Wall clock time and date at job start Tue Mar 31 2020 13:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31290 * 1 3 3 Si 1.86801 * 119.99953 * 2 1 4 4 H 1.48498 * 109.47102 * 269.99722 * 3 2 1 5 5 H 1.48500 * 109.47274 * 30.00243 * 3 2 1 6 6 H 1.48500 * 109.46953 * 149.99857 * 3 2 1 7 7 C 1.38986 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00105 * 179.97438 * 7 2 1 9 9 N 1.37319 * 120.00118 * 0.02562 * 7 2 1 10 10 C 1.36502 * 126.07348 * 180.02562 * 9 7 2 11 11 C 1.35682 * 107.50826 * 180.02562 * 10 9 7 12 12 N 1.40564 * 126.07994 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99769 * 179.97438 * 12 11 10 14 14 O 1.21634 * 120.00362 * 0.02562 * 13 12 11 15 15 C 1.47412 * 119.99964 * 179.97438 * 13 12 11 16 16 C 1.41365 * 126.40953 * 0.03034 * 15 13 12 17 17 N 1.30454 * 108.08113 * 179.97438 * 16 15 13 18 18 N 1.39931 * 108.91800 * 0.02562 * 17 16 15 19 19 C 1.39911 * 125.77808 * 180.02562 * 18 17 16 20 20 C 1.39335 * 120.85577 * 179.69259 * 19 18 17 21 21 C 1.38006 * 119.07771 * 179.75785 * 20 19 18 22 22 N 1.31934 * 120.83204 * 0.53346 * 21 20 19 23 23 C 1.31937 * 121.88971 * 359.73944 * 22 21 20 24 24 C 1.38012 * 120.83085 * 359.97438 * 23 22 21 25 25 C 1.34626 * 108.44698 * 359.97438 * 18 17 16 26 26 C 1.40656 * 107.83420 * 0.23696 * 11 10 9 27 27 N 1.30910 * 108.38937 * 359.59095 * 26 11 10 28 28 H 0.96997 * 120.00175 * 0.02562 * 1 2 3 29 29 H 1.08005 * 126.24374 * 0.03503 * 10 9 7 30 30 H 0.96994 * 119.99955 * 359.97438 * 12 11 10 31 31 H 1.08004 * 125.95607 * 0.24131 * 16 15 13 32 32 H 1.08000 * 120.45519 * 0.02562 * 20 19 18 33 33 H 1.07997 * 119.58133 * 180.27102 * 21 20 19 34 34 H 1.07997 * 119.59023 * 180.02562 * 23 22 21 35 35 H 1.07997 * 120.46195 * 180.02562 * 24 23 22 36 36 H 1.07996 * 126.31415 * 179.97438 * 25 18 17 37 37 H 1.07994 * 125.80404 * 179.75638 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4944 2.0464 -1.4001 5 1 1.4444 2.6527 0.7001 6 1 3.5444 1.4402 0.7001 7 6 2.0078 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0001 9 7 1.3213 -2.3929 0.0005 10 6 1.8749 -3.6406 0.0015 11 6 0.8577 -4.5385 0.0006 12 7 0.9889 -5.9380 0.0006 13 6 -0.1103 -6.7179 0.0001 14 8 -1.2159 -6.2107 -0.0009 15 6 0.0273 -8.1855 -0.0005 16 6 1.2383 -8.9148 0.0001 17 7 0.9454 -10.1860 -0.0002 18 7 -0.4464 -10.3309 -0.0014 19 6 -1.1424 -11.5446 -0.0015 20 6 -2.5355 -11.5695 0.0036 21 6 -3.1847 -12.7873 -0.0018 22 7 -2.5030 -13.9169 -0.0010 23 6 -1.1837 -13.9349 -0.0003 24 6 -0.4603 -12.7595 -0.0008 25 6 -1.0023 -9.1048 -0.0014 26 6 -0.3513 -3.8198 -0.0066 27 7 -0.0716 -2.5409 -0.0009 28 1 -0.4850 0.8400 -0.0004 29 1 2.9301 -3.8710 0.0030 30 1 1.8705 -6.3425 0.0010 31 1 2.2326 -8.4930 0.0046 32 1 -3.0995 -10.6484 0.0073 33 1 -4.2642 -12.8161 -0.0023 34 1 -0.6633 -14.8812 -0.0001 35 1 0.6194 -12.7812 -0.0006 36 1 -2.0590 -8.8817 -0.0026 37 1 -1.3419 -4.2498 -0.0128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625845763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:53 Heat of formation + Delta-G solvation = 177.157968 kcal Electronic energy + Delta-G solvation = -24710.756193 eV Core-core repulsion = 20878.553410 eV Total energy + Delta-G solvation = -3832.202782 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.07222 -40.35353 -39.75058 -38.29869 -34.79107 -34.21152 -33.14401 -31.97008 -30.76943 -30.55965 -30.06785 -27.75893 -25.30606 -24.41745 -24.27735 -22.57819 -21.43725 -20.93680 -20.07981 -19.44054 -18.85204 -17.39692 -16.75633 -16.50683 -16.24063 -15.91881 -15.48469 -15.28502 -15.16035 -14.59981 -14.50633 -14.24888 -14.14053 -13.99707 -13.46237 -13.14403 -13.10712 -12.83189 -12.29748 -11.68323 -11.50809 -11.33902 -11.30741 -11.25042 -10.94028 -10.53876 -10.18611 -10.10114 -9.75229 -9.65303 -9.30180 -9.17393 -8.81088 -8.81001 -8.05808 -6.69513 -6.55931 -4.22690 0.20189 0.57870 1.62949 1.75812 1.96104 2.95003 3.04806 3.09935 3.31670 3.38874 3.54017 3.80681 3.82967 3.95497 3.99897 4.20072 4.42505 4.46793 4.47683 4.63085 4.76178 4.88906 5.01490 5.02178 5.07061 5.23234 5.26956 5.53540 5.54615 6.00468 6.05249 6.24475 6.46923 6.53806 6.89810 6.95533 7.08431 7.14181 7.23766 7.45202 7.85832 8.17827 8.27717 8.63013 8.84962 9.37689 9.66946 10.40078 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.050200 B = 0.001988 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.632292 B =14079.020245 C =14626.807521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.143 5.143 10 C -0.083 4.083 11 C -0.059 4.059 12 N -0.616 5.616 13 C 0.575 3.425 14 O -0.540 6.540 15 C -0.255 4.255 16 C 0.095 3.905 17 N -0.290 5.290 18 N -0.323 5.323 19 C 0.208 3.792 20 C -0.196 4.196 21 C 0.129 3.871 22 N -0.494 5.494 23 C 0.124 3.876 24 C -0.174 4.174 25 C 0.122 3.878 26 C -0.032 4.032 27 N -0.261 5.261 28 H 0.275 0.725 29 H 0.146 0.854 30 H 0.396 0.604 31 H 0.200 0.800 32 H 0.146 0.854 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.151 0.849 36 H 0.195 0.805 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 -21.918 0.000 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.234 4.234 11 C -0.164 4.164 12 N -0.257 5.257 13 C 0.362 3.638 14 O -0.418 6.418 15 C -0.269 4.269 16 C -0.095 4.095 17 N -0.107 5.107 18 N -0.097 5.097 19 C 0.107 3.893 20 C -0.219 4.219 21 C -0.028 4.028 22 N -0.204 5.204 23 C -0.033 4.033 24 C -0.196 4.196 25 C -0.023 4.023 26 C -0.207 4.207 27 N -0.092 5.092 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.229 0.771 31 H 0.217 0.783 32 H 0.164 0.836 33 H 0.185 0.815 34 H 0.183 0.817 35 H 0.168 0.832 36 H 0.211 0.789 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.076 -22.219 0.009 22.245 hybrid contribution 1.542 1.361 -0.007 2.057 sum 0.466 -20.858 0.001 20.863 Atomic orbital electron populations 1.70213 1.06122 1.27980 1.35313 1.25642 0.95710 1.00272 0.95516 0.85831 0.79392 0.79984 0.78960 1.19601 1.20097 1.18813 1.19868 0.91656 0.80547 1.53420 0.86609 1.44551 1.04055 1.03300 1.39105 1.21252 0.96829 0.85357 1.19971 1.17226 0.94363 0.80980 1.23841 1.42221 1.07862 1.04507 1.71068 1.16910 0.84547 0.83946 0.78431 1.90686 1.25616 1.74284 1.51259 1.20514 0.92425 0.94875 1.19117 1.24363 0.99661 0.89845 0.95603 1.77225 0.88904 1.19547 1.24976 1.45545 1.05217 1.03725 1.55174 1.17828 0.90697 0.83619 0.97200 1.21989 0.91931 1.01760 1.06197 1.22697 1.00790 0.86259 0.93063 1.67720 1.09085 1.30648 1.12962 1.22764 0.89532 0.97744 0.93271 1.21962 1.02751 0.90983 1.03880 1.23049 1.00556 0.82798 0.95878 1.24126 0.98067 0.90704 1.07830 1.78262 0.90120 1.15087 1.25710 0.91462 0.83653 0.77111 0.78330 0.83578 0.81516 0.81703 0.83169 0.78857 0.80671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.40 11.81 55.49 0.66 -20.75 16 2 C 0.05 1.17 5.50 -17.51 -0.10 1.08 16 3 Si 0.93 18.78 29.55 -169.99 -5.02 13.76 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.32 -8.46 10.25 -14.82 -0.15 -8.61 16 8 H 0.12 2.70 7.83 -52.48 -0.41 2.29 16 9 N -0.14 -3.87 3.74 -11.41 -0.04 -3.92 16 10 C -0.08 -1.92 11.49 -16.39 -0.19 -2.10 16 11 C -0.06 -1.32 6.90 -83.85 -0.58 -1.90 16 12 N -0.62 -10.60 5.46 -10.97 -0.06 -10.66 16 13 C 0.58 9.92 7.78 -12.53 -0.10 9.83 16 14 O -0.54 -11.28 14.05 5.25 0.07 -11.21 16 15 C -0.26 -3.36 6.13 -105.05 -0.64 -4.00 16 16 C 0.09 1.02 11.50 -16.95 -0.19 0.83 16 17 N -0.29 -3.36 11.87 30.88 0.37 -3.00 16 18 N -0.32 -3.60 3.76 -10.02 -0.04 -3.64 16 19 C 0.21 1.98 6.73 -83.36 -0.56 1.42 16 20 C -0.20 -1.50 9.52 -39.26 -0.37 -1.87 16 21 C 0.13 0.92 11.17 -17.59 -0.20 0.73 16 22 N -0.49 -4.26 10.36 -13.32 -0.14 -4.40 16 23 C 0.12 0.91 11.17 -17.59 -0.20 0.72 16 24 C -0.17 -1.45 9.73 -39.26 -0.38 -1.84 16 25 C 0.12 1.42 10.64 -16.40 -0.17 1.24 16 26 C -0.03 -0.83 10.85 -17.03 -0.18 -1.01 16 27 N -0.26 -7.53 10.40 30.80 0.32 -7.21 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.15 2.76 8.06 -52.48 -0.42 2.34 16 30 H 0.40 5.08 7.78 -40.82 -0.32 4.76 16 31 H 0.20 1.41 7.50 -52.48 -0.39 1.02 16 32 H 0.15 0.84 6.85 -52.49 -0.36 0.48 16 33 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16 34 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.15 1.18 7.78 -52.49 -0.41 0.77 16 36 H 0.19 1.82 7.09 -52.49 -0.37 1.45 16 37 H 0.18 4.51 5.91 -52.49 -0.31 4.20 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -35.82 334.90 -5.83 -41.65 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -2.98 Total: 9.82 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -4.02 Total: -5.49 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 1.06 Total: -53.57 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.21 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.82 -5.83 -41.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625845763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.809 kcal (2) G-P(sol) polarization free energy of solvation -35.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds