Wall clock time and date at job start Tue Mar 31 2020 13:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37755 * 120.01078 * 2 1 4 4 C 1.39220 * 120.20491 * 180.02562 * 3 2 1 5 5 S 1.76191 * 131.18480 * 179.97438 * 4 3 2 6 6 C 1.75806 * 90.45253 * 180.02562 * 5 4 3 7 7 N 1.38109 * 124.81835 * 179.97438 * 6 5 4 8 8 C 1.39805 * 120.00003 * 354.36331 * 7 6 5 9 9 C 1.39323 * 119.95481 * 142.91607 * 8 7 6 10 10 C 1.38477 * 120.42714 * 180.02562 * 9 8 7 11 11 C 1.37693 * 120.32427 * 0.23852 * 10 9 8 12 12 C 1.40749 * 119.88832 * 359.47019 * 11 10 9 13 13 C 1.41414 * 120.20478 * 180.29554 * 12 11 10 14 14 H 1.08003 * 119.99422 * 150.31422 * 13 12 11 15 15 C 1.39918 * 120.00314 * 330.31758 * 13 12 11 16 16 N 1.30834 * 119.99770 * 346.85466 * 15 13 12 17 17 Si 1.86796 * 120.00138 * 166.86140 * 15 13 12 18 18 H 1.48502 * 109.47371 * 59.99833 * 17 15 13 19 19 H 1.48508 * 109.47353 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47351 * 299.99702 * 17 15 13 21 21 C 1.38279 * 119.94567 * 322.89144 * 8 7 6 22 22 N 1.28899 * 110.36840 * 0.24112 * 6 5 4 23 23 C 1.34784 * 117.88545 * 359.55248 * 22 6 5 24 24 C 1.41080 * 128.74052 * 180.19903 * 23 22 6 25 25 C 1.50690 * 119.78119 * 0.27313 * 24 23 22 26 26 C 1.37239 * 120.43035 * 180.31890 * 24 23 22 27 27 H 1.08999 * 109.47067 * 90.00287 * 1 2 3 28 28 H 1.09002 * 109.47075 * 210.00426 * 1 2 3 29 29 H 1.09002 * 109.46630 * 329.99897 * 1 2 3 30 30 H 1.08006 * 119.90060 * 0.04010 * 3 2 1 31 31 H 0.97002 * 120.00309 * 174.35961 * 7 6 5 32 32 H 1.08002 * 119.78788 * 359.97438 * 9 8 7 33 33 H 1.08001 * 119.83897 * 179.97438 * 10 9 8 34 34 H 1.08002 * 120.05266 * 179.71998 * 11 10 9 35 35 H 0.97005 * 119.99836 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.16768 * 359.97438 * 21 8 7 37 37 H 1.09008 * 109.47213 * 270.04002 * 25 24 23 38 38 H 1.09000 * 109.47517 * 30.04402 * 25 24 23 39 39 H 1.09005 * 109.47006 * 150.04756 * 25 24 23 40 40 H 1.07994 * 119.69891 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1929 0.0000 4 6 3.5883 1.1976 -0.0005 5 16 4.7440 2.5275 -0.0013 6 6 6.0801 1.3848 -0.0023 7 7 7.4163 1.7340 -0.0038 8 6 7.7879 3.0764 -0.1234 9 6 8.8835 3.5610 0.5878 10 6 9.2599 4.8891 0.4770 11 6 8.5516 5.7470 -0.3344 12 6 7.4462 5.2703 -1.0638 13 6 6.7179 6.1441 -1.9039 14 1 6.2245 5.7600 -2.7845 15 6 6.6365 7.5062 -1.5944 16 7 7.0049 7.9317 -0.4133 17 14 6.0018 8.7170 -2.8673 18 1 4.6137 8.3522 -3.2486 19 1 6.0136 10.0877 -2.2959 20 1 6.8728 8.6737 -4.0692 21 6 7.0677 3.9211 -0.9480 22 7 5.6356 0.1749 -0.0072 23 6 4.3000 -0.0061 -0.0011 24 6 3.5729 -1.2151 -0.0007 25 6 4.3079 -2.5306 -0.0013 26 6 2.2006 -1.2009 -0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6546 2.1274 0.0007 31 1 8.0970 1.0478 0.0783 32 1 9.4424 2.8968 1.2304 33 1 10.1105 5.2547 1.0330 34 1 8.8463 6.7830 -0.4141 35 1 6.9488 8.8761 -0.1988 36 1 6.2187 3.5465 -1.5004 37 1 4.4850 -2.8473 -1.0292 38 1 5.2621 -2.4139 0.5125 39 1 3.7082 -3.2821 0.5122 40 1 1.6558 -2.1334 -0.0006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001612391337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:46 Heat of formation + Delta-G solvation = 63.623367 kcal Electronic energy + Delta-G solvation = -23406.275574 eV Core-core repulsion = 20083.150025 eV Total energy + Delta-G solvation = -3323.125549 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.05779 -38.55620 -36.99617 -35.00895 -33.39130 -32.94912 -30.75001 -30.06084 -28.25958 -27.16443 -25.92814 -25.39394 -23.64573 -22.02143 -21.29999 -20.37927 -20.16121 -18.26106 -17.10161 -16.99104 -15.84205 -15.57279 -15.04241 -14.91728 -14.79257 -14.42832 -14.15479 -13.79376 -13.32682 -13.27253 -13.06566 -12.99100 -12.56212 -12.48615 -12.21555 -12.08383 -11.89701 -11.61898 -11.36896 -11.22911 -11.21699 -10.82855 -10.63771 -10.43479 -10.09270 -9.95923 -9.62774 -9.40076 -9.26458 -9.24394 -7.96035 -7.66914 -7.61792 -6.88105 -6.79876 -4.54630 0.87177 1.36283 1.46232 2.13529 2.47448 2.68801 2.94148 3.01716 3.04409 3.11847 3.32967 3.85961 3.89744 4.48571 4.69522 4.83491 4.90468 5.22513 5.32308 5.46416 5.51953 5.53624 5.56939 5.70746 5.74111 5.89438 5.91767 6.05126 6.16263 6.20719 6.35717 6.47868 6.62310 6.68853 6.72782 6.77463 6.84823 6.96094 7.08215 7.41333 7.47170 7.71215 7.84610 7.88582 8.03409 8.26923 8.46289 8.73397 8.75588 10.08948 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.003635 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.047472 B = 7701.485583 C = 9255.701275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C -0.063 4.063 4 C -0.216 4.216 5 S 0.112 5.888 6 C 0.377 3.623 7 N -0.620 5.620 8 C 0.156 3.844 9 C -0.250 4.250 10 C -0.086 4.086 11 C -0.161 4.161 12 C 0.135 3.865 13 C -0.460 4.460 14 H 0.080 0.920 15 C 0.077 3.923 16 N -0.794 5.794 17 Si 0.911 3.089 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.263 1.263 21 C -0.250 4.250 22 N -0.560 5.560 23 C 0.130 3.870 24 C -0.058 4.058 25 C -0.104 4.104 26 C -0.106 4.106 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.413 0.587 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.283 0.717 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 -11.073 1.204 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.103 4.103 3 C -0.086 4.086 4 C -0.336 4.336 5 S 0.364 5.636 6 C 0.001 3.999 7 N -0.250 5.250 8 C 0.063 3.937 9 C -0.272 4.272 10 C -0.105 4.105 11 C -0.181 4.181 12 C 0.132 3.868 13 C -0.489 4.489 14 H 0.098 0.902 15 C -0.141 4.141 16 N -0.419 5.419 17 Si 0.735 3.265 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.274 4.274 22 N -0.286 5.286 23 C 0.009 3.991 24 C -0.061 4.061 25 C -0.160 4.160 26 C -0.127 4.127 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.141 0.859 31 H 0.252 0.748 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.827 -10.015 1.349 12.195 hybrid contribution -0.298 -0.399 -0.401 0.639 sum -7.125 -10.413 0.948 12.653 Atomic orbital electron populations 1.20698 0.90895 1.02551 1.02126 1.19622 0.95788 0.92464 1.02405 1.20066 0.90301 0.97989 1.00258 1.24024 0.99407 0.97746 1.12384 1.86162 0.94717 1.04739 1.78016 1.23811 0.90956 0.90499 0.94602 1.41403 1.00980 1.07887 1.74722 1.17496 0.97609 0.80455 0.98132 1.20074 1.02967 0.96381 1.07766 1.20534 0.98653 0.92708 0.98588 1.21392 0.96070 0.99568 1.01044 1.17363 0.89739 0.89908 0.89835 1.19545 1.28440 0.91908 1.09005 0.90205 1.25885 0.93567 0.99266 0.95414 1.69784 1.35711 1.17282 1.19083 0.86319 0.80284 0.78713 0.81207 1.18866 1.20235 1.18741 1.20918 1.04154 0.96024 1.06255 1.66227 1.13281 1.19363 1.29748 1.18543 0.86281 0.93031 1.01281 1.19333 0.92679 0.92769 1.01321 1.20644 1.00412 0.92874 1.02114 1.20544 0.92559 0.97573 1.01987 0.91375 0.91677 0.91663 0.85903 0.74839 0.88690 0.88484 0.86196 0.90611 0.87536 0.91491 0.90980 0.92013 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.10 -1.25 5.88 -104.63 -0.62 -1.87 16 3 C -0.06 -0.94 9.71 -39.39 -0.38 -1.32 16 4 C -0.22 -3.80 6.52 -38.62 -0.25 -4.06 16 5 S 0.11 2.16 19.62 -107.50 -2.11 0.05 16 6 C 0.38 7.28 8.04 -88.80 -0.71 6.56 16 7 N -0.62 -11.58 5.46 -10.82 -0.06 -11.64 16 8 C 0.16 3.30 6.20 -83.80 -0.52 2.78 16 9 C -0.25 -5.15 9.97 -39.09 -0.39 -5.54 16 10 C -0.09 -1.85 10.02 -39.69 -0.40 -2.25 16 11 C -0.16 -3.89 8.65 -38.83 -0.34 -4.23 16 12 C 0.13 3.38 5.53 -106.85 -0.59 2.79 16 13 C -0.46 -11.58 9.05 -37.74 -0.34 -11.92 16 14 H 0.08 1.95 7.88 -52.48 -0.41 1.54 16 15 C 0.08 1.84 5.20 -17.35 -0.09 1.75 16 16 N -0.79 -19.50 11.04 55.55 0.61 -18.89 16 17 Si 0.91 17.95 29.58 -169.99 -5.03 12.92 16 18 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 C -0.25 -5.81 7.89 -38.67 -0.31 -6.12 16 22 N -0.56 -10.52 10.31 -11.13 -0.11 -10.64 16 23 C 0.13 2.30 6.71 -84.90 -0.57 1.73 16 24 C -0.06 -0.85 5.93 -103.91 -0.62 -1.46 16 25 C -0.10 -1.25 9.94 36.00 0.36 -0.89 16 26 C -0.11 -1.32 9.28 -39.78 -0.37 -1.69 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.41 6.67 8.95 -40.82 -0.37 6.30 16 32 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.12 2.98 6.38 -52.49 -0.33 2.65 16 35 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 36 H 0.11 2.47 5.94 -49.53 -0.29 2.17 16 37 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 39 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -27.02 349.98 -11.94 -38.97 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -4.75 Total: 10.27 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -5.77 Total: -26.32 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.44 Total: -41.17 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.11 Total: 0.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.02 -11.94 -38.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001612391337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.589 kcal (2) G-P(sol) polarization free energy of solvation -27.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds