.18 -1.19 16 17 C -0.12 -1.89 0.40 -51.74 -0.02 -1.91 16 18 C 0.50 7.99 6.46 71.24 0.46 8.45 16 19 O -0.50 -9.66 16.17 21.96 0.36 -9.31 16 20 O -0.50 -5.72 12.38 -51.37 -0.64 -6.36 16 21 C 0.48 7.46 2.24 71.98 0.16 7.62 16 22 F -0.17 -2.78 16.26 44.97 0.73 -2.05 16 23 F -0.17 -2.60 16.91 44.97 0.76 -1.84 16 24 F -0.17 -2.68 15.79 44.97 0.71 -1.97 16 25 C 0.14 2.98 5.77 86.73 0.50 3.48 16 26 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 29 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.41 11.95 6.95 -92.71 -0.64 11.30 16 32 H 0.08 1.44 7.96 -2.38 -0.02 1.42 16 33 H 0.11 1.59 7.29 -2.39 -0.02 1.57 16 34 H 0.12 1.28 7.39 -2.39 -0.02 1.27 16 35 H 0.13 1.42 7.31 -2.39 -0.02 1.40 16 36 H 0.44 1.06 9.10 -74.06 -0.67 0.38 16 37 H 0.09 1.95 7.31 -2.39 -0.02 1.93 16 38 H 0.09 1.92 7.63 -2.39 -0.02 1.90 16 Total: -1.00 -71.90 337.29 3.28 -68.62 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -0.18 Total: 9.41 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 4.68 Total: 24.55 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -5.11 Total: -99.51 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.35 Total: -42.46 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 2.20 Total: -5.86 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -71.90 3.28 -68.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.385 kcal (2) G-P(sol) polarization free energy of solvation -71.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -290.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds