Wall clock time and date at job start Tue Mar 31 2020 14:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42900 * 109.47334 * 2 1 4 4 C 1.53001 * 109.47077 * 120.00089 * 2 1 3 5 5 N 1.46502 * 109.46984 * 304.99702 * 4 2 1 6 6 C 1.34771 * 120.00018 * 179.97438 * 5 4 2 7 7 O 1.21590 * 119.99877 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00061 * 180.02562 * 6 5 4 9 9 C 1.40027 * 119.99929 * 175.50059 * 8 6 5 10 10 C 1.38914 * 119.99647 * 214.85217 * 9 8 6 11 11 C 1.38011 * 119.99558 * 179.81395 * 10 9 8 12 12 C 1.38901 * 120.00152 * 0.43142 * 11 10 9 13 13 O 1.35788 * 119.99861 * 179.77061 * 12 11 10 14 14 C 1.34818 * 116.99919 * 185.36766 * 13 12 11 15 15 H 1.08002 * 119.99705 * 354.97016 * 14 13 12 16 16 C 1.38625 * 119.99928 * 174.96170 * 14 13 12 17 17 N 1.31571 * 120.00208 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 120.00015 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46907 * 89.99674 * 18 16 14 20 20 H 1.48498 * 109.47029 * 209.99892 * 18 16 14 21 21 H 1.48502 * 109.47023 * 329.99622 * 18 16 14 22 22 C 1.38897 * 120.00096 * 359.79851 * 12 11 10 23 23 C 1.38011 * 120.00549 * 359.97438 * 22 12 11 24 24 C 1.50700 * 109.46856 * 239.99715 * 2 1 3 25 25 O 1.20825 * 120.00056 * 265.00120 * 24 2 1 26 26 O 1.34234 * 119.99943 * 85.00194 * 24 2 1 27 27 H 1.08998 * 109.46971 * 300.00425 * 1 2 3 28 28 H 1.09000 * 109.47076 * 59.99868 * 1 2 3 29 29 H 1.08995 * 109.47204 * 179.97438 * 1 2 3 30 30 H 0.96694 * 114.00141 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46879 * 184.99743 * 4 2 1 32 32 H 1.09003 * 109.47234 * 64.99595 * 4 2 1 33 33 H 0.97006 * 119.99962 * 0.02562 * 5 4 2 34 34 H 0.97000 * 120.00254 * 355.49091 * 8 6 5 35 35 H 1.07994 * 120.00448 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.99756 * 180.18656 * 11 10 9 37 37 H 0.96999 * 120.00570 * 180.02562 * 17 16 14 38 38 H 1.08011 * 119.99775 * 179.97438 * 22 12 11 39 39 H 1.07999 * 120.00401 * 179.97438 * 23 22 12 40 40 H 0.96696 * 116.99941 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.4559 -0.1036 2.4424 6 6 1.7640 -0.5774 3.6659 7 8 2.5271 -1.5172 3.7795 8 7 1.2262 -0.0095 4.7635 9 6 1.4710 -0.5596 6.0277 10 6 0.4820 -0.5272 7.0026 11 6 0.7219 -1.0728 8.2474 12 6 1.9554 -1.6463 8.5283 13 8 2.1930 -2.1789 9.7545 14 6 3.4438 -2.6189 9.9988 15 1 4.1815 -2.6140 9.2101 16 6 3.7828 -3.0773 11.2623 17 7 5.0033 -3.5072 11.5007 18 14 2.5065 -3.0861 12.6264 19 1 1.7848 -4.3840 12.6206 20 1 3.1808 -2.9004 13.9363 21 1 1.5393 -1.9809 12.4064 22 6 2.9460 -1.6744 7.5550 23 6 2.7046 -1.1331 6.3087 24 6 2.0323 -0.7105 -1.2304 25 8 2.3197 -1.8828 -1.1762 26 8 2.1605 -0.0409 -2.3868 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.9704 1.4236 -0.0004 31 1 3.1264 -0.6444 1.2951 32 1 1.7516 -1.7715 1.2056 33 1 0.8468 0.6459 2.3517 34 1 0.6698 0.7804 4.6778 35 1 -0.4756 -0.0774 6.7857 36 1 -0.0481 -1.0502 9.0044 37 1 5.2405 -3.8283 12.3847 38 1 3.9053 -2.1200 7.7737 39 1 3.4750 -1.1546 5.5521 40 1 2.4862 -0.5391 -3.1488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603256602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:31 Heat of formation + Delta-G solvation = -153.469645 kcal Electronic energy + Delta-G solvation = -26421.526894 eV Core-core repulsion = 22203.092601 eV Total energy + Delta-G solvation = -4218.434293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32300 -40.34891 -38.98552 -38.14157 -36.80719 -36.68351 -34.64120 -34.00567 -32.30895 -31.80200 -30.24806 -28.40646 -27.03830 -25.28402 -24.73898 -22.53274 -21.63172 -21.06199 -20.56142 -19.19898 -18.76651 -18.04483 -17.84276 -17.47849 -16.82776 -16.50084 -15.77534 -15.72784 -15.06516 -14.88173 -14.79044 -14.38969 -14.09418 -13.91620 -13.78263 -13.73744 -13.16803 -13.12024 -12.74307 -12.68916 -12.42549 -12.37031 -12.23831 -12.12923 -11.71303 -11.60805 -11.42359 -10.93750 -10.72707 -10.69567 -10.27905 -9.99290 -9.68702 -9.32955 -9.22957 -8.73288 -8.25004 -7.02345 -6.37506 -4.03390 1.47403 1.98694 2.10156 2.19713 2.77558 3.20687 3.26465 3.28351 3.36045 3.42262 3.81078 4.11896 4.17170 4.26655 4.49814 4.52883 4.88260 4.97210 5.03875 5.14080 5.16251 5.32848 5.43913 5.57863 5.67225 5.85523 6.09069 6.10024 6.12879 6.25733 6.57879 6.65320 6.72932 6.85860 7.10486 7.16326 7.26770 7.34596 7.62415 7.83441 7.95589 8.06796 8.58861 8.97518 9.59573 10.70172 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.032888 B = 0.002098 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.170797 B =13339.848006 C =13850.464770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.141 3.859 3 O -0.533 6.533 4 C 0.125 3.875 5 N -0.742 5.742 6 C 0.701 3.299 7 O -0.570 6.570 8 N -0.674 5.674 9 C 0.061 3.939 10 C -0.097 4.097 11 C -0.177 4.177 12 C 0.150 3.850 13 O -0.218 6.218 14 C -0.388 4.388 15 H 0.107 0.893 16 C 0.062 3.938 17 N -0.880 5.880 18 Si 0.906 3.094 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.206 4.206 23 C -0.066 4.066 24 C 0.458 3.542 25 O -0.497 6.497 26 O -0.503 6.503 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.388 0.612 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.399 0.601 34 H 0.399 0.601 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.279 0.721 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.793 11.535 -25.178 29.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.097 3.903 3 O -0.339 6.339 4 C -0.001 4.001 5 N -0.401 5.401 6 C 0.401 3.599 7 O -0.446 6.446 8 N -0.321 5.321 9 C -0.032 4.032 10 C -0.118 4.118 11 C -0.197 4.197 12 C 0.098 3.902 13 O -0.123 6.123 14 C -0.463 4.463 15 H 0.124 0.876 16 C -0.141 4.141 17 N -0.518 5.518 18 Si 0.732 3.268 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.184 1.184 22 C -0.226 4.226 23 C -0.086 4.086 24 C 0.297 3.703 25 O -0.384 6.384 26 O -0.315 6.315 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.237 0.763 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.234 0.766 34 H 0.233 0.767 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -9.765 10.544 -24.386 28.306 hybrid contribution 0.027 0.117 -0.146 0.189 sum -9.738 10.661 -24.532 28.465 Atomic orbital electron populations 1.21835 0.88980 1.04262 1.04893 1.21249 0.97679 0.82932 0.88399 1.86630 1.28025 1.22857 1.96438 1.21570 0.98815 0.98101 0.81584 1.44862 1.52652 1.38543 1.04015 1.15870 0.81464 0.82445 0.80091 1.90974 1.38576 1.29895 1.85167 1.42254 1.54262 1.31495 1.04086 1.17085 0.95017 1.07141 0.83918 1.20313 0.96862 1.01660 0.92941 1.19962 0.96562 1.05767 0.97423 1.19147 0.93437 0.91901 0.85711 1.83565 1.32636 1.68166 1.27898 1.20778 0.85043 1.41548 0.98960 0.87576 1.24469 0.96562 0.95659 0.97413 1.69656 1.17726 1.40881 1.23542 0.86170 0.81131 0.79622 0.79895 1.19923 1.20885 1.18354 1.21234 1.01345 1.06753 0.93234 1.20940 0.95090 0.96650 0.95936 1.24151 0.74652 0.86025 0.85446 1.90814 1.44988 1.17297 1.85256 1.84583 1.78902 1.47334 1.20656 0.89673 0.90180 0.89676 0.76256 0.90416 0.88816 0.76587 0.76710 0.86605 0.86082 0.91094 0.84607 0.85323 0.72887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.60 37.16 0.32 -0.40 16 2 C 0.14 0.89 1.02 -91.77 -0.09 0.80 16 3 O -0.53 -2.98 12.72 -49.11 -0.62 -3.61 16 4 C 0.12 1.10 4.45 -4.04 -0.02 1.09 16 5 N -0.74 -6.73 5.19 -65.22 -0.34 -7.06 16 6 C 0.70 9.71 8.41 -86.92 -0.73 8.98 16 7 O -0.57 -10.65 13.78 5.29 0.07 -10.58 16 8 N -0.67 -8.68 5.35 -14.18 -0.08 -8.76 16 9 C 0.06 1.05 6.30 -83.61 -0.53 0.52 16 10 C -0.10 -1.59 9.96 -39.41 -0.39 -1.98 16 11 C -0.18 -3.44 9.98 -39.42 -0.39 -3.83 16 12 C 0.15 3.50 6.65 -39.09 -0.26 3.24 16 13 O -0.22 -5.78 8.58 -0.03 0.00 -5.78 16 14 C -0.39 -11.07 9.94 30.88 0.31 -10.76 16 15 H 0.11 3.12 5.43 -52.49 -0.28 2.83 16 16 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 17 N -0.88 -25.75 13.96 55.48 0.77 -24.98 16 18 Si 0.91 21.81 28.62 -169.99 -4.86 16.95 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.26 -6.22 7.11 56.52 0.40 -5.81 16 22 C -0.21 -4.66 9.16 -39.42 -0.36 -5.02 16 23 C -0.07 -1.33 8.69 -39.42 -0.34 -1.67 16 24 C 0.46 3.32 7.17 36.01 0.26 3.58 16 25 O -0.50 -5.27 16.74 -18.75 -0.31 -5.59 16 26 O -0.50 -2.53 13.18 -44.44 -0.59 -3.11 16 27 H 0.08 0.35 6.57 -51.93 -0.34 0.01 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.39 1.18 9.04 45.56 0.41 1.59 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.01 7.69 -51.93 -0.40 0.61 16 33 H 0.40 2.46 7.01 -40.82 -0.29 2.17 16 34 H 0.40 3.50 8.84 -40.82 -0.36 3.14 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.14 3.25 5.63 -52.48 -0.30 2.95 16 39 H 0.13 2.62 6.22 -52.49 -0.33 2.30 16 40 H 0.41 0.45 9.10 45.56 0.41 0.86 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -36.69 349.64 -5.73 -42.43 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -2.72 Total: 8.61 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.33 Total: -3.79 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.36 Total: -40.80 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -1.45 Total: -28.66 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.69 -5.73 -42.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603256602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.044 kcal (2) G-P(sol) polarization free energy of solvation -36.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds