Wall clock time and date at job start Tue Mar 31 2020 13:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86788 * 120.00268 * 2 1 4 4 H 1.48505 * 109.47269 * 239.99911 * 3 2 1 5 5 H 1.48500 * 109.47374 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47172 * 120.00132 * 3 2 1 7 7 C 1.38951 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00121 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00122 * 180.02562 * 9 7 2 11 11 O 1.21284 * 119.99972 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99971 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46989 * 180.02562 * 12 10 9 14 14 C 1.46847 * 111.00234 * 293.95546 * 13 12 10 15 15 C 1.53033 * 109.52821 * 174.15984 * 14 13 12 16 16 H 1.09002 * 109.50232 * 299.23800 * 15 14 13 17 17 C 1.50695 * 109.50498 * 179.15708 * 15 14 13 18 18 O 1.20829 * 120.00425 * 240.07711 * 17 15 14 19 19 O 1.34233 * 120.00004 * 60.08069 * 17 15 14 20 20 C 1.53121 * 109.27414 * 59.17831 * 15 14 13 21 21 C 1.53114 * 109.15992 * 302.34501 * 20 15 14 22 22 H 1.09002 * 109.50460 * 297.71044 * 21 20 15 23 23 C 1.53007 * 109.50296 * 177.59778 * 21 20 15 24 24 F 1.39900 * 109.46782 * 300.20089 * 23 21 20 25 25 F 1.39903 * 109.46900 * 60.19494 * 23 21 20 26 26 F 1.39892 * 109.47234 * 180.19635 * 23 21 20 27 27 C 1.46844 * 111.00001 * 169.74417 * 13 12 10 28 28 H 0.97005 * 119.99951 * 0.02562 * 1 2 3 29 29 H 0.97006 * 120.00169 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47149 * 60.00239 * 12 10 9 31 31 H 1.09001 * 109.47037 * 299.99650 * 12 10 9 32 32 H 1.08999 * 109.46500 * 54.14075 * 14 13 12 33 33 H 1.09004 * 109.45191 * 294.17589 * 14 13 12 34 34 H 0.96699 * 117.00003 * 179.97438 * 19 17 15 35 35 H 1.08999 * 109.52397 * 62.25585 * 20 15 14 36 36 H 1.09007 * 109.51903 * 182.43733 * 20 15 14 37 37 H 1.08993 * 109.46353 * 305.85080 * 27 13 12 38 38 H 1.08999 * 109.46253 * 65.82424 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2099 -3.5580 -0.0001 12 6 1.2434 -4.8630 -0.0011 13 7 2.1979 -5.9796 -0.0004 14 6 2.9640 -6.0180 -1.2526 15 6 4.0441 -7.0980 -1.1587 16 1 4.7228 -6.8636 -0.3386 17 6 4.8164 -7.1510 -2.4515 18 8 4.8375 -8.1694 -3.1015 19 8 5.4811 -6.0668 -2.8812 20 6 3.3815 -8.4544 -0.9021 21 6 2.5511 -8.3732 0.3818 22 1 3.2064 -8.1589 1.2261 23 6 1.8375 -9.7066 0.6137 24 9 0.9987 -9.9815 -0.4717 25 9 2.7859 -10.7273 0.7403 26 9 1.0755 -9.6303 1.7844 27 6 1.5143 -7.2562 0.2432 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3907 -0.0005 30 1 0.6171 -4.9205 -0.8914 31 1 0.6164 -4.9209 0.8886 32 1 3.4333 -5.0487 -1.4211 33 1 2.2936 -6.2458 -2.0814 34 1 5.9624 -6.1492 -3.7159 35 1 2.7324 -8.7072 -1.7404 36 1 4.1497 -9.2198 -0.7913 37 1 0.9308 -7.1864 1.1611 38 1 0.8509 -7.4782 -0.5927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:48 Heat of formation + Delta-G solvation = -303.814935 kcal Electronic energy + Delta-G solvation = -28507.834434 eV Core-core repulsion = 23741.023939 eV Total energy + Delta-G solvation = -4766.810495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.11427 -48.58929 -48.57853 -41.72714 -40.47089 -39.17466 -37.20177 -35.97163 -34.84162 -33.28481 -33.08605 -29.16106 -26.99320 -26.55772 -25.86708 -23.75624 -22.44441 -21.06462 -20.99274 -19.85869 -19.36599 -19.31395 -19.16486 -18.57978 -17.74642 -17.26203 -17.00045 -16.59618 -16.49688 -15.95773 -15.81678 -15.56760 -15.51950 -15.14895 -15.03544 -14.92369 -14.76611 -14.72712 -14.67379 -14.37325 -14.17888 -13.82412 -13.45434 -13.09964 -13.03277 -12.75199 -12.70816 -12.54098 -12.38300 -12.21546 -12.10803 -11.98564 -11.86013 -11.55073 -11.37972 -10.24349 -9.94833 -9.35820 -8.42079 -5.89770 1.06927 1.42753 1.45034 1.54807 1.60454 2.06405 2.11198 2.30164 2.53263 2.83088 3.04352 3.09488 3.25648 3.34592 3.58643 3.64078 3.76552 3.88642 4.08691 4.18783 4.31767 4.37709 4.43551 4.52007 4.58626 4.60439 4.66165 4.78731 4.97056 5.04263 5.45882 5.54535 5.76516 5.96383 6.09671 6.65454 6.94675 7.18228 7.62366 8.17544 8.75054 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003384 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.107454 B = 8272.490170 C = 9661.186231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.989 3.011 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.328 4.328 8 H 0.081 0.919 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.608 6.608 12 C 0.058 3.942 13 N -0.519 5.519 14 C 0.063 3.937 15 C -0.066 4.066 16 H 0.128 0.872 17 C 0.496 3.504 18 O -0.540 6.540 19 O -0.511 6.511 20 C -0.099 4.099 21 C -0.122 4.122 22 H 0.140 0.860 23 C 0.466 3.534 24 F -0.186 7.186 25 F -0.183 7.183 26 F -0.182 7.182 27 C 0.053 3.947 28 H 0.276 0.724 29 H 0.396 0.604 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.428 0.572 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.309 -17.446 -1.054 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.458 4.458 8 H 0.099 0.901 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.493 6.493 12 C -0.073 4.073 13 N -0.243 5.243 14 C -0.065 4.065 15 C -0.086 4.086 16 H 0.146 0.854 17 C 0.339 3.661 18 O -0.430 6.430 19 O -0.324 6.324 20 C -0.136 4.136 21 C -0.142 4.142 22 H 0.158 0.842 23 C 0.411 3.589 24 F -0.167 7.167 25 F -0.165 7.165 26 F -0.163 7.163 27 C -0.074 4.074 28 H 0.085 0.915 29 H 0.229 0.771 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.289 0.711 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.076 -17.466 -0.482 17.742 hybrid contribution -0.486 0.570 -1.208 1.421 sum 2.590 -16.896 -1.689 17.177 Atomic orbital electron populations 1.69663 1.06802 1.29196 1.50637 1.25969 0.96452 1.02272 0.96515 0.85042 0.77765 0.76960 0.78923 1.19745 1.19862 1.19752 1.19613 0.92725 0.83920 1.49555 0.90095 1.41922 1.09326 1.04684 1.65326 1.20667 0.88354 0.85758 0.82278 1.90480 1.15368 1.87634 1.55856 1.21752 0.93362 0.87930 1.04243 1.61298 1.25810 1.02020 1.35215 1.22079 0.94728 0.99596 0.90142 1.20869 0.97310 0.96767 0.93641 0.85418 1.23255 0.76071 0.80022 0.86710 1.90704 1.61441 1.33229 1.57653 1.84609 1.61963 1.40355 1.45450 1.21485 0.99988 0.95960 0.96204 1.22386 0.98938 0.89597 1.03260 0.84177 1.20340 0.77344 0.87501 0.73717 1.93176 1.73196 1.94880 1.55489 1.93186 1.64489 1.63091 1.95704 1.93194 1.77212 1.96519 1.49379 1.22196 0.94271 0.87255 1.03722 0.91455 0.77060 0.91001 0.86239 0.89551 0.94289 0.71050 0.90147 0.88587 0.87514 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.55 13.05 21.66 0.28 -48.27 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 41.87 29.55 68.60 2.03 43.90 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.33 -17.89 9.68 84.04 0.81 -17.07 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.57 -27.86 5.29 -306.98 -1.62 -29.48 16 10 C 0.44 19.31 7.46 87.66 0.65 19.96 16 11 O -0.61 -30.68 13.92 -3.04 -0.04 -30.73 16 12 C 0.06 1.75 5.45 85.56 0.47 2.22 16 13 N -0.52 -14.15 4.39 -900.94 -3.96 -18.10 16 14 C 0.06 1.76 4.32 86.32 0.37 2.13 16 15 C -0.07 -1.54 2.79 -11.49 -0.03 -1.58 16 16 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 17 C 0.50 12.11 7.63 71.23 0.54 12.65 16 18 O -0.54 -15.00 16.74 21.96 0.37 -14.63 16 19 O -0.51 -11.40 13.35 -51.44 -0.69 -12.09 16 20 C -0.10 -1.93 3.62 30.67 0.11 -1.81 16 21 C -0.12 -2.17 2.33 -10.74 -0.02 -2.19 16 22 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 23 C 0.47 8.47 2.69 71.98 0.19 8.66 16 24 F -0.19 -3.69 16.22 44.97 0.73 -2.96 16 25 F -0.18 -3.51 16.86 44.97 0.76 -2.76 16 26 F -0.18 -3.44 16.82 44.97 0.76 -2.68 16 27 C 0.05 1.06 4.50 86.33 0.39 1.45 16 28 H 0.28 13.73 8.31 -92.70 -0.77 12.96 16 29 H 0.40 18.26 7.90 -92.70 -0.73 17.53 16 30 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 31 H 0.12 3.07 7.98 -2.39 -0.02 3.06 16 32 H 0.09 3.14 5.79 -2.39 -0.01 3.13 16 33 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.43 5.36 9.10 -74.06 -0.67 4.69 16 35 H 0.08 1.66 7.64 -2.39 -0.02 1.64 16 36 H 0.10 1.74 7.88 -2.38 -0.02 1.72 16 37 H 0.11 1.86 7.70 -2.39 -0.02 1.84 16 38 H 0.06 1.07 7.78 -2.39 -0.02 1.05 16 Total: -1.00 -67.24 333.26 2.30 -64.94 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.26 Total: 28.62 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: 3.95 Total: 24.23 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -5.30 Total: -95.85 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -0.36 Total: -57.45 kcal Atomic # 9 Polarization: -10.64 SS G_CDS: 2.24 Total: -8.40 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -67.24 2.30 -64.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -238.874 kcal (2) G-P(sol) polarization free energy of solvation -67.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -306.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -303.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds