Wall clock time and date at job start Tue Mar 31 2020 13:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48500 * 109.46953 * 269.99843 * 3 2 1 5 5 H 1.48493 * 109.46945 * 29.99988 * 3 2 1 6 6 H 1.48495 * 109.46877 * 150.00059 * 3 2 1 7 7 C 1.38954 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99956 * 157.26128 * 7 2 1 9 9 N 1.37093 * 119.99844 * 337.25676 * 7 2 1 10 10 C 1.46499 * 120.00295 * 325.32092 * 9 7 2 11 11 C 1.52995 * 109.47106 * 270.00008 * 10 9 7 12 12 C 1.50701 * 109.46757 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00151 * 359.97438 * 12 11 10 14 14 O 1.34232 * 119.99963 * 179.97438 * 12 11 10 15 15 C 1.34775 * 119.99802 * 145.32428 * 9 7 2 16 16 O 1.21293 * 120.00348 * 184.88413 * 15 9 7 17 17 C 1.50707 * 120.00143 * 4.88145 * 15 9 7 18 18 O 1.42901 * 109.47217 * 183.31499 * 17 15 9 19 19 C 1.42902 * 113.99620 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.46613 * 180.02562 * 19 18 17 21 21 C 1.38823 * 120.75943 * 89.99952 * 20 19 18 22 22 C 1.38050 * 119.29142 * 179.97438 * 21 20 19 23 23 N 1.31969 * 120.83244 * 0.02562 * 22 21 20 24 24 C 1.32249 * 121.64805 * 359.97438 * 23 22 21 25 25 O 1.35681 * 119.68751 * 179.97438 * 24 23 22 26 26 C 1.38384 * 120.75280 * 270.25041 * 20 19 18 27 27 H 0.96998 * 120.00099 * 5.02966 * 1 2 3 28 28 H 1.09001 * 109.46740 * 30.00117 * 10 9 7 29 29 H 1.09006 * 109.46771 * 149.99883 * 10 9 7 30 30 H 1.09001 * 109.47410 * 299.99698 * 11 10 9 31 31 H 1.08999 * 109.47119 * 60.00029 * 11 10 9 32 32 H 0.96696 * 117.00285 * 179.97438 * 14 12 11 33 33 H 1.08994 * 109.46874 * 63.31006 * 17 15 9 34 34 H 1.09003 * 109.46687 * 303.31772 * 17 15 9 35 35 H 1.08992 * 109.47534 * 59.99872 * 19 18 17 36 36 H 1.09003 * 109.47170 * 299.99719 * 19 18 17 37 37 H 1.07997 * 120.35900 * 0.02562 * 21 20 19 38 38 H 1.07994 * 119.58783 * 180.02562 * 22 21 20 39 39 H 0.96700 * 113.99866 * 89.99892 * 25 24 23 40 40 H 1.07996 * 120.44573 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0259 -1.2396 -0.3621 9 7 1.4032 -2.3447 0.4580 10 6 0.4530 -2.2734 1.5707 11 6 1.2024 -2.4461 2.8932 12 6 0.2247 -2.3734 4.0378 13 8 -0.9508 -2.2007 3.8181 14 8 0.6598 -2.5005 5.3012 15 6 1.6822 -3.5323 -0.1149 16 8 1.0819 -4.5281 0.2302 17 6 2.7400 -3.6230 -1.1845 18 8 2.7968 -4.9599 -1.6862 19 6 3.7739 -5.1552 -2.7105 20 6 3.7462 -6.5923 -3.1635 21 6 2.9203 -6.9926 -4.2050 22 6 2.9194 -8.3166 -4.5957 23 7 3.6912 -9.2005 -3.9918 24 6 4.4912 -8.8577 -2.9961 25 8 5.2676 -9.7993 -2.4032 26 6 4.5397 -7.5439 -2.5472 27 1 -0.4850 0.8368 -0.0736 28 1 -0.0469 -1.3048 1.5600 29 1 -0.2882 -3.0660 1.4668 30 1 1.7023 -3.4146 2.9039 31 1 1.9435 -1.6536 2.9970 32 1 -0.0044 -2.4466 6.0018 33 1 3.7077 -3.3518 -0.7624 34 1 2.4941 -2.9399 -1.9976 35 1 4.7629 -4.9161 -2.3197 36 1 3.5498 -4.5039 -3.5553 37 1 2.2859 -6.2757 -4.7050 38 1 2.2791 -8.6332 -5.4056 39 1 6.1392 -9.9030 -2.8091 40 1 5.1914 -7.2680 -1.7314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:30 Heat of formation + Delta-G solvation = -165.569267 kcal Electronic energy + Delta-G solvation = -26602.140089 eV Core-core repulsion = 22383.181117 eV Total energy + Delta-G solvation = -4218.958972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56797 -39.85195 -38.81752 -37.58242 -36.87202 -35.80188 -34.94993 -33.21236 -32.03554 -30.85999 -30.36748 -28.00808 -26.12635 -25.28686 -23.58935 -23.45469 -22.11994 -20.57833 -19.30646 -18.59586 -17.83178 -17.13944 -17.04227 -16.73026 -16.15656 -16.09415 -15.76272 -15.68536 -15.47291 -15.31181 -14.65744 -14.33345 -14.25900 -13.65321 -13.51509 -13.20479 -12.79865 -12.73761 -12.44397 -12.30590 -11.95529 -11.85938 -11.57511 -11.38562 -11.32492 -11.16975 -11.06706 -10.79346 -10.52336 -10.17366 -10.10385 -9.89164 -9.58719 -9.40009 -9.29778 -9.04733 -8.52681 -7.70078 -6.51649 -4.21891 0.89136 0.99225 2.64982 2.99638 3.12294 3.14346 3.30101 3.37848 3.51611 3.71789 3.95290 4.04744 4.50139 4.58021 4.80839 4.93195 4.95755 5.08674 5.15127 5.35073 5.42406 5.56281 5.59200 5.72911 5.76125 5.79532 5.87151 6.03440 6.14714 6.18283 6.30101 6.37325 6.78132 6.83399 7.19437 7.31717 7.32121 7.43603 7.73779 7.76934 8.19305 8.29044 8.91609 9.32987 9.76131 10.49484 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.012818 B = 0.002924 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.911923 B = 9572.450797 C =10983.697849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.359 4.359 8 H 0.092 0.908 9 N -0.437 5.437 10 C 0.124 3.876 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.513 6.513 14 O -0.525 6.525 15 C 0.474 3.526 16 O -0.582 6.582 17 C 0.062 3.938 18 O -0.360 6.360 19 C 0.097 3.903 20 C -0.022 4.022 21 C -0.159 4.159 22 C 0.119 3.881 23 N -0.504 5.504 24 C 0.304 3.696 25 O -0.481 6.481 26 C -0.163 4.163 27 H 0.274 0.726 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.143 0.857 38 H 0.162 0.838 39 H 0.398 0.602 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.267 -5.811 -4.172 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.160 4.160 3 Si 0.739 3.261 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.486 4.486 8 H 0.110 0.890 9 N -0.158 5.158 10 C 0.000 4.000 11 C -0.164 4.164 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.262 3.738 16 O -0.465 6.465 17 C -0.017 4.017 18 O -0.278 6.278 19 C 0.020 3.980 20 C -0.030 4.030 21 C -0.179 4.179 22 C -0.038 4.038 23 N -0.223 5.223 24 C 0.125 3.875 25 O -0.288 6.288 26 C -0.184 4.184 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.259 0.741 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.160 0.840 38 H 0.180 0.820 39 H 0.255 0.745 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.190 -7.222 -4.099 12.386 hybrid contribution 0.585 2.101 0.400 2.217 sum 9.776 -5.122 -3.700 11.640 Atomic orbital electron populations 1.69846 1.06371 1.28420 1.43721 1.25389 0.95062 0.99979 0.95573 0.86158 0.79789 0.81403 0.78759 1.20083 1.20576 1.19132 1.19395 0.97819 0.85301 1.46073 0.88992 1.43289 1.39710 1.05310 1.27469 1.21236 0.91019 1.06203 0.81526 1.21848 0.98084 1.05041 0.91383 1.23749 0.89143 0.71420 0.83169 1.90707 1.19351 1.44921 1.85095 1.84586 1.46147 1.85269 1.17621 1.19999 0.85742 0.84461 0.83600 1.90586 1.53749 1.36718 1.65493 1.22139 0.98878 0.83133 0.97521 1.88063 1.56965 1.29024 1.53739 1.21290 0.93319 0.91347 0.92048 1.19989 0.93800 0.95416 0.93775 1.22148 0.99305 0.98058 0.98407 1.22493 0.95150 0.88664 0.97451 1.67130 1.07358 1.38998 1.08849 1.19111 0.92273 0.85974 0.90138 1.84818 1.30158 1.58352 1.55474 1.22041 1.02558 0.92136 1.01684 0.91517 0.86201 0.91385 0.88577 0.87654 0.74090 0.91401 0.90253 0.92015 0.91693 0.83966 0.82042 0.74540 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.55 11.34 55.50 0.63 -20.92 16 2 C 0.05 1.13 4.95 -17.47 -0.09 1.04 16 3 Si 0.91 17.96 29.61 -169.99 -5.03 12.92 16 4 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.36 -8.32 8.63 -14.93 -0.13 -8.45 16 8 H 0.09 1.95 7.11 -52.49 -0.37 1.58 16 9 N -0.44 -10.44 2.54 -114.81 -0.29 -10.73 16 10 C 0.12 2.92 4.34 -4.04 -0.02 2.90 16 11 C -0.12 -2.41 6.14 -27.88 -0.17 -2.58 16 12 C 0.48 8.83 8.33 36.01 0.30 9.13 16 13 O -0.51 -10.95 16.74 -18.75 -0.31 -11.27 16 14 O -0.52 -7.45 13.42 -39.26 -0.53 -7.97 16 15 C 0.47 11.28 7.70 -10.98 -0.08 11.19 16 16 O -0.58 -15.73 16.06 -14.34 -0.23 -15.96 16 17 C 0.06 1.18 5.00 36.01 0.18 1.36 16 18 O -0.36 -6.71 9.86 -55.12 -0.54 -7.25 16 19 C 0.10 1.27 6.11 36.01 0.22 1.49 16 20 C -0.02 -0.28 5.54 -104.35 -0.58 -0.86 16 21 C -0.16 -1.85 9.81 -39.43 -0.39 -2.24 16 22 C 0.12 1.35 11.18 -17.56 -0.20 1.15 16 23 N -0.50 -6.77 10.39 -13.33 -0.14 -6.91 16 24 C 0.30 3.92 7.75 -17.12 -0.13 3.79 16 25 O -0.48 -5.35 13.56 -18.75 -0.25 -5.61 16 26 C -0.16 -2.04 9.75 -39.27 -0.38 -2.43 16 27 H 0.27 6.59 8.32 -40.82 -0.34 6.25 16 28 H 0.12 3.06 5.32 -51.93 -0.28 2.78 16 29 H 0.07 1.74 7.32 -51.93 -0.38 1.36 16 30 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 31 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 32 H 0.40 3.76 9.10 45.56 0.41 4.17 16 33 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 34 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 35 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.40 2.14 9.06 45.56 0.41 2.55 16 40 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -34.93 358.81 -5.88 -40.81 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -3.12 Total: 11.97 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: -1.47 Total: 15.51 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.20 Total: -38.56 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -1.87 Total: -48.06 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.93 -5.88 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.760 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds