Wall clock time and date at job start Tue Mar 31 2020 13:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34197 * 125.79887 * 2 1 4 4 H 0.97004 * 125.38100 * 0.02562 * 3 2 1 5 5 C 1.37835 * 109.22759 * 179.83679 * 3 2 1 6 6 C 1.46643 * 125.84788 * 180.15642 * 5 3 2 7 7 O 1.21603 * 119.99909 * 180.32769 * 6 5 3 8 8 O 1.34873 * 120.00309 * 0.32223 * 6 5 3 9 9 C 1.36417 * 108.30274 * 0.42974 * 5 3 2 10 10 C 1.50694 * 126.50418 * 179.76531 * 9 5 3 11 11 C 1.38323 * 125.79899 * 180.31245 * 2 1 3 12 12 C 1.47256 * 126.46029 * 359.97254 * 11 2 1 13 13 O 1.21533 * 119.99455 * 90.03079 * 12 11 2 14 14 O 1.34755 * 120.00321 * 270.02818 * 12 11 2 15 15 C 1.45204 * 117.00338 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47670 * 180.02562 * 15 14 12 17 17 O 1.21281 * 119.99492 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00198 * 179.97438 * 16 15 14 19 19 C 1.46496 * 119.99974 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47355 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99586 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99917 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99817 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00427 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47355 * 89.99546 * 24 22 20 26 26 H 1.48504 * 109.47253 * 209.99990 * 24 22 20 27 27 H 1.48504 * 109.46708 * 329.99434 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68986 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69086 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69067 * 1 2 3 31 31 H 0.96697 * 116.99684 * 180.02562 * 8 6 5 32 32 H 1.09001 * 109.47494 * 269.97819 * 10 9 5 33 33 H 1.09000 * 109.47552 * 29.97577 * 10 9 5 34 34 H 1.08998 * 109.47296 * 149.97822 * 10 9 5 35 35 H 1.09005 * 109.46898 * 299.99972 * 15 14 12 36 36 H 1.08999 * 109.47236 * 59.99405 * 15 14 12 37 37 H 0.96997 * 119.99775 * 0.02562 * 18 16 15 38 38 H 1.09005 * 109.47182 * 300.00414 * 19 18 16 39 39 H 1.08999 * 109.47256 * 60.00033 * 19 18 16 40 40 H 0.97001 * 120.00102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2920 1.0884 0.0000 4 1 1.9791 2.0066 0.0004 5 6 3.6131 0.6953 0.0037 6 6 4.7752 1.5897 0.0081 7 8 5.8994 1.1259 0.0052 8 8 4.5974 2.9266 0.0154 9 6 3.6544 -0.6682 -0.0036 10 6 4.8922 -1.5276 -0.0078 11 6 2.3161 -1.1219 -0.0061 12 6 1.8674 -2.5244 -0.0132 13 8 1.6824 -3.0978 -1.0687 14 8 1.6620 -3.1721 1.1505 15 6 1.2207 -4.5529 1.0676 16 6 1.0444 -5.1084 2.4573 17 8 1.2690 -4.4095 3.4226 18 7 0.6371 -6.3818 2.6274 19 6 0.4662 -6.9220 3.9783 20 6 0.0081 -8.3551 3.8922 21 1 -0.1412 -8.8171 2.9276 22 6 -0.2203 -9.0762 5.0449 23 7 -0.6206 -10.3267 4.9697 24 14 0.0373 -8.2768 6.7134 25 1 -1.2281 -7.6392 7.1575 26 1 0.4439 -9.3098 7.6998 27 1 1.1011 -7.2459 6.6093 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 5.3935 3.4753 0.0177 32 1 5.1909 -1.7296 -1.0365 33 1 5.6982 -1.0064 0.5087 34 1 4.6831 -2.4685 0.5012 35 1 0.2708 -4.5994 0.5349 36 1 1.9663 -5.1411 0.5326 37 1 0.4578 -6.9409 1.8552 38 1 1.4162 -6.8759 4.5109 39 1 -0.2791 -6.3335 4.5134 40 1 -0.7810 -10.8343 5.7806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610404031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:12 Heat of formation + Delta-G solvation = -173.844423 kcal Electronic energy + Delta-G solvation = -26387.090845 eV Core-core repulsion = 22167.773035 eV Total energy + Delta-G solvation = -4219.317810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.24847 -40.41179 -39.93747 -38.77101 -36.61106 -36.29671 -34.36560 -33.50925 -32.44235 -32.30594 -29.62337 -28.55121 -27.40011 -27.13567 -24.31078 -22.63911 -22.02542 -20.38422 -20.11149 -19.77219 -19.12818 -17.88830 -17.54778 -17.44712 -16.67922 -16.33698 -16.33007 -15.71824 -15.42155 -15.10757 -14.96246 -14.66054 -14.12401 -13.98182 -13.75805 -13.46834 -13.30112 -13.15288 -12.99968 -12.73521 -12.65302 -12.49247 -12.36640 -12.13709 -12.04852 -11.97983 -11.07394 -11.01934 -10.82868 -10.79531 -10.71860 -9.99973 -9.54222 -9.40221 -9.28438 -8.81662 -8.72990 -8.26272 -6.24044 -4.27045 0.71676 1.62399 1.92612 2.29936 2.40288 2.60331 2.82469 3.04133 3.25505 3.32494 3.40511 3.91293 4.15545 4.31134 4.39971 4.56720 4.74838 4.85759 5.03316 5.04778 5.10339 5.12507 5.18319 5.23798 5.27518 5.42586 5.53122 5.71324 5.75372 5.94048 6.10954 6.23548 6.29489 6.73627 6.74283 7.01292 7.10170 7.32134 7.40154 7.61564 8.05486 8.41746 8.68683 8.80603 9.35109 10.87699 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.021957 B = 0.002264 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.924530 B =12366.750277 C =12654.163594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.132 3.868 3 N -0.513 5.513 4 H 0.429 0.571 5 C -0.054 4.054 6 C 0.557 3.443 7 O -0.499 6.499 8 O -0.522 6.522 9 C -0.004 4.004 10 C -0.104 4.104 11 C -0.210 4.210 12 C 0.547 3.453 13 O -0.497 6.497 14 O -0.320 6.320 15 C 0.046 3.954 16 C 0.502 3.498 17 O -0.535 6.535 18 N -0.700 5.700 19 C 0.222 3.778 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.078 3.922 23 N -0.891 5.891 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.260 1.260 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.419 0.581 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.399 0.601 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 26.608 -13.309 30.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.009 3.991 3 N -0.109 5.109 4 H 0.269 0.731 5 C -0.162 4.162 6 C 0.401 3.599 7 O -0.387 6.387 8 O -0.335 6.335 9 C -0.012 4.012 10 C -0.161 4.161 11 C -0.218 4.218 12 C 0.389 3.611 13 O -0.385 6.385 14 O -0.235 6.235 15 C -0.031 4.031 16 C 0.285 3.715 17 O -0.413 6.413 18 N -0.350 5.350 19 C 0.101 3.899 20 C -0.583 4.583 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.528 5.528 24 Si 0.703 3.297 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.184 1.184 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.278 0.722 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.233 0.767 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.680 26.535 -12.778 29.994 hybrid contribution 0.261 0.657 0.417 0.821 sum 5.941 27.191 -12.361 30.454 Atomic orbital electron populations 1.20665 0.85971 1.04739 1.04666 1.20708 0.93917 0.84857 0.99646 1.41456 1.04972 1.08983 1.55476 0.73114 1.18430 0.81937 0.91954 1.23857 1.19340 0.87388 0.80341 0.72797 1.90957 1.24340 1.76709 1.46721 1.84539 1.43829 1.18747 1.86414 1.19593 0.94096 0.90730 0.96746 1.20572 0.93648 0.98548 1.03305 1.18209 0.93160 0.89553 1.20834 1.20168 0.73295 0.85954 0.81696 1.90870 1.47210 1.67896 1.32483 1.86738 1.77356 1.26036 1.33356 1.22873 1.02421 0.80278 0.97554 1.19917 0.78910 0.83090 0.89564 1.90707 1.50458 1.58587 1.41513 1.46061 1.66282 1.10960 1.11719 1.19550 0.96912 0.94514 0.78968 1.21066 1.47502 0.94227 0.95540 0.90105 1.24791 0.93887 0.94650 0.99276 1.69876 1.45028 1.08602 1.29271 0.86817 0.79678 0.79630 0.83580 1.19818 1.20858 1.18435 0.88756 0.89051 0.90127 0.72171 0.90206 0.89200 0.90932 0.88186 0.88151 0.76697 0.95427 0.95896 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.24 36.01 0.37 -0.25 16 2 C 0.13 1.17 7.21 -81.53 -0.59 0.59 16 3 N -0.51 -3.74 6.01 -5.62 -0.03 -3.77 16 4 H 0.43 1.69 8.96 -40.82 -0.37 1.33 16 5 C -0.05 -0.53 7.02 -82.43 -0.58 -1.11 16 6 C 0.56 5.04 8.31 34.12 0.28 5.32 16 7 O -0.50 -5.78 15.48 -19.34 -0.30 -6.08 16 8 O -0.52 -2.80 13.44 -40.97 -0.55 -3.35 16 9 C 0.00 -0.05 6.21 -104.12 -0.65 -0.70 16 10 C -0.10 -1.16 9.63 36.00 0.35 -0.81 16 11 C -0.21 -2.55 6.01 -105.04 -0.63 -3.18 16 12 C 0.55 7.68 7.13 34.40 0.25 7.92 16 13 O -0.50 -7.64 16.90 -19.29 -0.33 -7.97 16 14 O -0.32 -4.98 9.77 -47.32 -0.46 -5.44 16 15 C 0.05 0.67 5.95 36.00 0.21 0.88 16 16 C 0.50 9.46 7.91 -10.99 -0.09 9.37 16 17 O -0.54 -12.28 16.50 -14.10 -0.23 -12.51 16 18 N -0.70 -13.70 5.55 -61.47 -0.34 -14.04 16 19 C 0.22 5.34 4.50 -5.20 -0.02 5.32 16 20 C -0.55 -14.67 9.83 -34.44 -0.34 -15.01 16 21 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 22 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 23 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 24 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.62 7.93 -51.93 -0.41 0.20 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.42 0.46 9.11 45.56 0.42 0.87 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.01 6.41 -51.93 -0.33 0.67 16 34 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.40 6.70 8.32 -40.82 -0.34 6.36 16 38 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 39 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -37.10 361.65 -6.13 -43.23 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.91 Total: 2.94 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -1.53 Total: 10.43 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.40 Total: -43.17 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -1.87 Total: -35.35 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.10 -6.13 -43.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610404031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.611 kcal (2) G-P(sol) polarization free energy of solvation -37.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds