Wall clock time and date at job start Tue Mar 31 2020 13:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86788 * 120.00268 * 2 1 4 4 H 1.48505 * 109.47269 * 239.99911 * 3 2 1 5 5 H 1.48500 * 109.47374 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47172 * 120.00132 * 3 2 1 7 7 C 1.38951 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00121 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00122 * 180.02562 * 9 7 2 11 11 O 1.21284 * 119.99972 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99971 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46989 * 180.02562 * 12 10 9 14 14 C 1.46847 * 111.00234 * 293.95546 * 13 12 10 15 15 C 1.53033 * 109.52821 * 174.15984 * 14 13 12 16 16 H 1.09002 * 109.50232 * 299.23800 * 15 14 13 17 17 C 1.50695 * 109.50498 * 179.15708 * 15 14 13 18 18 O 1.20829 * 120.00425 * 240.07711 * 17 15 14 19 19 O 1.34233 * 120.00004 * 60.08069 * 17 15 14 20 20 C 1.53121 * 109.27414 * 59.17831 * 15 14 13 21 21 C 1.53114 * 109.15992 * 302.34501 * 20 15 14 22 22 H 1.09002 * 109.50460 * 297.71044 * 21 20 15 23 23 C 1.53007 * 109.50296 * 177.59778 * 21 20 15 24 24 F 1.39900 * 109.46782 * 300.20089 * 23 21 20 25 25 F 1.39903 * 109.46900 * 60.19494 * 23 21 20 26 26 F 1.39892 * 109.47234 * 180.19635 * 23 21 20 27 27 C 1.46844 * 111.00001 * 169.74417 * 13 12 10 28 28 H 0.97005 * 119.99951 * 0.02562 * 1 2 3 29 29 H 0.97006 * 120.00169 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47149 * 60.00239 * 12 10 9 31 31 H 1.09001 * 109.47037 * 299.99650 * 12 10 9 32 32 H 1.08999 * 109.46500 * 54.14075 * 14 13 12 33 33 H 1.09004 * 109.45191 * 294.17589 * 14 13 12 34 34 H 0.96699 * 117.00003 * 179.97438 * 19 17 15 35 35 H 1.08999 * 109.52397 * 62.25585 * 20 15 14 36 36 H 1.09007 * 109.51903 * 182.43733 * 20 15 14 37 37 H 1.08993 * 109.46353 * 305.85080 * 27 13 12 38 38 H 1.08999 * 109.46253 * 65.82424 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2099 -3.5580 -0.0001 12 6 1.2434 -4.8630 -0.0011 13 7 2.1979 -5.9796 -0.0004 14 6 2.9640 -6.0180 -1.2526 15 6 4.0441 -7.0980 -1.1587 16 1 4.7228 -6.8636 -0.3386 17 6 4.8164 -7.1510 -2.4515 18 8 4.8375 -8.1694 -3.1015 19 8 5.4811 -6.0668 -2.8812 20 6 3.3815 -8.4544 -0.9021 21 6 2.5511 -8.3732 0.3818 22 1 3.2064 -8.1589 1.2261 23 6 1.8375 -9.7066 0.6137 24 9 0.9987 -9.9815 -0.4717 25 9 2.7859 -10.7273 0.7403 26 9 1.0755 -9.6303 1.7844 27 6 1.5143 -7.2562 0.2432 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3907 -0.0005 30 1 0.6171 -4.9205 -0.8914 31 1 0.6164 -4.9209 0.8886 32 1 3.4333 -5.0487 -1.4211 33 1 2.2936 -6.2458 -2.0814 34 1 5.9624 -6.1492 -3.7159 35 1 2.7324 -8.7072 -1.7404 36 1 4.1497 -9.2198 -0.7913 37 1 0.9308 -7.1864 1.1611 38 1 0.8509 -7.4782 -0.5927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:48 Heat of formation + Delta-G solvation = -280.805828 kcal Electronic energy + Delta-G solvation = -28506.836684 eV Core-core repulsion = 23741.023939 eV Total energy + Delta-G solvation = -4765.812745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.28740 -47.76403 -47.74648 -40.70644 -39.14977 -37.72618 -36.20214 -34.25176 -33.54674 -32.21724 -31.26756 -27.77009 -26.07860 -25.10822 -24.57211 -22.60907 -21.49631 -20.13341 -19.32628 -18.51950 -18.44931 -18.26936 -17.95460 -17.55676 -16.29932 -16.24808 -15.84548 -15.56342 -14.78226 -14.71236 -14.67920 -14.59202 -14.18248 -14.13354 -13.97915 -13.91242 -13.82984 -13.57834 -13.54110 -13.37329 -13.09084 -12.38189 -12.06428 -11.81849 -11.64151 -11.55434 -11.54085 -11.33286 -11.11251 -10.97870 -10.74091 -10.52420 -10.46836 -10.25228 -9.51032 -8.61770 -8.10832 -7.98994 -6.45918 -3.86919 2.07874 2.45852 2.93743 3.17228 3.23874 3.27448 3.46506 3.70334 3.83203 3.86075 4.02131 4.17956 4.48561 4.51272 4.65793 4.75136 4.95741 5.06753 5.11545 5.19486 5.32219 5.37700 5.46554 5.56460 5.62293 5.70915 5.78297 5.94513 6.16305 6.21456 6.42014 6.97758 7.07049 7.51249 7.81624 8.00820 8.55905 9.13226 9.48610 9.99440 10.71546 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003384 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.107454 B = 8272.490170 C = 9661.186231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.441 3.559 11 O -0.576 6.576 12 C 0.047 3.953 13 N -0.508 5.508 14 C 0.058 3.942 15 C -0.071 4.071 16 H 0.126 0.874 17 C 0.491 3.509 18 O -0.521 6.521 19 O -0.503 6.503 20 C -0.105 4.105 21 C -0.129 4.129 22 H 0.129 0.871 23 C 0.459 3.541 24 F -0.182 7.182 25 F -0.182 7.182 26 F -0.181 7.181 27 C 0.053 3.947 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.033 0.967 34 H 0.409 0.591 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 -16.590 -1.320 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.226 3.774 11 O -0.460 6.460 12 C -0.083 4.083 13 N -0.232 5.232 14 C -0.070 4.070 15 C -0.091 4.091 16 H 0.144 0.856 17 C 0.334 3.666 18 O -0.410 6.410 19 O -0.314 6.314 20 C -0.143 4.143 21 C -0.149 4.149 22 H 0.147 0.853 23 C 0.405 3.595 24 F -0.164 7.164 25 F -0.163 7.163 26 F -0.162 7.162 27 C -0.076 4.076 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.142 0.858 33 H 0.051 0.949 34 H 0.267 0.733 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.397 -16.594 -0.736 16.954 hybrid contribution -0.639 0.365 -1.101 1.324 sum 2.758 -16.228 -1.837 16.563 Atomic orbital electron populations 1.69600 1.05963 1.28352 1.50281 1.25261 0.95618 0.99752 0.97188 0.85918 0.78775 0.80436 0.79103 1.19889 1.20998 1.19855 1.19652 0.93358 0.82124 1.47827 0.87855 1.41850 1.09227 1.04563 1.64097 1.19632 0.88416 0.84428 0.84898 1.90496 1.13506 1.86763 1.55249 1.21868 0.93663 0.90661 1.02156 1.61368 1.25543 1.01046 1.35212 1.22275 0.94177 1.00807 0.89729 1.20918 0.97886 0.96640 0.93633 0.85628 1.23242 0.76327 0.80246 0.86833 1.90711 1.60624 1.32572 1.57072 1.84637 1.61955 1.40737 1.44080 1.21539 0.99856 0.96832 0.96049 1.22447 0.99216 0.90082 1.03156 0.85288 1.20433 0.77544 0.87657 0.73908 1.93178 1.73056 1.94846 1.55272 1.93185 1.64437 1.63018 1.95709 1.93191 1.77185 1.96527 1.49329 1.22125 0.93973 0.88759 1.02707 0.91766 0.77454 0.92937 0.88714 0.85772 0.94883 0.73282 0.89761 0.89454 0.88918 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.78 13.05 55.50 0.72 -23.06 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.01 9.68 -14.93 -0.14 -8.16 16 8 H 0.10 2.89 7.16 -52.48 -0.38 2.51 16 9 N -0.56 -13.44 5.29 -10.96 -0.06 -13.50 16 10 C 0.44 9.61 7.46 -10.98 -0.08 9.53 16 11 O -0.58 -14.27 13.92 5.55 0.08 -14.19 16 12 C 0.05 0.76 5.45 -4.97 -0.03 0.73 16 13 N -0.51 -7.34 4.39 -236.12 -1.04 -8.38 16 14 C 0.06 0.83 4.32 -3.84 -0.02 0.82 16 15 C -0.07 -0.87 2.79 -91.69 -0.26 -1.12 16 16 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 17 C 0.49 6.19 7.63 36.00 0.27 6.46 16 18 O -0.52 -7.51 16.74 -18.75 -0.31 -7.82 16 19 O -0.50 -5.75 13.35 -39.27 -0.52 -6.27 16 20 C -0.11 -1.13 3.62 -26.61 -0.10 -1.22 16 21 C -0.13 -1.30 2.33 -90.54 -0.21 -1.51 16 22 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 23 C 0.46 4.73 2.69 37.16 0.10 4.83 16 24 F -0.18 -2.02 16.22 2.25 0.04 -1.98 16 25 F -0.18 -1.95 16.86 2.25 0.04 -1.91 16 26 F -0.18 -1.94 16.82 2.25 0.04 -1.90 16 27 C 0.05 0.60 4.50 -3.84 -0.02 0.58 16 28 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.39 9.01 7.90 -40.82 -0.32 8.68 16 30 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 31 H 0.09 1.34 7.98 -51.93 -0.41 0.93 16 32 H 0.12 2.23 5.79 -51.93 -0.30 1.93 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.41 2.72 9.10 45.56 0.41 3.13 16 35 H 0.08 0.95 7.64 -51.93 -0.40 0.56 16 36 H 0.09 0.88 7.88 -51.93 -0.41 0.47 16 37 H 0.09 0.96 7.70 -51.93 -0.40 0.56 16 38 H 0.05 0.52 7.78 -51.93 -0.40 0.12 16 LS Contribution 333.26 15.07 5.02 5.02 Total: -1.00 -31.34 333.26 -5.03 -36.36 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -3.43 Total: 10.76 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -0.57 Total: 11.45 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.37 Total: -44.93 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.76 Total: -28.29 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.34 -5.03 -36.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -244.441 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds