Wall clock time and date at job start Tue Mar 31 2020 13:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34197 * 125.79887 * 2 1 4 4 H 0.97004 * 125.38100 * 0.02562 * 3 2 1 5 5 C 1.37835 * 109.22759 * 179.83679 * 3 2 1 6 6 C 1.46643 * 125.84788 * 180.15642 * 5 3 2 7 7 O 1.21603 * 119.99909 * 180.32769 * 6 5 3 8 8 O 1.34873 * 120.00309 * 0.32223 * 6 5 3 9 9 C 1.36417 * 108.30274 * 0.42974 * 5 3 2 10 10 C 1.50694 * 126.50418 * 179.76531 * 9 5 3 11 11 C 1.38323 * 125.79899 * 180.31245 * 2 1 3 12 12 C 1.47256 * 126.46029 * 359.97254 * 11 2 1 13 13 O 1.21533 * 119.99455 * 90.03079 * 12 11 2 14 14 O 1.34755 * 120.00321 * 270.02818 * 12 11 2 15 15 C 1.45204 * 117.00338 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47670 * 180.02562 * 15 14 12 17 17 O 1.21281 * 119.99492 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00198 * 179.97438 * 16 15 14 19 19 C 1.46496 * 119.99974 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47355 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99586 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99917 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99817 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00427 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47355 * 89.99546 * 24 22 20 26 26 H 1.48504 * 109.47253 * 209.99990 * 24 22 20 27 27 H 1.48504 * 109.46708 * 329.99434 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68986 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69086 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69067 * 1 2 3 31 31 H 0.96697 * 116.99684 * 180.02562 * 8 6 5 32 32 H 1.09001 * 109.47494 * 269.97819 * 10 9 5 33 33 H 1.09000 * 109.47552 * 29.97577 * 10 9 5 34 34 H 1.08998 * 109.47296 * 149.97822 * 10 9 5 35 35 H 1.09005 * 109.46898 * 299.99972 * 15 14 12 36 36 H 1.08999 * 109.47236 * 59.99405 * 15 14 12 37 37 H 0.96997 * 119.99775 * 0.02562 * 18 16 15 38 38 H 1.09005 * 109.47182 * 300.00414 * 19 18 16 39 39 H 1.08999 * 109.47256 * 60.00033 * 19 18 16 40 40 H 0.97001 * 120.00102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2920 1.0884 0.0000 4 1 1.9791 2.0066 0.0004 5 6 3.6131 0.6953 0.0037 6 6 4.7752 1.5897 0.0081 7 8 5.8994 1.1259 0.0052 8 8 4.5974 2.9266 0.0154 9 6 3.6544 -0.6682 -0.0036 10 6 4.8922 -1.5276 -0.0078 11 6 2.3161 -1.1219 -0.0061 12 6 1.8674 -2.5244 -0.0132 13 8 1.6824 -3.0978 -1.0687 14 8 1.6620 -3.1721 1.1505 15 6 1.2207 -4.5529 1.0676 16 6 1.0444 -5.1084 2.4573 17 8 1.2690 -4.4095 3.4226 18 7 0.6371 -6.3818 2.6274 19 6 0.4662 -6.9220 3.9783 20 6 0.0081 -8.3551 3.8922 21 1 -0.1412 -8.8171 2.9276 22 6 -0.2203 -9.0762 5.0449 23 7 -0.6206 -10.3267 4.9697 24 14 0.0373 -8.2768 6.7134 25 1 -1.2281 -7.6392 7.1575 26 1 0.4439 -9.3098 7.6998 27 1 1.1011 -7.2459 6.6093 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 5.3935 3.4753 0.0177 32 1 5.1909 -1.7296 -1.0365 33 1 5.6982 -1.0064 0.5087 34 1 4.6831 -2.4685 0.5012 35 1 0.2708 -4.5994 0.5349 36 1 1.9663 -5.1411 0.5326 37 1 0.4578 -6.9409 1.8552 38 1 1.4162 -6.8759 4.5109 39 1 -0.2791 -6.3335 4.5134 40 1 -0.7810 -10.8343 5.7806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610404031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:12 Heat of formation + Delta-G solvation = -201.844551 kcal Electronic energy + Delta-G solvation = -26388.305021 eV Core-core repulsion = 22167.773035 eV Total energy + Delta-G solvation = -4220.531987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.98455 -41.48976 -40.71764 -40.25563 -37.47780 -37.21219 -36.18462 -34.45044 -34.26082 -33.00605 -31.13101 -29.48625 -28.65094 -28.09474 -25.31014 -24.01374 -23.22493 -21.71761 -21.24007 -20.59903 -19.83423 -19.27006 -18.57969 -18.51012 -17.96232 -17.76121 -17.05580 -16.91881 -16.75022 -16.45030 -15.94578 -15.77797 -15.67322 -14.89947 -14.81834 -14.44540 -14.38776 -14.32424 -14.16192 -13.91269 -13.77794 -13.65061 -13.34056 -13.28732 -13.07260 -12.78170 -12.69777 -12.65107 -11.98587 -11.92765 -11.90018 -11.70420 -11.65229 -10.96418 -10.91105 -10.13371 -10.02403 -9.46104 -8.38783 -6.46177 0.01222 0.76321 0.89677 1.34488 1.36523 1.42457 1.49253 1.53616 1.68511 1.87737 2.10971 2.29405 2.57284 2.96589 3.54662 3.61903 3.72320 3.78090 3.95619 4.06984 4.11077 4.29711 4.33407 4.56535 4.63769 4.67523 4.76462 4.87301 4.93545 5.02065 5.04395 5.17905 5.25127 5.26829 5.41777 5.49432 5.52385 6.07087 6.22550 6.51620 6.55210 6.74033 6.87531 7.13206 7.29132 8.75703 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.021957 B = 0.002264 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.924530 B =12366.750277 C =12654.163594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.150 3.850 3 N -0.492 5.492 4 H 0.447 0.553 5 C -0.058 4.058 6 C 0.564 3.436 7 O -0.530 6.530 8 O -0.507 6.507 9 C -0.029 4.029 10 C -0.100 4.100 11 C -0.250 4.250 12 C 0.556 3.444 13 O -0.515 6.515 14 O -0.338 6.338 15 C 0.054 3.946 16 C 0.506 3.494 17 O -0.578 6.578 18 N -0.697 5.697 19 C 0.232 3.768 20 C -0.547 4.547 21 H 0.062 0.938 22 C 0.026 3.974 23 N -0.930 5.930 24 Si 0.937 3.063 25 H -0.264 1.264 26 H -0.275 1.275 27 H -0.259 1.259 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.439 0.561 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.413 0.587 38 H 0.016 0.984 39 H 0.017 0.983 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.149 29.189 -13.720 32.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.024 3.976 3 N -0.089 5.089 4 H 0.291 0.709 5 C -0.167 4.167 6 C 0.409 3.591 7 O -0.421 6.421 8 O -0.322 6.322 9 C -0.037 4.037 10 C -0.157 4.157 11 C -0.257 4.257 12 C 0.399 3.601 13 O -0.403 6.403 14 O -0.253 6.253 15 C -0.023 4.023 16 C 0.292 3.708 17 O -0.458 6.458 18 N -0.348 5.348 19 C 0.109 3.891 20 C -0.585 4.585 21 H 0.080 0.920 22 C -0.174 4.174 23 N -0.569 5.569 24 Si 0.760 3.240 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.184 1.184 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.302 0.698 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.250 0.750 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.178 29.168 -13.228 32.443 hybrid contribution 0.408 -0.073 0.469 0.626 sum 5.586 29.095 -12.758 32.257 Atomic orbital electron populations 1.20818 0.83678 1.06086 1.05495 1.21063 0.95077 0.84150 0.97306 1.41409 1.03900 1.09672 1.53932 0.70940 1.18467 0.83147 0.91610 1.23438 1.19200 0.86528 0.81266 0.72066 1.90950 1.25376 1.77509 1.48225 1.84488 1.45110 1.17078 1.85504 1.19735 0.94024 0.91866 0.98032 1.20505 0.93769 0.98105 1.03350 1.18318 0.94070 0.89374 1.23959 1.20414 0.72403 0.86411 0.80872 1.90847 1.48178 1.68480 1.32813 1.86732 1.77685 1.26350 1.34550 1.22820 1.04711 0.80387 0.94383 1.20545 0.77180 0.82135 0.90974 1.90686 1.52115 1.59512 1.43459 1.45848 1.66537 1.11756 1.10658 1.19170 0.95845 0.92911 0.81179 1.21272 1.46820 0.95520 0.94868 0.91977 1.25595 0.93753 0.95106 1.02991 1.69979 1.46444 1.09998 1.30489 0.85866 0.79843 0.78832 0.79418 1.18863 1.20002 1.18357 0.87994 0.89825 0.86718 0.69770 0.89847 0.89607 0.91913 0.85268 0.85942 0.75033 0.96619 0.96482 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 10.24 71.24 0.73 -0.21 16 2 C 0.15 2.35 7.21 42.22 0.30 2.66 16 3 N -0.49 -5.96 6.01 -171.69 -1.03 -7.00 16 4 H 0.45 2.01 8.96 -92.71 -0.83 1.17 16 5 C -0.06 -1.06 7.02 39.97 0.28 -0.78 16 6 C 0.56 9.38 8.31 70.02 0.58 9.96 16 7 O -0.53 -11.97 15.48 19.50 0.30 -11.67 16 8 O -0.51 -4.10 13.44 -57.87 -0.78 -4.88 16 9 C -0.03 -0.68 6.21 -19.54 -0.12 -0.80 16 10 C -0.10 -2.30 9.63 71.23 0.69 -1.62 16 11 C -0.25 -5.88 6.01 -20.13 -0.12 -6.00 16 12 C 0.56 15.23 7.13 70.19 0.50 15.73 16 13 O -0.51 -15.39 16.90 19.73 0.33 -15.05 16 14 O -0.34 -10.25 9.77 -50.27 -0.49 -10.74 16 15 C 0.05 1.47 5.95 71.24 0.42 1.90 16 16 C 0.51 18.66 7.91 87.66 0.69 19.35 16 17 O -0.58 -26.41 16.50 15.77 0.26 -26.15 16 18 N -0.70 -26.80 5.55 -466.79 -2.59 -29.39 16 19 C 0.23 11.11 4.50 85.63 0.38 11.49 16 20 C -0.55 -29.57 9.83 25.60 0.25 -29.32 16 21 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 22 C 0.03 1.45 5.47 84.65 0.46 1.91 16 23 N -0.93 -55.00 13.96 21.45 0.30 -54.70 16 24 Si 0.94 43.43 27.47 68.60 1.88 45.31 16 25 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.26 -11.91 6.54 99.48 0.65 -11.26 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.95 7.93 -2.39 -0.02 0.93 16 30 H 0.11 0.26 8.14 -2.38 -0.02 0.25 16 31 H 0.44 -0.24 9.11 -74.06 -0.67 -0.92 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 1.99 6.41 -2.39 -0.02 1.98 16 34 H 0.06 1.50 8.05 -2.39 -0.02 1.48 16 35 H 0.13 2.82 8.14 -2.38 -0.02 2.80 16 36 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.41 13.51 8.32 -92.71 -0.77 12.74 16 38 H 0.02 0.80 7.20 -2.38 -0.02 0.78 16 39 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 40 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -80.81 361.65 2.05 -78.76 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -1.19 Total: 11.24 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 5.06 Total: 24.27 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -3.32 Total: -91.09 kcal Atomic # 8 Polarization: -68.12 SS G_CDS: -0.37 Total: -68.49 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.31 kcal Total: -80.81 2.05 -78.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610404031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.087 kcal (2) G-P(sol) polarization free energy of solvation -80.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds