Wall clock time and date at job start Tue Mar 31 2020 13:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00423 * 2 1 4 4 H 1.48495 * 109.47475 * 240.00311 * 3 2 1 5 5 H 1.48505 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47109 * 119.99969 * 3 2 1 7 7 C 1.38957 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99657 * 200.06898 * 7 2 1 9 9 N 1.37094 * 120.00163 * 20.07839 * 7 2 1 10 10 C 1.46506 * 119.99712 * 18.40731 * 9 7 2 11 11 C 1.50701 * 109.46631 * 263.92488 * 10 9 7 12 12 O 1.20827 * 120.00683 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99849 * 180.02562 * 11 10 9 14 14 C 1.34773 * 120.00258 * 198.40662 * 9 7 2 15 15 O 1.21289 * 120.00154 * 179.97438 * 14 9 7 16 16 C 1.50698 * 119.99770 * 359.97438 * 14 9 7 17 17 H 1.08998 * 110.27336 * 302.09058 * 16 14 9 18 18 C 1.54597 * 110.30958 * 64.28160 * 16 14 9 19 19 C 1.54943 * 102.92089 * 140.87489 * 18 16 14 20 20 N 1.48534 * 103.22385 * 322.58457 * 19 18 16 21 21 C 1.46905 * 110.99768 * 159.72112 * 20 19 18 22 22 C 1.53002 * 109.46787 * 52.60476 * 21 20 19 23 23 F 1.39900 * 109.47378 * 60.00059 * 22 21 20 24 24 F 1.39901 * 109.46853 * 180.02562 * 22 21 20 25 25 F 1.39896 * 109.47291 * 299.99621 * 22 21 20 26 26 C 1.47902 * 105.82213 * 39.21029 * 20 19 18 27 27 H 0.97001 * 119.99489 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47385 * 23.92289 * 10 9 7 29 29 H 1.09000 * 109.46954 * 143.92724 * 10 9 7 30 30 H 0.96698 * 117.00247 * 180.02562 * 13 11 10 31 31 H 1.08999 * 110.72729 * 259.22799 * 18 16 14 32 32 H 1.08997 * 110.72582 * 22.34228 * 18 16 14 33 33 H 1.09004 * 110.66422 * 204.15406 * 19 18 16 34 34 H 1.08993 * 110.66837 * 81.01958 * 19 18 16 35 35 H 1.08995 * 109.47211 * 292.60902 * 21 20 19 36 36 H 1.08998 * 109.47290 * 172.60326 * 21 20 19 37 37 H 1.09001 * 109.91400 * 94.02034 * 26 20 19 38 38 H 1.08993 * 109.91718 * 215.31571 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2833 2.7465 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0397 -1.2320 0.3204 9 7 1.3858 -2.3544 -0.4086 10 6 0.1612 -2.2801 -1.2093 11 6 -1.0382 -2.4055 -0.3055 12 8 -0.8858 -2.5425 0.8852 13 8 -2.2759 -2.3652 -0.8234 14 6 1.8999 -3.5543 -0.0733 15 8 1.3484 -4.5726 -0.4340 16 6 3.1599 -3.6307 0.7498 17 1 3.9724 -3.1071 0.2461 18 6 2.9207 -3.0300 2.1541 19 6 3.7163 -3.9848 3.0794 20 7 3.4946 -5.3180 2.4633 21 6 4.5262 -6.2730 2.8896 22 6 4.6097 -6.2853 4.4173 23 9 3.3731 -6.6664 4.9490 24 9 5.5926 -7.1943 4.8233 25 9 4.9404 -5.0059 4.8766 26 6 3.5458 -5.1001 1.0013 27 1 -0.4849 0.8401 0.0004 28 1 0.1251 -1.3233 -1.7302 29 1 0.1536 -3.0909 -1.9378 30 1 -3.0139 -2.4493 -0.2042 31 1 3.3177 -2.0165 2.2129 32 1 1.8597 -3.0423 2.4033 33 1 3.3174 -3.9585 4.0935 34 1 4.7761 -3.7303 3.0750 35 1 5.4897 -5.9760 2.4755 36 1 4.2687 -7.2699 2.5319 37 1 4.5544 -5.2875 0.6331 38 1 2.8368 -5.7608 0.5024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:06 Heat of formation + Delta-G solvation = -274.221666 kcal Electronic energy + Delta-G solvation = -29217.370357 eV Core-core repulsion = 24451.843123 eV Total energy + Delta-G solvation = -4765.527234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.10634 -48.65660 -48.53249 -41.42045 -40.46179 -38.99722 -36.96761 -36.40037 -34.03594 -33.40058 -30.34221 -29.80598 -28.62218 -26.68711 -24.33603 -23.43595 -22.40172 -21.99812 -20.78779 -19.58610 -19.41697 -18.87976 -18.71368 -18.44635 -17.96507 -17.34660 -16.63240 -16.47000 -16.16521 -16.12247 -15.78285 -15.48120 -15.37805 -15.17162 -15.10027 -14.94049 -14.72809 -14.67747 -14.45654 -13.75394 -13.67122 -13.50295 -13.25367 -13.20550 -12.84097 -12.60698 -12.48250 -12.28266 -12.21295 -12.14604 -12.13186 -12.03234 -11.65106 -11.46940 -10.92732 -10.38401 -9.84672 -9.53155 -8.34085 -5.89232 1.45879 1.53052 1.61270 1.73663 1.79014 1.88784 2.31442 2.54731 2.59789 2.81827 2.92601 3.08954 3.18524 3.40927 3.65982 3.87603 4.10769 4.19877 4.31600 4.37241 4.37875 4.48180 4.57584 4.70017 4.73422 4.90625 4.97403 5.01536 5.18799 5.31199 5.49755 5.70230 5.76342 5.82195 5.94689 6.36554 7.12017 7.40479 7.53101 7.92765 8.73667 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.004028 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.951725 B = 6950.181476 C = 7803.983970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.005 4.005 3 Si 0.991 3.009 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.343 4.343 8 H 0.120 0.880 9 N -0.438 5.438 10 C 0.154 3.846 11 C 0.500 3.500 12 O -0.547 6.547 13 O -0.525 6.525 14 C 0.466 3.534 15 O -0.627 6.627 16 C -0.095 4.095 17 H 0.115 0.885 18 C -0.091 4.091 19 C 0.032 3.968 20 N -0.532 5.532 21 C 0.004 3.996 22 C 0.456 3.544 23 F -0.188 7.188 24 F -0.181 7.181 25 F -0.186 7.186 26 C 0.058 3.942 27 H 0.270 0.730 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.411 0.589 31 H 0.088 0.912 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.190 -5.803 2.510 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.206 4.206 3 Si 0.815 3.185 4 H -0.186 1.186 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.137 0.863 9 N -0.156 5.156 10 C 0.028 3.972 11 C 0.342 3.658 12 O -0.435 6.435 13 O -0.337 6.337 14 C 0.257 3.743 15 O -0.515 6.515 16 C -0.117 4.117 17 H 0.132 0.868 18 C -0.129 4.129 19 C -0.095 4.095 20 N -0.257 5.257 21 C -0.125 4.125 22 C 0.402 3.598 23 F -0.170 7.170 24 F -0.163 7.163 25 F -0.168 7.168 26 C -0.069 4.069 27 H 0.079 0.921 28 H 0.137 0.863 29 H 0.107 0.893 30 H 0.270 0.730 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.153 0.847 37 H 0.103 0.897 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.638 -6.366 2.568 11.832 hybrid contribution -0.197 1.297 0.658 1.467 sum 9.441 -5.069 3.226 11.190 Atomic orbital electron populations 1.69922 1.07566 1.28442 1.47857 1.26055 0.95827 1.02840 0.95909 0.85015 0.77674 0.76432 0.79404 1.18633 1.21858 1.19197 1.19973 0.97250 0.84055 1.45679 0.86261 1.43574 1.20792 1.05909 1.45353 1.20446 0.81271 1.03880 0.91583 1.23830 0.84294 0.69225 0.88448 1.90543 1.86683 1.47276 1.19046 1.84450 1.16977 1.85977 1.46304 1.20725 0.88870 0.82498 0.82192 1.90482 1.65555 1.35604 1.59850 1.21826 0.95783 0.97499 0.96554 0.86759 1.22229 0.99526 0.99138 0.92025 1.23675 0.99887 0.87547 0.98440 1.64842 1.44324 1.09020 1.07506 1.23592 0.98609 1.02689 0.87626 1.20632 0.73159 0.73165 0.92875 1.93192 1.43952 1.91098 1.88718 1.93185 1.62944 1.67755 1.92401 1.93172 1.92474 1.39932 1.91185 1.22796 1.02069 0.95365 0.86658 0.92059 0.86281 0.89338 0.73038 0.89381 0.94595 0.90116 0.90250 0.87251 0.84682 0.89731 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.35 9.20 21.67 0.20 -45.15 16 2 C 0.00 -0.22 4.89 84.93 0.42 0.19 16 3 Si 0.99 37.07 29.60 68.60 2.03 39.10 16 4 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 5 H -0.29 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 7 C -0.34 -15.86 8.19 84.04 0.69 -15.17 16 8 H 0.12 4.98 5.61 -2.91 -0.02 4.97 16 9 N -0.44 -21.00 2.18 -639.60 -1.39 -22.39 16 10 C 0.15 7.24 5.14 85.63 0.44 7.68 16 11 C 0.50 24.41 6.47 71.24 0.46 24.87 16 12 O -0.55 -30.74 16.71 21.96 0.37 -30.37 16 13 O -0.52 -20.87 13.42 -51.41 -0.69 -21.56 16 14 C 0.47 21.59 6.68 87.66 0.59 22.17 16 15 O -0.63 -32.13 14.92 -3.06 -0.05 -32.18 16 16 C -0.10 -3.41 2.46 -10.66 -0.03 -3.43 16 17 H 0.11 3.53 7.60 -2.39 -0.02 3.51 16 18 C -0.09 -3.28 5.39 31.80 0.17 -3.10 16 19 C 0.03 0.91 4.69 86.65 0.41 1.31 16 20 N -0.53 -15.32 5.32 -883.00 -4.70 -20.02 16 21 C 0.00 0.08 5.15 86.30 0.44 0.53 16 22 C 0.46 10.19 3.07 71.98 0.22 10.41 16 23 F -0.19 -5.16 17.24 44.97 0.78 -4.38 16 24 F -0.18 -3.74 17.32 44.97 0.78 -2.96 16 25 F -0.19 -4.40 13.56 44.97 0.61 -3.79 16 26 C 0.06 1.76 6.30 86.45 0.54 2.31 16 27 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 28 H 0.12 5.56 6.45 -2.39 -0.02 5.55 16 29 H 0.09 3.92 7.61 -2.39 -0.02 3.90 16 30 H 0.41 12.64 9.10 -74.06 -0.67 11.97 16 31 H 0.09 3.02 7.21 -2.39 -0.02 3.00 16 32 H 0.04 1.65 7.85 -2.39 -0.02 1.63 16 33 H 0.08 2.43 6.97 -2.39 -0.02 2.42 16 34 H 0.08 1.85 7.36 -2.39 -0.02 1.83 16 35 H 0.11 1.57 7.81 -2.39 -0.02 1.55 16 36 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.08 1.88 7.57 -2.39 -0.02 1.86 16 38 H 0.08 3.00 6.42 -2.39 -0.02 2.99 16 Total: -1.00 -66.97 323.23 2.75 -64.22 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.47 Total: 31.71 kcal Atomic # 6 Polarization: 43.42 SS G_CDS: 4.35 Total: 47.77 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -5.89 Total: -87.55 kcal Atomic # 8 Polarization: -83.74 SS G_CDS: -0.37 Total: -84.11 kcal Atomic # 9 Polarization: -13.30 SS G_CDS: 2.16 Total: -11.13 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -66.97 2.75 -64.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.001 kcal (2) G-P(sol) polarization free energy of solvation -66.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds