Wall clock time and date at job start Tue Mar 31 2020 13:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48495 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47153 * 299.99995 * 3 2 1 6 6 H 1.48498 * 109.47063 * 60.00110 * 3 2 1 7 7 C 1.38949 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00218 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99980 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99642 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99840 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46939 * 180.02562 * 12 10 9 14 14 C 1.46842 * 111.00295 * 190.25558 * 13 12 10 15 15 C 1.53035 * 109.52627 * 174.15768 * 14 13 12 16 16 H 1.08993 * 109.53611 * 299.21942 * 15 14 13 17 17 C 1.53006 * 109.50424 * 179.11907 * 15 14 13 18 18 F 1.39897 * 109.47129 * 300.20164 * 17 15 14 19 19 F 1.39900 * 109.46764 * 60.20143 * 17 15 14 20 20 F 1.39895 * 109.46931 * 180.19885 * 17 15 14 21 21 C 1.53119 * 109.27418 * 59.18228 * 15 14 13 22 22 C 1.53113 * 109.16087 * 302.34073 * 21 15 14 23 23 H 1.08989 * 109.50675 * 297.71647 * 22 21 15 24 24 C 1.50703 * 109.50287 * 177.63479 * 22 21 15 25 25 O 1.20824 * 119.99962 * 0.02562 * 24 22 21 26 26 O 1.34233 * 120.00164 * 180.02562 * 24 22 21 27 27 C 1.46851 * 111.00244 * 66.04420 * 13 12 10 28 28 H 0.96996 * 119.99153 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99876 * 359.97438 * 9 7 2 30 30 H 1.08991 * 109.47252 * 60.00454 * 12 10 9 31 31 H 1.09003 * 109.47216 * 299.99502 * 12 10 9 32 32 H 1.09002 * 109.45960 * 54.14438 * 14 13 12 33 33 H 1.09004 * 109.46125 * 294.18129 * 14 13 12 34 34 H 1.08999 * 109.52518 * 62.25489 * 21 15 14 35 35 H 1.09006 * 109.52039 * 182.44035 * 21 15 14 36 36 H 0.96692 * 117.00185 * 180.02562 * 26 24 22 37 37 H 1.09002 * 109.45716 * 65.82355 * 27 13 12 38 38 H 1.08998 * 109.46048 * 305.86106 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0016 14 6 1.5149 -7.2562 -0.2419 15 6 2.5519 -8.3733 -0.3793 16 1 3.2078 -8.1600 -1.2233 17 6 1.8384 -9.7069 -0.6111 18 9 0.9954 -9.9791 0.4716 19 9 1.0808 -9.6325 -1.7849 20 9 2.7868 -10.7282 -0.7321 21 6 3.3813 -8.4539 0.9053 22 6 4.0436 -7.0974 1.1617 23 1 4.7228 -6.8633 0.3422 24 6 4.8151 -7.1508 2.4552 25 8 4.8344 -8.1688 3.1056 26 8 5.4809 -6.0673 2.8847 27 6 2.9634 -6.0173 1.2545 28 1 -0.4849 0.8401 0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6168 -4.9209 -0.8886 31 1 0.6174 -4.9205 0.8914 32 1 0.9321 -7.1868 -1.1604 33 1 0.8508 -7.4778 0.5936 34 1 2.7315 -8.7064 1.7432 35 1 4.1496 -9.2193 0.7954 36 1 5.9616 -6.1498 3.7197 37 1 2.2925 -6.2447 2.0829 38 1 3.4325 -5.0480 1.4229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608187832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:50 Heat of formation + Delta-G solvation = -303.958880 kcal Electronic energy + Delta-G solvation = -28508.006107 eV Core-core repulsion = 23741.189371 eV Total energy + Delta-G solvation = -4766.816737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.11447 -48.59020 -48.57776 -41.72780 -40.47207 -39.17550 -37.20253 -35.97285 -34.84219 -33.28437 -33.08590 -29.16315 -26.99347 -26.56131 -25.86712 -23.75753 -22.44491 -21.06458 -20.99505 -19.86122 -19.36599 -19.31414 -19.16498 -18.58009 -17.74875 -17.26249 -17.00094 -16.59986 -16.50000 -15.95704 -15.81433 -15.56525 -15.51780 -15.15048 -15.03601 -14.92556 -14.76667 -14.72721 -14.67387 -14.37320 -14.17979 -13.82823 -13.46659 -13.10301 -13.03807 -12.75577 -12.71573 -12.54119 -12.35446 -12.21507 -12.09170 -11.98590 -11.86235 -11.55106 -11.39389 -10.24519 -9.94736 -9.35812 -8.42563 -5.90095 1.06937 1.39311 1.45147 1.57862 1.60812 2.06383 2.10888 2.29958 2.53224 2.83099 3.04374 3.09480 3.25288 3.34467 3.58638 3.64074 3.76563 3.88648 4.08693 4.18757 4.31746 4.37702 4.43567 4.51932 4.58602 4.60430 4.66197 4.78735 4.97039 5.04246 5.46327 5.54558 5.76474 5.96401 6.09815 6.65203 6.94716 7.18280 7.62239 8.17350 8.75039 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003384 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.066548 B = 8272.913024 C = 9661.285882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.989 3.011 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.326 4.326 8 H 0.081 0.919 9 N -0.575 5.575 10 C 0.443 3.557 11 O -0.608 6.608 12 C 0.058 3.942 13 N -0.519 5.519 14 C 0.053 3.947 15 C -0.122 4.122 16 H 0.140 0.860 17 C 0.466 3.534 18 F -0.186 7.186 19 F -0.182 7.182 20 F -0.183 7.183 21 C -0.099 4.099 22 C -0.066 4.066 23 H 0.128 0.872 24 C 0.496 3.504 25 O -0.540 6.540 26 O -0.511 6.511 27 C 0.063 3.937 28 H 0.276 0.724 29 H 0.396 0.604 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.428 0.572 37 H 0.039 0.961 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -17.474 1.061 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.456 4.456 8 H 0.099 0.901 9 N -0.213 5.213 10 C 0.230 3.770 11 O -0.493 6.493 12 C -0.073 4.073 13 N -0.243 5.243 14 C -0.074 4.074 15 C -0.142 4.142 16 H 0.158 0.842 17 C 0.411 3.589 18 F -0.167 7.167 19 F -0.163 7.163 20 F -0.165 7.165 21 C -0.136 4.136 22 C -0.086 4.086 23 H 0.146 0.854 24 C 0.339 3.661 25 O -0.430 6.430 26 O -0.324 6.324 27 C -0.065 4.065 28 H 0.085 0.915 29 H 0.229 0.771 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.289 0.711 37 H 0.057 0.943 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.090 -17.499 0.489 17.776 hybrid contribution -0.503 0.577 1.207 1.430 sum 2.587 -16.922 1.696 17.202 Atomic orbital electron populations 1.69681 1.06794 1.29050 1.50810 1.25974 0.96455 1.02272 0.96561 0.84920 0.78181 0.77454 0.78114 1.19673 1.19890 1.19906 1.19681 0.92709 0.83900 1.49315 0.90112 1.41934 1.09333 1.04697 1.65345 1.20669 0.88350 0.85764 0.82237 1.90484 1.15374 1.87641 1.55829 1.21751 0.93360 0.87922 1.04254 1.61296 1.25861 1.02015 1.35175 1.22196 0.94268 0.87249 1.03728 1.22386 0.98944 0.89596 1.03251 0.84183 1.20340 0.77341 0.87506 0.73718 1.93176 1.72952 1.94924 1.55687 1.93196 1.77441 1.96535 1.49137 1.93184 1.64491 1.63045 1.95748 1.21485 1.00000 0.95960 0.96195 1.20868 0.97321 0.96766 0.93629 0.85427 1.23256 0.76064 0.80015 0.86723 1.90703 1.61447 1.33224 1.57645 1.84608 1.61945 1.40403 1.45424 1.22078 0.94733 0.99590 0.90139 0.91478 0.77058 0.86221 0.90997 0.87514 0.92490 0.90145 0.88591 0.71052 0.94278 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.54 13.05 21.66 0.28 -48.25 16 2 C -0.01 -0.68 5.50 84.92 0.47 -0.22 16 3 Si 0.99 41.91 29.55 68.60 2.03 43.93 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 7 C -0.33 -17.78 9.68 84.04 0.81 -16.96 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.58 -27.87 5.29 -306.99 -1.62 -29.49 16 10 C 0.44 19.32 7.46 87.66 0.65 19.97 16 11 O -0.61 -30.70 13.92 -3.06 -0.04 -30.74 16 12 C 0.06 1.75 5.45 85.55 0.47 2.22 16 13 N -0.52 -14.14 4.39 -900.94 -3.96 -18.09 16 14 C 0.05 1.06 4.50 86.33 0.39 1.45 16 15 C -0.12 -2.16 2.33 -10.74 -0.03 -2.19 16 16 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 17 C 0.47 8.46 2.69 71.98 0.19 8.65 16 18 F -0.19 -3.69 16.22 44.97 0.73 -2.96 16 19 F -0.18 -3.44 16.82 44.97 0.76 -2.68 16 20 F -0.18 -3.51 16.85 44.97 0.76 -2.75 16 21 C -0.10 -1.92 3.62 30.67 0.11 -1.81 16 22 C -0.07 -1.54 2.79 -11.49 -0.03 -1.58 16 23 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 24 C 0.50 12.10 7.63 71.24 0.54 12.64 16 25 O -0.54 -14.99 16.73 21.97 0.37 -14.62 16 26 O -0.51 -11.40 13.35 -51.45 -0.69 -12.08 16 27 C 0.06 1.76 4.32 86.32 0.37 2.13 16 28 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 29 H 0.40 18.25 7.90 -92.71 -0.73 17.52 16 30 H 0.12 3.07 7.98 -2.39 -0.02 3.06 16 31 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 32 H 0.11 1.86 7.70 -2.39 -0.02 1.84 16 33 H 0.06 1.07 7.77 -2.39 -0.02 1.05 16 34 H 0.08 1.66 7.65 -2.39 -0.02 1.64 16 35 H 0.10 1.74 7.88 -2.38 -0.02 1.72 16 36 H 0.43 5.35 9.10 -74.06 -0.67 4.68 16 37 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 3.14 5.80 -2.39 -0.01 3.12 16 Total: -1.00 -67.37 333.27 2.30 -65.07 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.26 Total: 28.37 kcal Atomic # 6 Polarization: 20.36 SS G_CDS: 3.95 Total: 24.31 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -5.30 Total: -95.84 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -0.36 Total: -57.45 kcal Atomic # 9 Polarization: -10.64 SS G_CDS: 2.24 Total: -8.39 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -67.37 2.30 -65.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -238.888 kcal (2) G-P(sol) polarization free energy of solvation -67.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -306.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -303.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds