Wall clock time and date at job start Tue Mar 31 2020 13:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48500 * 109.46953 * 269.99843 * 3 2 1 5 5 H 1.48493 * 109.46945 * 29.99988 * 3 2 1 6 6 H 1.48495 * 109.46877 * 150.00059 * 3 2 1 7 7 C 1.38954 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99956 * 157.26128 * 7 2 1 9 9 N 1.37093 * 119.99844 * 337.25676 * 7 2 1 10 10 C 1.46499 * 120.00295 * 325.32092 * 9 7 2 11 11 C 1.52995 * 109.47106 * 270.00008 * 10 9 7 12 12 C 1.50701 * 109.46757 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00151 * 359.97438 * 12 11 10 14 14 O 1.34232 * 119.99963 * 179.97438 * 12 11 10 15 15 C 1.34775 * 119.99802 * 145.32428 * 9 7 2 16 16 O 1.21293 * 120.00348 * 184.88413 * 15 9 7 17 17 C 1.50707 * 120.00143 * 4.88145 * 15 9 7 18 18 O 1.42901 * 109.47217 * 183.31499 * 17 15 9 19 19 C 1.42902 * 113.99620 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.46613 * 180.02562 * 19 18 17 21 21 C 1.38823 * 120.75943 * 89.99952 * 20 19 18 22 22 C 1.38050 * 119.29142 * 179.97438 * 21 20 19 23 23 N 1.31969 * 120.83244 * 0.02562 * 22 21 20 24 24 C 1.32249 * 121.64805 * 359.97438 * 23 22 21 25 25 O 1.35681 * 119.68751 * 179.97438 * 24 23 22 26 26 C 1.38384 * 120.75280 * 270.25041 * 20 19 18 27 27 H 0.96998 * 120.00099 * 5.02966 * 1 2 3 28 28 H 1.09001 * 109.46740 * 30.00117 * 10 9 7 29 29 H 1.09006 * 109.46771 * 149.99883 * 10 9 7 30 30 H 1.09001 * 109.47410 * 299.99698 * 11 10 9 31 31 H 1.08999 * 109.47119 * 60.00029 * 11 10 9 32 32 H 0.96696 * 117.00285 * 179.97438 * 14 12 11 33 33 H 1.08994 * 109.46874 * 63.31006 * 17 15 9 34 34 H 1.09003 * 109.46687 * 303.31772 * 17 15 9 35 35 H 1.08992 * 109.47534 * 59.99872 * 19 18 17 36 36 H 1.09003 * 109.47170 * 299.99719 * 19 18 17 37 37 H 1.07997 * 120.35900 * 0.02562 * 21 20 19 38 38 H 1.07994 * 119.58783 * 180.02562 * 22 21 20 39 39 H 0.96700 * 113.99866 * 89.99892 * 25 24 23 40 40 H 1.07996 * 120.44573 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0259 -1.2396 -0.3621 9 7 1.4032 -2.3447 0.4580 10 6 0.4530 -2.2734 1.5707 11 6 1.2024 -2.4461 2.8932 12 6 0.2247 -2.3734 4.0378 13 8 -0.9508 -2.2007 3.8181 14 8 0.6598 -2.5005 5.3012 15 6 1.6822 -3.5323 -0.1149 16 8 1.0819 -4.5281 0.2302 17 6 2.7400 -3.6230 -1.1845 18 8 2.7968 -4.9599 -1.6862 19 6 3.7739 -5.1552 -2.7105 20 6 3.7462 -6.5923 -3.1635 21 6 2.9203 -6.9926 -4.2050 22 6 2.9194 -8.3166 -4.5957 23 7 3.6912 -9.2005 -3.9918 24 6 4.4912 -8.8577 -2.9961 25 8 5.2676 -9.7993 -2.4032 26 6 4.5397 -7.5439 -2.5472 27 1 -0.4850 0.8368 -0.0736 28 1 -0.0469 -1.3048 1.5600 29 1 -0.2882 -3.0660 1.4668 30 1 1.7023 -3.4146 2.9039 31 1 1.9435 -1.6536 2.9970 32 1 -0.0044 -2.4466 6.0018 33 1 3.7077 -3.3518 -0.7624 34 1 2.4941 -2.9399 -1.9976 35 1 4.7629 -4.9161 -2.3197 36 1 3.5498 -4.5039 -3.5553 37 1 2.2859 -6.2757 -4.7050 38 1 2.2791 -8.6332 -5.4056 39 1 6.1392 -9.9030 -2.8091 40 1 5.1914 -7.2680 -1.7314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:30 Heat of formation + Delta-G solvation = -193.705267 kcal Electronic energy + Delta-G solvation = -26603.360158 eV Core-core repulsion = 22383.181117 eV Total energy + Delta-G solvation = -4220.179041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47851 -41.34700 -40.49694 -38.77627 -37.91207 -37.20770 -36.75525 -34.23012 -33.81650 -32.56981 -31.24898 -29.34948 -27.35471 -27.07664 -25.08788 -24.47399 -23.05724 -22.08497 -21.10101 -19.56163 -19.30705 -18.64134 -18.17648 -18.03392 -17.60447 -17.30354 -17.14545 -16.91593 -16.74119 -16.61395 -16.17007 -15.90040 -15.42511 -15.11211 -14.87591 -14.33454 -14.18145 -14.11658 -13.99166 -13.60789 -13.27054 -13.02066 -12.82219 -12.80121 -12.68607 -12.61620 -12.57165 -12.46332 -12.10178 -11.91136 -11.67898 -11.10648 -10.86476 -10.65052 -10.50311 -10.35994 -9.92764 -9.55974 -8.30395 -6.06805 -0.00361 0.06243 1.17694 1.44352 1.54765 1.65211 1.87482 1.97564 2.35523 2.40917 2.61483 2.83593 3.05042 3.35050 3.69451 3.81720 3.97477 4.06585 4.07112 4.10061 4.22498 4.28425 4.41360 4.48716 4.51196 4.56201 4.60250 4.73463 4.75603 4.86563 4.96368 5.28074 5.34297 5.51053 5.55956 5.58972 5.93018 6.12224 6.40289 6.61998 6.90279 6.99003 7.10669 7.52010 7.95563 8.72211 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.012818 B = 0.002924 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.911923 B = 9572.450797 C =10983.697849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.251 1.251 7 C -0.366 4.366 8 H 0.117 0.883 9 N -0.444 5.444 10 C 0.126 3.874 11 C -0.116 4.116 12 C 0.494 3.506 13 O -0.550 6.550 14 O -0.506 6.506 15 C 0.455 3.545 16 O -0.627 6.627 17 C 0.076 3.924 18 O -0.393 6.393 19 C 0.093 3.907 20 C -0.038 4.038 21 C -0.164 4.164 22 C 0.116 3.884 23 N -0.528 5.528 24 C 0.294 3.706 25 O -0.492 6.492 26 C -0.172 4.172 27 H 0.273 0.727 28 H 0.100 0.900 29 H 0.033 0.967 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.427 0.573 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.160 0.840 38 H 0.192 0.808 39 H 0.420 0.580 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.561 -4.966 -4.392 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.199 4.199 3 Si 0.807 3.193 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.174 1.174 7 C -0.492 4.492 8 H 0.134 0.866 9 N -0.163 5.163 10 C 0.002 3.998 11 C -0.154 4.154 12 C 0.338 3.662 13 O -0.441 6.441 14 O -0.320 6.320 15 C 0.245 3.755 16 O -0.514 6.514 17 C -0.003 4.003 18 O -0.312 6.312 19 C 0.017 3.983 20 C -0.046 4.046 21 C -0.184 4.184 22 C -0.040 4.040 23 N -0.248 5.248 24 C 0.116 3.884 25 O -0.302 6.302 26 C -0.193 4.193 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.140 0.860 32 H 0.289 0.711 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.178 0.822 38 H 0.209 0.791 39 H 0.281 0.719 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.542 -6.382 -4.302 13.873 hybrid contribution -0.143 1.748 0.482 1.819 sum 11.399 -4.634 -3.820 12.884 Atomic orbital electron populations 1.69989 1.08303 1.29133 1.45355 1.26288 0.95515 1.03247 0.94843 0.85072 0.78711 0.76625 0.78892 1.19407 1.21688 1.17414 1.19912 0.98695 0.84948 1.45679 0.86598 1.43554 1.39261 1.05942 1.27562 1.21012 0.91211 1.03555 0.84016 1.21606 0.97980 1.05890 0.89964 1.23389 0.88058 0.70598 0.84201 1.90707 1.20721 1.46823 1.85874 1.84500 1.46666 1.84204 1.16622 1.20940 0.86527 0.83735 0.84274 1.90545 1.55671 1.38073 1.67084 1.21957 0.98204 0.83873 0.96225 1.88009 1.59077 1.28624 1.55473 1.21562 0.93240 0.91931 0.91554 1.20157 0.94481 0.95514 0.94445 1.22423 0.99110 0.98634 0.98206 1.23016 0.94788 0.88459 0.97710 1.67190 1.08155 1.39915 1.09534 1.19283 0.92569 0.86398 0.90153 1.84756 1.31578 1.57954 1.55960 1.22190 1.02948 0.92112 1.02030 0.91703 0.88252 0.94888 0.88062 0.85967 0.71148 0.88540 0.89368 0.89671 0.89635 0.82222 0.79132 0.71942 0.82996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.00 11.34 21.66 0.25 -45.76 16 2 C 0.01 0.23 4.95 84.93 0.42 0.65 16 3 Si 0.98 35.63 29.61 68.60 2.03 37.66 16 4 H -0.27 -9.42 7.11 99.48 0.71 -8.72 16 5 H -0.29 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.25 -8.37 7.11 99.48 0.71 -7.67 16 7 C -0.37 -16.53 8.63 84.04 0.72 -15.80 16 8 H 0.12 4.59 7.11 -2.91 -0.02 4.57 16 9 N -0.44 -21.30 2.54 -635.53 -1.61 -22.92 16 10 C 0.13 6.14 4.34 86.38 0.37 6.51 16 11 C -0.12 -4.46 6.14 29.85 0.18 -4.28 16 12 C 0.49 17.82 8.33 71.24 0.59 18.41 16 13 O -0.55 -23.88 16.74 21.96 0.37 -23.51 16 14 O -0.51 -13.25 13.42 -51.44 -0.69 -13.94 16 15 C 0.46 21.83 7.70 87.66 0.68 22.50 16 16 O -0.63 -34.93 16.06 15.95 0.26 -34.67 16 17 C 0.08 2.78 5.00 71.24 0.36 3.13 16 18 O -0.39 -14.23 9.86 -129.96 -1.28 -15.51 16 19 C 0.09 2.25 6.11 71.24 0.44 2.68 16 20 C -0.04 -0.93 5.54 -19.69 -0.11 -1.04 16 21 C -0.16 -3.58 9.81 22.36 0.22 -3.36 16 22 C 0.12 2.48 11.18 84.63 0.95 3.43 16 23 N -0.53 -13.73 10.39 -308.94 -3.21 -16.94 16 24 C 0.29 7.39 7.75 84.79 0.66 8.05 16 25 O -0.49 -10.55 13.56 -89.99 -1.22 -11.77 16 26 C -0.17 -4.14 9.75 22.47 0.22 -3.92 16 27 H 0.27 13.40 8.32 -92.71 -0.77 12.63 16 28 H 0.10 5.27 5.32 -2.39 -0.01 5.26 16 29 H 0.03 1.78 7.32 -2.38 -0.02 1.77 16 30 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 31 H 0.12 4.28 8.14 -2.39 -0.02 4.26 16 32 H 0.43 6.87 9.10 -74.06 -0.67 6.20 16 33 H 0.10 2.92 7.94 -2.39 -0.02 2.90 16 34 H 0.09 3.03 7.94 -2.39 -0.02 3.01 16 35 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.09 1.69 8.10 -2.39 -0.02 1.67 16 37 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.19 2.70 8.06 -2.91 -0.02 2.67 16 39 H 0.42 4.07 9.06 -74.06 -0.67 3.40 16 40 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -77.70 358.81 0.35 -77.35 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -0.23 Total: 33.03 kcal Atomic # 6 Polarization: 31.28 SS G_CDS: 5.69 Total: 36.98 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -4.58 Total: -85.61 kcal Atomic # 8 Polarization: -96.84 SS G_CDS: -2.57 Total: -99.41 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.66 kcal Total: -77.70 0.35 -77.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.357 kcal (2) G-P(sol) polarization free energy of solvation -77.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds