Wall clock time and date at job start Tue Mar 31 2020 13:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48495 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47153 * 299.99995 * 3 2 1 6 6 H 1.48498 * 109.47063 * 60.00110 * 3 2 1 7 7 C 1.38949 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00218 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99980 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99642 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99840 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46939 * 180.02562 * 12 10 9 14 14 C 1.46842 * 111.00295 * 190.25558 * 13 12 10 15 15 C 1.53035 * 109.52627 * 174.15768 * 14 13 12 16 16 H 1.08993 * 109.53611 * 299.21942 * 15 14 13 17 17 C 1.53006 * 109.50424 * 179.11907 * 15 14 13 18 18 F 1.39897 * 109.47129 * 300.20164 * 17 15 14 19 19 F 1.39900 * 109.46764 * 60.20143 * 17 15 14 20 20 F 1.39895 * 109.46931 * 180.19885 * 17 15 14 21 21 C 1.53119 * 109.27418 * 59.18228 * 15 14 13 22 22 C 1.53113 * 109.16087 * 302.34073 * 21 15 14 23 23 H 1.08989 * 109.50675 * 297.71647 * 22 21 15 24 24 C 1.50703 * 109.50287 * 177.63479 * 22 21 15 25 25 O 1.20824 * 119.99962 * 0.02562 * 24 22 21 26 26 O 1.34233 * 120.00164 * 180.02562 * 24 22 21 27 27 C 1.46851 * 111.00244 * 66.04420 * 13 12 10 28 28 H 0.96996 * 119.99153 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99876 * 359.97438 * 9 7 2 30 30 H 1.08991 * 109.47252 * 60.00454 * 12 10 9 31 31 H 1.09003 * 109.47216 * 299.99502 * 12 10 9 32 32 H 1.09002 * 109.45960 * 54.14438 * 14 13 12 33 33 H 1.09004 * 109.46125 * 294.18129 * 14 13 12 34 34 H 1.08999 * 109.52518 * 62.25489 * 21 15 14 35 35 H 1.09006 * 109.52039 * 182.44035 * 21 15 14 36 36 H 0.96692 * 117.00185 * 180.02562 * 26 24 22 37 37 H 1.09002 * 109.45716 * 65.82355 * 27 13 12 38 38 H 1.08998 * 109.46048 * 305.86106 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0016 14 6 1.5149 -7.2562 -0.2419 15 6 2.5519 -8.3733 -0.3793 16 1 3.2078 -8.1600 -1.2233 17 6 1.8384 -9.7069 -0.6111 18 9 0.9954 -9.9791 0.4716 19 9 1.0808 -9.6325 -1.7849 20 9 2.7868 -10.7282 -0.7321 21 6 3.3813 -8.4539 0.9053 22 6 4.0436 -7.0974 1.1617 23 1 4.7228 -6.8633 0.3422 24 6 4.8151 -7.1508 2.4552 25 8 4.8344 -8.1688 3.1056 26 8 5.4809 -6.0673 2.8847 27 6 2.9634 -6.0173 1.2545 28 1 -0.4849 0.8401 0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6168 -4.9209 -0.8886 31 1 0.6174 -4.9205 0.8914 32 1 0.9321 -7.1868 -1.1604 33 1 0.8508 -7.4778 0.5936 34 1 2.7315 -8.7064 1.7432 35 1 4.1496 -9.2193 0.7954 36 1 5.9616 -6.1498 3.7197 37 1 2.2925 -6.2447 2.0829 38 1 3.4325 -5.0480 1.4229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:51 Heat of formation + Delta-G solvation = -280.899239 kcal Electronic energy + Delta-G solvation = -28507.006166 eV Core-core repulsion = 23741.189371 eV Total energy + Delta-G solvation = -4765.816796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.28818 -47.76498 -47.74682 -40.70797 -39.15132 -37.72834 -36.20373 -34.25297 -33.54813 -32.21774 -31.26715 -27.77256 -26.07958 -25.10910 -24.57551 -22.61122 -21.49771 -20.13414 -19.32931 -18.52011 -18.44994 -18.27039 -17.95610 -17.55803 -16.30058 -16.25006 -15.84743 -15.56461 -14.78395 -14.71227 -14.67955 -14.59813 -14.18298 -14.12720 -13.97801 -13.91198 -13.83081 -13.57994 -13.54515 -13.37306 -13.09272 -12.38540 -12.06836 -11.82008 -11.64506 -11.55634 -11.54323 -11.33417 -11.14297 -10.98548 -10.74769 -10.52547 -10.37111 -10.26553 -9.53155 -8.61913 -8.11023 -7.99113 -6.46337 -3.87231 2.07806 2.45798 2.93672 3.13363 3.24752 3.31193 3.46446 3.70270 3.82897 3.86023 4.02001 4.17857 4.48463 4.51233 4.65718 4.75040 4.95619 5.06604 5.11457 5.19262 5.32150 5.37605 5.46447 5.56364 5.62201 5.70788 5.78163 5.94418 6.16109 6.21270 6.41950 6.97567 7.06915 7.51513 7.81572 8.01110 8.55577 9.13219 9.48485 9.99128 10.71279 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003384 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.066548 B = 8272.913024 C = 9661.285882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.105 0.895 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.576 6.576 12 C 0.047 3.953 13 N -0.508 5.508 14 C 0.053 3.947 15 C -0.129 4.129 16 H 0.129 0.871 17 C 0.459 3.541 18 F -0.182 7.182 19 F -0.181 7.181 20 F -0.182 7.182 21 C -0.105 4.105 22 C -0.071 4.071 23 H 0.126 0.874 24 C 0.491 3.509 25 O -0.521 6.521 26 O -0.504 6.504 27 C 0.058 3.942 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.409 0.591 37 H 0.033 0.967 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.671 -16.633 1.327 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.123 0.877 9 N -0.198 5.198 10 C 0.227 3.773 11 O -0.460 6.460 12 C -0.084 4.084 13 N -0.232 5.232 14 C -0.076 4.076 15 C -0.149 4.149 16 H 0.147 0.853 17 C 0.405 3.595 18 F -0.164 7.164 19 F -0.162 7.162 20 F -0.163 7.163 21 C -0.143 4.143 22 C -0.091 4.091 23 H 0.144 0.856 24 C 0.333 3.667 25 O -0.410 6.410 26 O -0.314 6.314 27 C -0.070 4.070 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.267 0.733 37 H 0.051 0.949 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.451 -16.642 0.744 17.013 hybrid contribution -0.667 0.373 1.100 1.339 sum 2.785 -16.269 1.844 16.608 Atomic orbital electron populations 1.69623 1.05963 1.28130 1.50469 1.25270 0.95623 0.99764 0.97232 0.85803 0.79736 0.81117 0.77720 1.19170 1.20743 1.20777 1.19751 0.93413 0.82092 1.47553 0.87742 1.41867 1.09237 1.04585 1.64120 1.19635 0.88416 0.84432 0.84856 1.90499 1.13500 1.86769 1.55210 1.21867 0.93662 0.90658 1.02163 1.61367 1.25593 1.01041 1.35172 1.22126 0.93971 0.88755 1.02711 1.22447 0.99220 0.90080 1.03150 0.85293 1.20434 0.77542 0.87662 0.73909 1.93178 1.72811 1.94890 1.55472 1.93193 1.77414 1.96542 1.49086 1.93182 1.64438 1.62971 1.95753 1.21540 0.99868 0.96834 0.96039 1.20917 0.97897 0.96637 0.93622 0.85630 1.23243 0.76320 0.80240 0.86847 1.90710 1.60630 1.32568 1.57064 1.84636 1.61939 1.40784 1.44053 1.22274 0.94182 1.00803 0.89724 0.91879 0.77460 0.88702 0.92938 0.88921 0.93375 0.89761 0.89454 0.73283 0.94878 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.78 13.05 55.50 0.72 -23.05 16 2 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 3 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -7.97 9.68 -14.93 -0.14 -8.11 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.44 5.29 -10.97 -0.06 -13.50 16 10 C 0.44 9.61 7.46 -10.99 -0.08 9.52 16 11 O -0.58 -14.26 13.92 5.55 0.08 -14.18 16 12 C 0.05 0.76 5.45 -4.98 -0.03 0.73 16 13 N -0.51 -7.33 4.39 -236.12 -1.04 -8.37 16 14 C 0.05 0.60 4.50 -3.84 -0.02 0.58 16 15 C -0.13 -1.30 2.33 -90.54 -0.21 -1.51 16 16 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 17 C 0.46 4.73 2.69 37.16 0.10 4.83 16 18 F -0.18 -2.02 16.22 2.25 0.04 -1.98 16 19 F -0.18 -1.94 16.82 2.25 0.04 -1.90 16 20 F -0.18 -1.95 16.85 2.25 0.04 -1.91 16 21 C -0.11 -1.12 3.62 -26.61 -0.10 -1.22 16 22 C -0.07 -0.87 2.79 -91.69 -0.26 -1.12 16 23 H 0.13 1.49 8.14 -51.94 -0.42 1.07 16 24 C 0.49 6.18 7.63 36.01 0.27 6.46 16 25 O -0.52 -7.50 16.73 -18.75 -0.31 -7.82 16 26 O -0.50 -5.74 13.35 -39.27 -0.52 -6.26 16 27 C 0.06 0.83 4.32 -3.83 -0.02 0.82 16 28 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 29 H 0.39 9.00 7.90 -40.82 -0.32 8.68 16 30 H 0.09 1.34 7.98 -51.93 -0.41 0.93 16 31 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 32 H 0.09 0.96 7.70 -51.93 -0.40 0.56 16 33 H 0.05 0.52 7.77 -51.93 -0.40 0.12 16 34 H 0.08 0.95 7.65 -51.93 -0.40 0.55 16 35 H 0.09 0.88 7.88 -51.93 -0.41 0.47 16 36 H 0.41 2.71 9.10 45.56 0.41 3.13 16 37 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.12 2.22 5.80 -51.93 -0.30 1.92 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -31.39 333.27 -5.03 -36.41 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -3.43 Total: 10.68 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -0.57 Total: 11.46 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.37 Total: -44.92 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.76 Total: -28.26 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.39 -5.03 -36.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -244.485 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds