Wall clock time and date at job start Tue Mar 31 2020 13:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86804 * 120.00092 * 2 1 4 4 H 1.48498 * 109.46906 * 274.97725 * 3 2 1 5 5 H 1.48497 * 109.47156 * 34.97808 * 3 2 1 6 6 H 1.48498 * 109.47212 * 154.97918 * 3 2 1 7 7 C 1.38952 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00372 * 158.23531 * 7 2 1 9 9 N 1.37100 * 119.99878 * 338.22833 * 7 2 1 10 10 C 1.46497 * 119.99887 * 348.22036 * 9 7 2 11 11 C 1.50697 * 109.47492 * 96.37823 * 10 9 7 12 12 O 1.20830 * 119.99659 * 4.85650 * 11 10 9 13 13 O 1.34234 * 120.00170 * 184.85684 * 11 10 9 14 14 C 1.34771 * 120.00171 * 168.21376 * 9 7 2 15 15 O 1.21296 * 119.99801 * 4.67562 * 14 9 7 16 16 C 1.50699 * 120.00207 * 184.67418 * 14 9 7 17 17 H 1.08994 * 110.28749 * 32.17138 * 16 14 9 18 18 C 1.54258 * 110.32427 * 270.04398 * 16 14 9 19 19 C 1.54374 * 105.06299 * 241.10571 * 18 16 14 20 20 N 1.48564 * 104.69796 * 336.08779 * 19 18 16 21 21 C 1.46899 * 111.00242 * 159.09829 * 20 19 18 22 22 C 1.53005 * 109.46735 * 69.87558 * 21 20 19 23 23 F 1.39892 * 109.47404 * 60.00190 * 22 21 20 24 24 F 1.39904 * 109.46630 * 180.02562 * 22 21 20 25 25 F 1.39898 * 109.47156 * 299.99876 * 22 21 20 26 26 C 1.48852 * 104.07546 * 39.46927 * 20 19 18 27 27 H 0.97000 * 119.99976 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47021 * 216.37708 * 10 9 7 29 29 H 1.09001 * 109.46953 * 336.37571 * 10 9 7 30 30 H 0.96699 * 117.00061 * 179.97438 * 13 11 10 31 31 H 1.08997 * 110.32289 * 122.20853 * 18 16 14 32 32 H 1.08998 * 110.32440 * 0.02562 * 18 16 14 33 33 H 1.08999 * 110.41656 * 94.92475 * 19 18 16 34 34 H 1.09000 * 110.41616 * 217.25508 * 19 18 16 35 35 H 1.08998 * 109.47148 * 189.87527 * 21 20 19 36 36 H 1.08996 * 109.47134 * 309.87515 * 21 20 19 37 37 H 1.09005 * 110.39624 * 201.75404 * 26 20 19 38 38 H 1.09002 * 110.39288 * 79.34112 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3904 2.1071 -1.3948 5 1 1.5022 2.6200 0.8026 6 1 3.5943 1.4121 0.5921 7 6 2.0088 -1.2033 -0.0005 8 1 3.0311 -1.2366 -0.3473 9 7 1.3967 -2.3485 0.4393 10 6 0.1156 -2.2694 1.1455 11 6 -1.0102 -2.5059 0.1720 12 8 -0.7659 -2.8053 -0.9728 13 8 -2.2842 -2.3840 0.5767 14 6 1.9734 -3.5471 0.2220 15 8 3.0729 -3.6077 -0.2866 16 6 1.2522 -4.8119 0.6108 17 1 0.1754 -4.6807 0.5052 18 6 1.6044 -5.2054 2.0602 19 6 2.2734 -6.5922 1.9481 20 7 1.7591 -7.1569 0.6738 21 6 2.6430 -8.2183 0.1737 22 6 2.5370 -9.4421 1.0859 23 9 1.2160 -9.9022 1.0975 24 9 3.3792 -10.4527 0.6099 25 9 2.9196 -9.0901 2.3847 26 6 1.7381 -5.9940 -0.2551 27 1 -0.4850 0.8400 -0.0004 28 1 0.0846 -3.0276 1.9280 29 1 0.0077 -1.2812 1.5927 30 1 -2.9720 -2.5451 -0.0837 31 1 0.7002 -5.2692 2.6655 32 1 2.2984 -4.4836 2.4905 33 1 3.3578 -6.4891 1.9079 34 1 1.9832 -7.2234 2.7880 35 1 2.3449 -8.4925 -0.8382 36 1 3.6723 -7.8598 0.1647 37 1 1.0433 -6.1753 -1.0752 38 1 2.7387 -5.7972 -0.6401 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069534.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:04 Heat of formation + Delta-G solvation = -256.074451 kcal Electronic energy + Delta-G solvation = -29010.790996 eV Core-core repulsion = 24246.050684 eV Total energy + Delta-G solvation = -4764.740312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.14332 -47.70884 -47.56904 -39.97440 -38.94646 -37.58734 -35.33034 -34.63364 -32.95873 -31.70495 -28.87823 -28.28990 -27.69013 -25.03375 -23.29190 -21.86155 -21.27600 -21.00250 -18.77539 -18.62939 -18.48505 -17.40364 -17.28286 -16.94564 -16.63168 -15.78784 -15.66385 -15.21986 -14.66805 -14.55581 -14.52836 -14.29622 -14.12551 -14.07913 -13.93246 -13.77998 -13.76383 -13.27119 -13.03635 -12.75837 -12.43514 -12.08594 -11.81457 -11.71794 -11.59508 -11.45174 -11.13411 -10.99637 -10.89621 -10.62388 -10.49679 -10.40841 -10.34998 -9.79036 -9.11038 -8.75314 -8.57709 -8.04678 -6.54907 -3.96859 2.62876 3.06354 3.19152 3.25473 3.30000 3.47259 3.57973 3.75427 3.96943 3.97382 4.14295 4.37152 4.62800 4.71070 4.82202 4.98938 5.09210 5.19821 5.22146 5.47743 5.63133 5.72719 5.78735 5.87004 5.97538 6.07852 6.16750 6.28379 6.37475 6.57142 6.66942 6.70577 7.39868 7.45371 7.86364 8.26182 8.90296 8.98215 9.20571 9.72584 10.52898 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.003455 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.353158 B = 8102.040076 C = 8767.067024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.028 3.972 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.110 0.890 9 N -0.428 5.428 10 C 0.139 3.861 11 C 0.492 3.508 12 O -0.514 6.514 13 O -0.529 6.529 14 C 0.468 3.532 15 O -0.578 6.578 16 C -0.105 4.105 17 H 0.087 0.913 18 C -0.112 4.112 19 C 0.025 3.975 20 N -0.508 5.508 21 C -0.002 4.002 22 C 0.459 3.541 23 F -0.174 7.174 24 F -0.187 7.187 25 F -0.183 7.183 26 C 0.054 3.946 27 H 0.273 0.727 28 H 0.078 0.922 29 H 0.139 0.861 30 H 0.393 0.607 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.700 -12.316 5.289 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.174 4.174 3 Si 0.755 3.245 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.431 4.431 8 H 0.128 0.872 9 N -0.147 5.147 10 C 0.012 3.988 11 C 0.333 3.667 12 O -0.400 6.400 13 O -0.340 6.340 14 C 0.256 3.744 15 O -0.462 6.462 16 C -0.128 4.128 17 H 0.105 0.895 18 C -0.151 4.151 19 C -0.102 4.102 20 N -0.232 5.232 21 C -0.133 4.133 22 C 0.404 3.596 23 F -0.156 7.156 24 F -0.168 7.168 25 F -0.165 7.165 26 C -0.073 4.073 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.157 0.843 30 H 0.249 0.751 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.430 -12.457 5.085 13.462 hybrid contribution 0.330 0.972 -0.620 1.199 sum -0.100 -11.485 4.465 12.323 Atomic orbital electron populations 1.69822 1.06066 1.28149 1.48421 1.25216 0.95363 0.99992 0.96830 0.85873 0.79588 0.80622 0.78428 1.20465 1.20629 1.19242 1.19770 0.98326 0.83445 1.41567 0.87235 1.43428 1.16332 1.05682 1.49218 1.20960 0.80926 1.05607 0.91299 1.23930 0.82557 0.70931 0.89291 1.90620 1.84218 1.44557 1.20625 1.84532 1.17702 1.84368 1.47382 1.19735 0.87647 0.83977 0.82993 1.90505 1.21360 1.86309 1.47993 1.21902 1.01141 0.94163 0.95564 0.89463 1.22292 1.01272 0.95844 0.95649 1.23408 0.98268 0.95866 0.92691 1.65505 1.44401 1.08739 1.04553 1.23384 0.99973 0.90960 0.98948 1.20466 0.73736 0.85243 0.80123 1.93197 1.35817 1.90102 1.96473 1.93177 1.71898 1.63548 1.88207 1.93159 1.91133 1.91679 1.40514 1.23060 1.02685 0.86892 0.94688 0.91691 0.90460 0.84315 0.75092 0.90390 0.90359 0.92862 0.89159 0.86232 0.89741 0.89496 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.24 9.38 55.50 0.52 -21.72 16 2 C 0.03 0.70 4.94 -17.47 -0.09 0.62 16 3 Si 0.93 19.82 29.61 -169.99 -5.03 14.78 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.30 -8.06 9.43 -14.93 -0.14 -8.20 16 8 H 0.11 3.06 7.30 -52.49 -0.38 2.68 16 9 N -0.43 -10.32 2.22 -116.10 -0.26 -10.58 16 10 C 0.14 2.89 4.85 -5.20 -0.03 2.87 16 11 C 0.49 10.46 5.57 36.00 0.20 10.66 16 12 O -0.51 -12.71 16.71 -18.75 -0.31 -13.03 16 13 O -0.53 -9.19 13.42 -39.27 -0.53 -9.72 16 14 C 0.47 10.77 6.23 -10.99 -0.07 10.70 16 15 O -0.58 -15.03 15.24 5.54 0.08 -14.95 16 16 C -0.11 -1.89 2.51 -90.39 -0.23 -2.11 16 17 H 0.09 1.58 5.92 -51.93 -0.31 1.28 16 18 C -0.11 -1.64 5.95 -25.35 -0.15 -1.79 16 19 C 0.03 0.34 5.20 -2.18 -0.01 0.32 16 20 N -0.51 -6.93 5.30 -229.71 -1.22 -8.15 16 21 C 0.00 -0.02 4.95 -3.82 -0.02 -0.04 16 22 C 0.46 5.21 3.27 37.16 0.12 5.33 16 23 F -0.17 -2.19 17.24 2.25 0.04 -2.15 16 24 F -0.19 -2.07 17.32 2.25 0.04 -2.03 16 25 F -0.18 -2.19 14.52 2.25 0.03 -2.16 16 26 C 0.05 0.87 5.99 -2.02 -0.01 0.85 16 27 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 28 H 0.08 1.32 6.59 -51.93 -0.34 0.98 16 29 H 0.14 3.05 5.97 -51.93 -0.31 2.74 16 30 H 0.39 5.17 9.10 45.56 0.41 5.59 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.19 7.70 -51.93 -0.40 0.79 16 33 H 0.05 0.71 7.82 -51.93 -0.41 0.31 16 34 H 0.09 1.10 6.72 -51.93 -0.35 0.75 16 35 H 0.12 1.14 8.13 -51.93 -0.42 0.72 16 36 H 0.08 0.88 7.88 -51.93 -0.41 0.47 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.33 6.70 -51.93 -0.35 0.98 16 LS Contribution 325.60 15.07 4.91 4.91 Total: -1.00 -31.57 325.60 -5.39 -36.96 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -3.24 Total: 8.61 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: -0.42 Total: 19.22 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: -0.96 Total: -40.44 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.76 Total: -37.70 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.11 Total: -6.33 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.57 -5.39 -36.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069534.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.115 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds