Wall clock time and date at job start Tue Mar 31 2020 13:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00423 * 2 1 4 4 H 1.48495 * 109.47475 * 240.00311 * 3 2 1 5 5 H 1.48505 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47109 * 119.99969 * 3 2 1 7 7 C 1.38957 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99657 * 200.06898 * 7 2 1 9 9 N 1.37094 * 120.00163 * 20.07839 * 7 2 1 10 10 C 1.46506 * 119.99712 * 18.40731 * 9 7 2 11 11 C 1.50701 * 109.46631 * 263.92488 * 10 9 7 12 12 O 1.20827 * 120.00683 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99849 * 180.02562 * 11 10 9 14 14 C 1.34773 * 120.00258 * 198.40662 * 9 7 2 15 15 O 1.21289 * 120.00154 * 179.97438 * 14 9 7 16 16 C 1.50698 * 119.99770 * 359.97438 * 14 9 7 17 17 H 1.08998 * 110.27336 * 302.09058 * 16 14 9 18 18 C 1.54597 * 110.30958 * 64.28160 * 16 14 9 19 19 C 1.54943 * 102.92089 * 140.87489 * 18 16 14 20 20 N 1.48534 * 103.22385 * 322.58457 * 19 18 16 21 21 C 1.46905 * 110.99768 * 159.72112 * 20 19 18 22 22 C 1.53002 * 109.46787 * 52.60476 * 21 20 19 23 23 F 1.39900 * 109.47378 * 60.00059 * 22 21 20 24 24 F 1.39901 * 109.46853 * 180.02562 * 22 21 20 25 25 F 1.39896 * 109.47291 * 299.99621 * 22 21 20 26 26 C 1.47902 * 105.82213 * 39.21029 * 20 19 18 27 27 H 0.97001 * 119.99489 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47385 * 23.92289 * 10 9 7 29 29 H 1.09000 * 109.46954 * 143.92724 * 10 9 7 30 30 H 0.96698 * 117.00247 * 180.02562 * 13 11 10 31 31 H 1.08999 * 110.72729 * 259.22799 * 18 16 14 32 32 H 1.08997 * 110.72582 * 22.34228 * 18 16 14 33 33 H 1.09004 * 110.66422 * 204.15406 * 19 18 16 34 34 H 1.08993 * 110.66837 * 81.01958 * 19 18 16 35 35 H 1.08995 * 109.47211 * 292.60902 * 21 20 19 36 36 H 1.08998 * 109.47290 * 172.60326 * 21 20 19 37 37 H 1.09001 * 109.91400 * 94.02034 * 26 20 19 38 38 H 1.08993 * 109.91718 * 215.31571 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2833 2.7465 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0397 -1.2320 0.3204 9 7 1.3858 -2.3544 -0.4086 10 6 0.1612 -2.2801 -1.2093 11 6 -1.0382 -2.4055 -0.3055 12 8 -0.8858 -2.5425 0.8852 13 8 -2.2759 -2.3652 -0.8234 14 6 1.8999 -3.5543 -0.0733 15 8 1.3484 -4.5726 -0.4340 16 6 3.1599 -3.6307 0.7498 17 1 3.9724 -3.1071 0.2461 18 6 2.9207 -3.0300 2.1541 19 6 3.7163 -3.9848 3.0794 20 7 3.4946 -5.3180 2.4633 21 6 4.5262 -6.2730 2.8896 22 6 4.6097 -6.2853 4.4173 23 9 3.3731 -6.6664 4.9490 24 9 5.5926 -7.1943 4.8233 25 9 4.9404 -5.0059 4.8766 26 6 3.5458 -5.1001 1.0013 27 1 -0.4849 0.8401 0.0004 28 1 0.1251 -1.3233 -1.7302 29 1 0.1536 -3.0909 -1.9378 30 1 -3.0139 -2.4493 -0.2042 31 1 3.3177 -2.0165 2.2129 32 1 1.8597 -3.0423 2.4033 33 1 3.3174 -3.9585 4.0935 34 1 4.7761 -3.7303 3.0750 35 1 5.4897 -5.9760 2.4755 36 1 4.2687 -7.2699 2.5319 37 1 4.5544 -5.2875 0.6331 38 1 2.8368 -5.7608 0.5024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:07 Heat of formation + Delta-G solvation = -252.644538 kcal Electronic energy + Delta-G solvation = -29216.434703 eV Core-core repulsion = 24451.843123 eV Total energy + Delta-G solvation = -4764.591580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.13029 -47.70343 -47.51371 -39.74700 -38.79103 -37.47104 -35.17042 -34.53508 -32.74788 -31.60967 -28.86937 -28.47516 -27.17246 -24.89748 -23.24760 -21.89244 -21.12969 -20.37595 -19.07544 -18.59133 -18.42343 -17.34833 -17.13142 -16.92925 -16.38106 -15.57995 -15.35058 -14.97093 -14.58596 -14.50806 -14.40781 -14.31021 -14.06132 -14.03163 -14.00880 -13.73415 -13.66853 -13.32057 -12.94344 -12.47342 -12.12152 -11.84613 -11.72951 -11.60244 -11.51239 -11.21981 -10.98604 -10.87656 -10.75279 -10.56339 -10.47831 -10.24329 -10.19273 -9.59550 -9.07756 -8.63355 -8.39707 -8.00916 -6.55601 -4.05681 2.69230 3.04237 3.14383 3.15331 3.57505 3.62501 3.71213 3.78089 3.98693 4.02286 4.26815 4.44387 4.60250 4.84942 4.98467 5.05099 5.11572 5.37399 5.47485 5.57323 5.87237 5.91387 6.05755 6.21994 6.33722 6.39945 6.51326 6.57017 6.66971 6.79602 6.90780 7.02059 7.28608 7.52789 7.65345 8.17360 8.92448 9.19488 9.31599 9.71276 10.52098 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.004028 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.951725 B = 6950.181476 C = 7803.983970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.038 3.962 3 Si 0.924 3.076 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.104 0.896 9 N -0.427 5.427 10 C 0.158 3.842 11 C 0.498 3.502 12 O -0.506 6.506 13 O -0.537 6.537 14 C 0.480 3.520 15 O -0.597 6.597 16 C -0.096 4.096 17 H 0.091 0.909 18 C -0.096 4.096 19 C 0.019 3.981 20 N -0.507 5.507 21 C 0.002 3.998 22 C 0.455 3.545 23 F -0.173 7.173 24 F -0.188 7.188 25 F -0.182 7.182 26 C 0.049 3.951 27 H 0.273 0.727 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.390 0.610 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.045 0.955 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.793 -5.899 2.558 10.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.167 4.167 3 Si 0.750 3.250 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.121 0.879 9 N -0.145 5.145 10 C 0.033 3.967 11 C 0.338 3.662 12 O -0.391 6.391 13 O -0.348 6.348 14 C 0.269 3.731 15 O -0.483 6.483 16 C -0.118 4.118 17 H 0.109 0.891 18 C -0.134 4.134 19 C -0.109 4.109 20 N -0.231 5.231 21 C -0.128 4.128 22 C 0.400 3.600 23 F -0.154 7.154 24 F -0.169 7.169 25 F -0.163 7.163 26 C -0.078 4.078 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.099 0.901 30 H 0.246 0.754 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.137 0.863 37 H 0.063 0.937 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.246 -6.452 2.627 10.052 hybrid contribution 0.647 1.388 0.640 1.660 sum 7.893 -5.064 3.267 9.930 Atomic orbital electron populations 1.69806 1.06145 1.28154 1.46477 1.25213 0.95217 0.99907 0.96335 0.86046 0.79126 0.80803 0.79029 1.19793 1.20907 1.19782 1.19561 0.96558 0.84108 1.45959 0.87858 1.43310 1.20667 1.05292 1.45265 1.20379 0.81172 1.03768 0.91430 1.23654 0.83172 0.70373 0.88991 1.90563 1.85887 1.45185 1.17443 1.84516 1.17377 1.86779 1.46129 1.19881 0.87606 0.83176 0.82450 1.90514 1.64287 1.34756 1.58731 1.21737 0.97449 0.95228 0.97388 0.89114 1.22381 1.02127 0.97816 0.91090 1.23788 0.99048 0.88257 0.99763 1.64995 1.41746 1.08476 1.07933 1.23473 0.98137 1.02815 0.88424 1.20510 0.73636 0.73320 0.92491 1.93218 1.42817 1.90955 1.88404 1.93171 1.63337 1.68002 1.92406 1.93184 1.92511 1.39594 1.91061 1.22958 1.00762 0.97919 0.86183 0.91625 0.86166 0.90130 0.75372 0.89853 0.89586 0.89465 0.93082 0.90397 0.86307 0.93678 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.64 9.20 55.50 0.51 -21.13 16 2 C 0.04 0.90 4.89 -17.47 -0.09 0.82 16 3 Si 0.92 18.39 29.60 -169.99 -5.03 13.36 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.33 -7.80 8.19 -14.93 -0.12 -7.93 16 8 H 0.10 2.23 5.61 -52.49 -0.29 1.94 16 9 N -0.43 -10.13 2.18 -116.09 -0.25 -10.38 16 10 C 0.16 3.65 5.14 -5.19 -0.03 3.63 16 11 C 0.50 11.91 6.47 36.01 0.23 12.15 16 12 O -0.51 -13.78 16.71 -18.75 -0.31 -14.09 16 13 O -0.54 -10.68 13.42 -39.26 -0.53 -11.21 16 14 C 0.48 11.02 6.68 -10.99 -0.07 10.94 16 15 O -0.60 -15.00 14.92 5.55 0.08 -14.92 16 16 C -0.10 -1.78 2.46 -90.41 -0.22 -2.00 16 17 H 0.09 1.53 7.60 -51.93 -0.39 1.13 16 18 C -0.10 -1.76 5.39 -24.87 -0.13 -1.89 16 19 C 0.02 0.29 4.69 -1.89 -0.01 0.28 16 20 N -0.51 -7.81 5.32 -230.45 -1.23 -9.04 16 21 C 0.00 0.02 5.15 -3.82 -0.02 0.00 16 22 C 0.45 5.63 3.07 37.16 0.11 5.74 16 23 F -0.17 -2.46 17.24 2.25 0.04 -2.43 16 24 F -0.19 -2.18 17.32 2.25 0.04 -2.14 16 25 F -0.18 -2.38 13.56 2.25 0.03 -2.35 16 26 C 0.05 0.79 6.30 -2.75 -0.02 0.77 16 27 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 28 H 0.12 2.76 6.45 -51.93 -0.33 2.42 16 29 H 0.08 1.75 7.61 -51.93 -0.40 1.35 16 30 H 0.39 6.08 9.10 45.56 0.41 6.49 16 31 H 0.08 1.47 7.21 -51.93 -0.37 1.10 16 32 H 0.09 1.92 7.85 -51.93 -0.41 1.51 16 33 H 0.09 1.36 6.97 -51.93 -0.36 1.00 16 34 H 0.05 0.69 7.36 -51.93 -0.38 0.31 16 35 H 0.08 0.76 7.81 -51.93 -0.41 0.35 16 36 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.60 7.57 -51.93 -0.39 0.20 16 38 H 0.11 2.05 6.42 -51.93 -0.33 1.71 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -30.33 323.23 -5.36 -35.69 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -3.22 Total: 11.26 kcal Atomic # 6 Polarization: 22.87 SS G_CDS: -0.36 Total: 22.50 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: -0.97 Total: -40.56 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.76 Total: -40.22 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 0.11 Total: -6.91 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.33 -5.36 -35.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.956 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds