Wall clock time and date at job start Tue Mar 31 2020 13:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37755 * 120.01078 * 2 1 4 4 C 1.39220 * 120.20491 * 180.02562 * 3 2 1 5 5 S 1.76191 * 131.18480 * 179.97438 * 4 3 2 6 6 C 1.75806 * 90.45253 * 180.02562 * 5 4 3 7 7 N 1.38109 * 124.81835 * 179.97438 * 6 5 4 8 8 C 1.39805 * 120.00003 * 354.36331 * 7 6 5 9 9 C 1.39323 * 119.95481 * 142.91607 * 8 7 6 10 10 C 1.38477 * 120.42714 * 180.02562 * 9 8 7 11 11 C 1.37693 * 120.32427 * 0.23852 * 10 9 8 12 12 C 1.40749 * 119.88832 * 359.47019 * 11 10 9 13 13 C 1.41414 * 120.20478 * 180.29554 * 12 11 10 14 14 H 1.08003 * 119.99422 * 150.31422 * 13 12 11 15 15 C 1.39918 * 120.00314 * 330.31758 * 13 12 11 16 16 N 1.30834 * 119.99770 * 346.85466 * 15 13 12 17 17 Si 1.86796 * 120.00138 * 166.86140 * 15 13 12 18 18 H 1.48502 * 109.47371 * 59.99833 * 17 15 13 19 19 H 1.48508 * 109.47353 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47351 * 299.99702 * 17 15 13 21 21 C 1.38279 * 119.94567 * 322.89144 * 8 7 6 22 22 N 1.28899 * 110.36840 * 0.24112 * 6 5 4 23 23 C 1.34784 * 117.88545 * 359.55248 * 22 6 5 24 24 C 1.41080 * 128.74052 * 180.19903 * 23 22 6 25 25 C 1.50690 * 119.78119 * 0.27313 * 24 23 22 26 26 C 1.37239 * 120.43035 * 180.31890 * 24 23 22 27 27 H 1.08999 * 109.47067 * 90.00287 * 1 2 3 28 28 H 1.09002 * 109.47075 * 210.00426 * 1 2 3 29 29 H 1.09002 * 109.46630 * 329.99897 * 1 2 3 30 30 H 1.08006 * 119.90060 * 0.04010 * 3 2 1 31 31 H 0.97002 * 120.00309 * 174.35961 * 7 6 5 32 32 H 1.08002 * 119.78788 * 359.97438 * 9 8 7 33 33 H 1.08001 * 119.83897 * 179.97438 * 10 9 8 34 34 H 1.08002 * 120.05266 * 179.71998 * 11 10 9 35 35 H 0.97005 * 119.99836 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.16768 * 359.97438 * 21 8 7 37 37 H 1.09008 * 109.47213 * 270.04002 * 25 24 23 38 38 H 1.09000 * 109.47517 * 30.04402 * 25 24 23 39 39 H 1.09005 * 109.47006 * 150.04756 * 25 24 23 40 40 H 1.07994 * 119.69891 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1929 0.0000 4 6 3.5883 1.1976 -0.0005 5 16 4.7440 2.5275 -0.0013 6 6 6.0801 1.3848 -0.0023 7 7 7.4163 1.7340 -0.0038 8 6 7.7879 3.0764 -0.1234 9 6 8.8835 3.5610 0.5878 10 6 9.2599 4.8891 0.4770 11 6 8.5516 5.7470 -0.3344 12 6 7.4462 5.2703 -1.0638 13 6 6.7179 6.1441 -1.9039 14 1 6.2245 5.7600 -2.7845 15 6 6.6365 7.5062 -1.5944 16 7 7.0049 7.9317 -0.4133 17 14 6.0018 8.7170 -2.8673 18 1 4.6137 8.3522 -3.2486 19 1 6.0136 10.0877 -2.2959 20 1 6.8728 8.6737 -4.0692 21 6 7.0677 3.9211 -0.9480 22 7 5.6356 0.1749 -0.0072 23 6 4.3000 -0.0061 -0.0011 24 6 3.5729 -1.2151 -0.0007 25 6 4.3079 -2.5306 -0.0013 26 6 2.2006 -1.2009 -0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6546 2.1274 0.0007 31 1 8.0970 1.0478 0.0783 32 1 9.4424 2.8968 1.2304 33 1 10.1105 5.2547 1.0330 34 1 8.8463 6.7830 -0.4141 35 1 6.9488 8.8761 -0.1988 36 1 6.2187 3.5465 -1.5004 37 1 4.4850 -2.8473 -1.0292 38 1 5.2621 -2.4139 0.5125 39 1 3.7082 -3.2821 0.5122 40 1 1.6558 -2.1334 -0.0006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001612391337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:45 Heat of formation + Delta-G solvation = 52.122902 kcal Electronic energy + Delta-G solvation = -23406.774271 eV Core-core repulsion = 20083.150025 eV Total energy + Delta-G solvation = -3323.624246 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.31583 -40.15604 -38.39233 -36.54786 -35.03028 -34.06880 -32.01285 -31.76829 -29.85153 -28.12100 -27.44664 -26.87739 -24.95235 -23.47663 -22.94921 -21.79834 -21.49517 -19.83166 -18.63073 -18.36851 -17.45303 -16.94548 -16.62350 -16.49889 -16.21424 -15.75031 -15.31533 -15.21949 -14.73024 -14.51685 -14.35415 -14.11942 -13.97581 -13.72140 -13.49519 -13.31347 -13.16498 -12.85065 -12.79535 -12.69608 -12.49244 -12.36173 -12.22474 -11.94616 -11.62588 -11.49306 -11.21641 -10.94096 -10.71758 -10.69255 -9.50623 -9.38879 -8.96192 -8.64829 -8.33538 -6.42515 -0.43386 0.04591 0.20845 0.70603 0.88114 1.01584 1.38966 1.46223 1.49950 1.55365 1.85039 2.21329 2.68564 2.72427 3.44994 3.64155 3.73739 3.91660 4.25664 4.30433 4.36531 4.45747 4.52104 4.63933 4.68332 4.81537 4.90917 4.93748 4.95556 4.97825 5.00893 5.09838 5.12643 5.20958 5.28944 5.36622 5.45202 5.57404 5.70011 5.75982 5.92310 5.98628 6.05417 6.22273 6.41203 6.60671 6.80328 6.90737 6.94729 8.33408 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.003635 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.047472 B = 7701.485583 C = 9255.701275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.080 4.080 3 C -0.086 4.086 4 C -0.220 4.220 5 S 0.059 5.941 6 C 0.362 3.638 7 N -0.617 5.617 8 C 0.163 3.837 9 C -0.244 4.244 10 C -0.083 4.083 11 C -0.186 4.186 12 C 0.109 3.891 13 C -0.497 4.497 14 H 0.072 0.928 15 C 0.040 3.960 16 N -0.824 5.824 17 Si 0.978 3.022 18 H -0.263 1.263 19 H -0.266 1.266 20 H -0.260 1.260 21 C -0.261 4.261 22 N -0.554 5.554 23 C 0.088 3.912 24 C -0.062 4.062 25 C -0.101 4.101 26 C -0.099 4.099 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.425 0.575 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.289 0.711 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.121 -13.432 1.529 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.084 4.084 3 C -0.109 4.109 4 C -0.339 4.339 5 S 0.309 5.691 6 C -0.014 4.014 7 N -0.249 5.249 8 C 0.070 3.930 9 C -0.265 4.265 10 C -0.102 4.102 11 C -0.206 4.206 12 C 0.106 3.894 13 C -0.527 4.527 14 H 0.090 0.910 15 C -0.175 4.175 16 N -0.450 5.450 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.190 1.190 20 H -0.184 1.184 21 C -0.285 4.285 22 N -0.280 5.280 23 C -0.032 4.032 24 C -0.066 4.066 25 C -0.157 4.157 26 C -0.120 4.120 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.266 0.734 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.728 -12.427 1.683 15.279 hybrid contribution 0.111 0.042 -0.427 0.443 sum -8.618 -12.385 1.256 15.141 Atomic orbital electron populations 1.20818 0.87733 1.04171 1.03502 1.20164 0.97933 0.91507 0.98782 1.20397 0.89342 0.99749 1.01438 1.24090 1.00176 0.96385 1.13253 1.86185 0.96763 1.07157 1.79009 1.23797 0.90900 0.90465 0.96225 1.41162 1.01192 1.07142 1.75409 1.17514 0.97186 0.81314 0.97026 1.20440 1.02492 0.96475 1.07122 1.20851 0.98880 0.92788 0.97662 1.21359 0.96950 0.99492 1.02812 1.17660 0.90379 0.90817 0.90574 1.19740 1.30047 0.93325 1.09572 0.90971 1.26633 0.93427 1.00311 0.97112 1.69834 1.36717 1.17950 1.20468 0.85309 0.79495 0.76693 0.78615 1.18746 1.18977 1.18385 1.20940 1.04565 0.96002 1.07002 1.66202 1.14310 1.18862 1.28616 1.19011 0.85962 0.94390 1.03800 1.19820 0.93803 0.92684 1.00286 1.20685 0.99940 0.92293 1.02812 1.21066 0.91784 0.99261 0.99846 0.89905 0.89207 0.91023 0.84972 0.73442 0.85434 0.85572 0.87646 0.90002 0.88328 0.90734 0.92618 0.88753 0.81457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 2 C -0.08 -1.76 5.88 -19.87 -0.12 -1.88 16 3 C -0.09 -2.47 9.71 22.39 0.22 -2.26 16 4 C -0.22 -7.84 6.52 22.89 0.15 -7.69 16 5 S 0.06 2.37 19.62 -56.49 -1.11 1.27 16 6 C 0.36 14.41 8.04 179.71 1.45 15.86 16 7 N -0.62 -23.39 5.46 -188.14 -1.03 -24.42 16 8 C 0.16 7.05 6.20 38.14 0.24 7.29 16 9 C -0.24 -9.89 9.97 22.59 0.23 -9.66 16 10 C -0.08 -3.57 10.02 22.20 0.22 -3.35 16 11 C -0.19 -9.35 8.65 22.75 0.20 -9.15 16 12 C 0.11 5.75 5.53 -21.31 -0.12 5.63 16 13 C -0.50 -26.54 9.05 23.46 0.21 -26.32 16 14 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 15 C 0.04 2.00 5.20 85.25 0.44 2.44 16 16 N -0.82 -42.07 11.04 21.82 0.24 -41.83 16 17 Si 0.98 37.82 29.58 68.60 2.03 39.85 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 19 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 21 C -0.26 -12.80 7.89 22.86 0.18 -12.62 16 22 N -0.55 -21.09 10.31 -189.14 -1.95 -23.04 16 23 C 0.09 3.09 6.71 39.77 0.27 3.36 16 24 C -0.06 -1.69 5.93 -19.41 -0.12 -1.81 16 25 C -0.10 -2.15 9.94 71.23 0.71 -1.44 16 26 C -0.10 -2.09 9.28 22.14 0.21 -1.88 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 29 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 30 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 31 H 0.43 13.64 8.95 -92.71 -0.83 12.81 16 32 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 33 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.11 5.51 6.38 -2.91 -0.02 5.50 16 35 H 0.29 13.39 8.30 -92.70 -0.77 12.62 16 36 H 0.10 4.90 5.94 -4.79 -0.03 4.87 16 37 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.05 1.38 7.92 -2.39 -0.02 1.36 16 39 H 0.09 1.39 8.08 -2.38 -0.02 1.37 16 40 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -62.38 349.98 3.50 -58.89 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.24 Total: 33.49 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 5.07 Total: -44.20 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -2.74 Total: -89.29 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.11 Total: 1.27 kcal Total: -62.38 3.50 -58.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001612391337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.009 kcal (2) G-P(sol) polarization free energy of solvation -62.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds