Wall clock time and date at job start Tue Mar 31 2020 14:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42900 * 109.47334 * 2 1 4 4 C 1.53001 * 109.47077 * 120.00089 * 2 1 3 5 5 N 1.46502 * 109.46984 * 304.99702 * 4 2 1 6 6 C 1.34771 * 120.00018 * 179.97438 * 5 4 2 7 7 O 1.21590 * 119.99877 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00061 * 180.02562 * 6 5 4 9 9 C 1.40027 * 119.99929 * 175.50059 * 8 6 5 10 10 C 1.38914 * 119.99647 * 214.85217 * 9 8 6 11 11 C 1.38011 * 119.99558 * 179.81395 * 10 9 8 12 12 C 1.38901 * 120.00152 * 0.43142 * 11 10 9 13 13 O 1.35788 * 119.99861 * 179.77061 * 12 11 10 14 14 C 1.34818 * 116.99919 * 185.36766 * 13 12 11 15 15 H 1.08002 * 119.99705 * 354.97016 * 14 13 12 16 16 C 1.38625 * 119.99928 * 174.96170 * 14 13 12 17 17 N 1.31571 * 120.00208 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 120.00015 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46907 * 89.99674 * 18 16 14 20 20 H 1.48498 * 109.47029 * 209.99892 * 18 16 14 21 21 H 1.48502 * 109.47023 * 329.99622 * 18 16 14 22 22 C 1.38897 * 120.00096 * 359.79851 * 12 11 10 23 23 C 1.38011 * 120.00549 * 359.97438 * 22 12 11 24 24 C 1.50700 * 109.46856 * 239.99715 * 2 1 3 25 25 O 1.20825 * 120.00056 * 265.00120 * 24 2 1 26 26 O 1.34234 * 119.99943 * 85.00194 * 24 2 1 27 27 H 1.08998 * 109.46971 * 300.00425 * 1 2 3 28 28 H 1.09000 * 109.47076 * 59.99868 * 1 2 3 29 29 H 1.08995 * 109.47204 * 179.97438 * 1 2 3 30 30 H 0.96694 * 114.00141 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46879 * 184.99743 * 4 2 1 32 32 H 1.09003 * 109.47234 * 64.99595 * 4 2 1 33 33 H 0.97006 * 119.99962 * 0.02562 * 5 4 2 34 34 H 0.97000 * 120.00254 * 355.49091 * 8 6 5 35 35 H 1.07994 * 120.00448 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.99756 * 180.18656 * 11 10 9 37 37 H 0.96999 * 120.00570 * 180.02562 * 17 16 14 38 38 H 1.08011 * 119.99775 * 179.97438 * 22 12 11 39 39 H 1.07999 * 120.00401 * 179.97438 * 23 22 12 40 40 H 0.96696 * 116.99941 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.4559 -0.1036 2.4424 6 6 1.7640 -0.5774 3.6659 7 8 2.5271 -1.5172 3.7795 8 7 1.2262 -0.0095 4.7635 9 6 1.4710 -0.5596 6.0277 10 6 0.4820 -0.5272 7.0026 11 6 0.7219 -1.0728 8.2474 12 6 1.9554 -1.6463 8.5283 13 8 2.1930 -2.1789 9.7545 14 6 3.4438 -2.6189 9.9988 15 1 4.1815 -2.6140 9.2101 16 6 3.7828 -3.0773 11.2623 17 7 5.0033 -3.5072 11.5007 18 14 2.5065 -3.0861 12.6264 19 1 1.7848 -4.3840 12.6206 20 1 3.1808 -2.9004 13.9363 21 1 1.5393 -1.9809 12.4064 22 6 2.9460 -1.6744 7.5550 23 6 2.7046 -1.1331 6.3087 24 6 2.0323 -0.7105 -1.2304 25 8 2.3197 -1.8828 -1.1762 26 8 2.1605 -0.0409 -2.3868 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.9704 1.4236 -0.0004 31 1 3.1264 -0.6444 1.2951 32 1 1.7516 -1.7715 1.2056 33 1 0.8468 0.6459 2.3517 34 1 0.6698 0.7804 4.6778 35 1 -0.4756 -0.0774 6.7857 36 1 -0.0481 -1.0502 9.0044 37 1 5.2405 -3.8283 12.3847 38 1 3.9053 -2.1200 7.7737 39 1 3.4750 -1.1546 5.5521 40 1 2.4862 -0.5391 -3.1488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603256602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:30 Heat of formation + Delta-G solvation = -185.073387 kcal Electronic energy + Delta-G solvation = -26422.897335 eV Core-core repulsion = 22203.092601 eV Total energy + Delta-G solvation = -4219.804734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.00880 -41.50199 -40.56416 -38.93163 -38.16426 -37.32216 -35.57927 -35.35711 -34.34397 -32.45577 -31.84761 -29.80280 -27.90478 -27.01510 -25.59681 -24.04359 -23.06541 -21.88352 -21.60253 -20.17910 -19.73349 -19.47174 -19.12668 -18.61812 -18.19169 -17.25624 -16.85414 -16.52190 -16.34140 -16.03946 -15.77900 -15.66315 -15.50844 -15.39624 -15.19241 -14.86822 -14.42313 -14.19177 -14.12577 -13.77286 -13.53694 -13.35431 -13.26929 -13.14638 -12.91264 -12.72393 -12.68464 -12.45117 -12.01674 -11.97886 -11.53176 -11.38738 -11.25472 -11.00131 -10.65449 -10.24800 -9.83184 -8.62681 -8.47641 -6.19987 0.52066 0.56240 0.90259 1.30191 1.33868 1.39176 1.54930 1.98584 2.05544 2.30624 2.79254 2.90219 3.05553 3.18921 3.20251 3.25421 3.59985 4.06537 4.10324 4.13364 4.39430 4.49292 4.50733 4.64744 4.66077 4.70595 4.74808 5.06374 5.07093 5.18779 5.25986 5.38469 5.43585 5.51116 5.63526 5.77183 5.93263 5.96260 6.23731 6.39054 6.83791 6.86018 6.99928 7.49159 7.59375 8.64276 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.032888 B = 0.002098 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.170797 B =13339.848006 C =13850.464770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.153 3.847 3 O -0.532 6.532 4 C 0.124 3.876 5 N -0.714 5.714 6 C 0.698 3.302 7 O -0.621 6.621 8 N -0.658 5.658 9 C 0.090 3.910 10 C -0.077 4.077 11 C -0.166 4.166 12 C 0.110 3.890 13 O -0.241 6.241 14 C -0.399 4.399 15 H 0.075 0.925 16 C 0.005 3.995 17 N -0.927 5.927 18 Si 0.977 3.023 19 H -0.267 1.267 20 H -0.269 1.269 21 H -0.256 1.256 22 C -0.223 4.223 23 C -0.082 4.082 24 C 0.465 3.535 25 O -0.537 6.537 26 O -0.496 6.496 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.400 0.600 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.418 0.582 34 H 0.426 0.574 35 H 0.176 0.824 36 H 0.145 0.855 37 H 0.284 0.716 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.576 14.207 -26.812 33.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.110 3.890 3 O -0.340 6.340 4 C -0.001 4.001 5 N -0.373 5.373 6 C 0.398 3.602 7 O -0.501 6.501 8 N -0.308 5.308 9 C -0.005 4.005 10 C -0.097 4.097 11 C -0.186 4.186 12 C 0.061 3.939 13 O -0.148 6.148 14 C -0.475 4.475 15 H 0.092 0.908 16 C -0.192 4.192 17 N -0.568 5.568 18 Si 0.798 3.202 19 H -0.192 1.192 20 H -0.194 1.194 21 H -0.180 1.180 22 C -0.243 4.243 23 C -0.102 4.102 24 C 0.306 3.694 25 O -0.427 6.427 26 O -0.310 6.310 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.251 0.749 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.257 0.743 34 H 0.265 0.735 35 H 0.193 0.807 36 H 0.163 0.837 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -13.595 13.318 -26.133 32.329 hybrid contribution 1.152 -0.532 -0.095 1.273 sum -12.443 12.786 -26.228 31.721 Atomic orbital electron populations 1.21913 0.87601 1.04568 1.06112 1.21034 0.98507 0.82781 0.86687 1.86623 1.29295 1.21869 1.96236 1.21550 0.98474 0.97533 0.82561 1.44551 1.51965 1.38298 1.02462 1.16068 0.80847 0.81963 0.81277 1.90969 1.40800 1.32313 1.86005 1.42009 1.54310 1.32186 1.02276 1.17193 0.93562 1.04114 0.85625 1.20829 0.98516 0.99579 0.90826 1.20400 0.95034 1.03918 0.99198 1.19695 0.95385 0.93912 0.84944 1.83503 1.31094 1.70570 1.29659 1.20673 0.85805 1.42333 0.98728 0.90775 1.25368 0.98776 0.95298 0.99801 1.69754 1.19698 1.42809 1.24521 0.85129 0.78355 0.79769 0.76902 1.19152 1.19353 1.18015 1.21110 1.00454 1.07978 0.94786 1.20920 0.96811 0.97877 0.94638 1.24269 0.73581 0.85371 0.86156 1.90812 1.46914 1.19053 1.85928 1.84540 1.78407 1.47243 1.20768 0.88235 0.89212 0.89875 0.74920 0.91296 0.90867 0.74269 0.73514 0.80718 0.83687 0.90608 0.87913 0.86239 0.70816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.60 71.98 0.62 -0.40 16 2 C 0.15 1.60 1.02 -11.54 -0.01 1.59 16 3 O -0.53 -4.31 12.72 -135.71 -1.73 -6.03 16 4 C 0.12 2.04 4.45 86.38 0.38 2.43 16 5 N -0.71 -10.97 5.19 -478.53 -2.49 -13.46 16 6 C 0.70 17.82 8.41 179.06 1.51 19.33 16 7 O -0.62 -23.15 13.78 -4.00 -0.06 -23.20 16 8 N -0.66 -14.42 5.35 -317.04 -1.69 -16.11 16 9 C 0.09 2.81 6.30 38.15 0.24 3.05 16 10 C -0.08 -2.16 9.96 22.38 0.22 -1.94 16 11 C -0.17 -6.00 9.98 22.37 0.22 -5.77 16 12 C 0.11 5.23 6.65 22.59 0.15 5.38 16 13 O -0.24 -13.23 8.58 -23.04 -0.20 -13.43 16 14 C -0.40 -24.26 9.94 67.91 0.68 -23.59 16 15 H 0.07 4.82 5.43 -2.91 -0.02 4.80 16 16 C 0.01 0.32 5.49 84.82 0.47 0.78 16 17 N -0.93 -56.96 13.96 21.61 0.30 -56.66 16 18 Si 0.98 45.91 28.62 68.60 1.96 47.87 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 C -0.22 -10.71 9.16 22.37 0.20 -10.51 16 23 C -0.08 -3.35 8.69 22.38 0.19 -3.15 16 24 C 0.47 6.06 7.17 71.24 0.51 6.57 16 25 O -0.54 -11.24 16.74 21.97 0.37 -10.87 16 26 O -0.50 -3.87 13.18 -46.52 -0.61 -4.49 16 27 H 0.10 0.39 6.57 -2.39 -0.02 0.38 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.40 1.34 9.04 -74.06 -0.67 0.67 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.57 7.69 -2.39 -0.02 1.56 16 33 H 0.42 3.35 7.01 -92.70 -0.65 2.70 16 34 H 0.43 5.04 8.84 -92.71 -0.82 4.22 16 35 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.15 4.57 8.06 -2.91 -0.02 4.54 16 37 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 38 H 0.10 5.51 5.63 -2.91 -0.02 5.50 16 39 H 0.12 5.09 6.22 -2.91 -0.02 5.07 16 40 H 0.43 0.07 9.10 -74.06 -0.67 -0.61 16 Total: -1.00 -86.36 349.64 -0.41 -86.77 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -1.65 Total: 15.84 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 5.39 Total: -6.23 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -3.88 Total: -86.23 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -2.22 Total: -58.02 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.96 Total: 47.87 kcal Total: -86.36 -0.41 -86.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603256602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.303 kcal (2) G-P(sol) polarization free energy of solvation -86.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds