Wall clock time and date at job start Tue Mar 31 2020 13:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31290 * 1 3 3 Si 1.86801 * 119.99953 * 2 1 4 4 H 1.48498 * 109.47102 * 269.99722 * 3 2 1 5 5 H 1.48500 * 109.47274 * 30.00243 * 3 2 1 6 6 H 1.48500 * 109.46953 * 149.99857 * 3 2 1 7 7 C 1.38986 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00105 * 179.97438 * 7 2 1 9 9 N 1.37319 * 120.00118 * 0.02562 * 7 2 1 10 10 C 1.36502 * 126.07348 * 180.02562 * 9 7 2 11 11 C 1.35682 * 107.50826 * 180.02562 * 10 9 7 12 12 N 1.40564 * 126.07994 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99769 * 179.97438 * 12 11 10 14 14 O 1.21634 * 120.00362 * 0.02562 * 13 12 11 15 15 C 1.47412 * 119.99964 * 179.97438 * 13 12 11 16 16 C 1.41365 * 126.40953 * 0.03034 * 15 13 12 17 17 N 1.30454 * 108.08113 * 179.97438 * 16 15 13 18 18 N 1.39931 * 108.91800 * 0.02562 * 17 16 15 19 19 C 1.39911 * 125.77808 * 180.02562 * 18 17 16 20 20 C 1.39335 * 120.85577 * 179.69259 * 19 18 17 21 21 C 1.38006 * 119.07771 * 179.75785 * 20 19 18 22 22 N 1.31934 * 120.83204 * 0.53346 * 21 20 19 23 23 C 1.31937 * 121.88971 * 359.73944 * 22 21 20 24 24 C 1.38012 * 120.83085 * 359.97438 * 23 22 21 25 25 C 1.34626 * 108.44698 * 359.97438 * 18 17 16 26 26 C 1.40656 * 107.83420 * 0.23696 * 11 10 9 27 27 N 1.30910 * 108.38937 * 359.59095 * 26 11 10 28 28 H 0.96997 * 120.00175 * 0.02562 * 1 2 3 29 29 H 1.08005 * 126.24374 * 0.03503 * 10 9 7 30 30 H 0.96994 * 119.99955 * 359.97438 * 12 11 10 31 31 H 1.08004 * 125.95607 * 0.24131 * 16 15 13 32 32 H 1.08000 * 120.45519 * 0.02562 * 20 19 18 33 33 H 1.07997 * 119.58133 * 180.27102 * 21 20 19 34 34 H 1.07997 * 119.59023 * 180.02562 * 23 22 21 35 35 H 1.07997 * 120.46195 * 180.02562 * 24 23 22 36 36 H 1.07996 * 126.31415 * 179.97438 * 25 18 17 37 37 H 1.07994 * 125.80404 * 179.75638 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4944 2.0464 -1.4001 5 1 1.4444 2.6527 0.7001 6 1 3.5444 1.4402 0.7001 7 6 2.0078 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0001 9 7 1.3213 -2.3929 0.0005 10 6 1.8749 -3.6406 0.0015 11 6 0.8577 -4.5385 0.0006 12 7 0.9889 -5.9380 0.0006 13 6 -0.1103 -6.7179 0.0001 14 8 -1.2159 -6.2107 -0.0009 15 6 0.0273 -8.1855 -0.0005 16 6 1.2383 -8.9148 0.0001 17 7 0.9454 -10.1860 -0.0002 18 7 -0.4464 -10.3309 -0.0014 19 6 -1.1424 -11.5446 -0.0015 20 6 -2.5355 -11.5695 0.0036 21 6 -3.1847 -12.7873 -0.0018 22 7 -2.5030 -13.9169 -0.0010 23 6 -1.1837 -13.9349 -0.0003 24 6 -0.4603 -12.7595 -0.0008 25 6 -1.0023 -9.1048 -0.0014 26 6 -0.3513 -3.8198 -0.0066 27 7 -0.0716 -2.5409 -0.0009 28 1 -0.4850 0.8400 -0.0004 29 1 2.9301 -3.8710 0.0030 30 1 1.8705 -6.3425 0.0010 31 1 2.2326 -8.4930 0.0046 32 1 -3.0995 -10.6484 0.0073 33 1 -4.2642 -12.8161 -0.0023 34 1 -0.6633 -14.8812 -0.0001 35 1 0.6194 -12.7812 -0.0006 36 1 -2.0590 -8.8817 -0.0026 37 1 -1.3419 -4.2498 -0.0128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625845763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:52 Heat of formation + Delta-G solvation = 152.079397 kcal Electronic energy + Delta-G solvation = -24711.843681 eV Core-core repulsion = 20878.553410 eV Total energy + Delta-G solvation = -3833.290271 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.108 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.93506 -41.61449 -40.94847 -39.81844 -35.91999 -35.54655 -34.87550 -32.60337 -32.25539 -31.56918 -31.28659 -29.46973 -26.94663 -25.52468 -24.94289 -23.64906 -22.75664 -22.24108 -21.37135 -21.05187 -19.91451 -19.06270 -17.87547 -17.36813 -17.17224 -16.95549 -16.81252 -16.64111 -16.19722 -15.87834 -15.72421 -15.34396 -15.02976 -14.94983 -14.74782 -14.71034 -14.67152 -13.92413 -13.45627 -13.27487 -12.94344 -12.89296 -12.81716 -12.22782 -12.11092 -12.07135 -11.81633 -10.98739 -10.85211 -10.75228 -10.65734 -10.52161 -10.31116 -10.06627 -9.68962 -8.47308 -8.44146 -6.20667 -0.54194 0.01660 0.68338 0.95323 1.08292 1.33831 1.41774 1.59245 1.77838 2.08369 2.17767 2.33981 2.71380 2.74751 2.93368 3.12414 3.19156 3.45473 3.49512 3.72974 3.82708 3.94961 4.02692 4.16121 4.40526 4.46249 4.53543 4.64639 4.67989 4.76909 4.88582 5.03936 5.13940 5.25493 5.33314 5.43548 5.50052 5.76375 5.99380 6.25005 6.35651 6.77168 6.79575 6.87928 7.41410 7.50712 7.72310 8.55318 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.050200 B = 0.001988 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.632292 B =14079.020245 C =14626.807521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.008 4.008 3 Si 1.018 2.982 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.353 4.353 8 H 0.142 0.858 9 N -0.170 5.170 10 C -0.078 4.078 11 C -0.042 4.042 12 N -0.608 5.608 13 C 0.580 3.420 14 O -0.581 6.581 15 C -0.279 4.279 16 C 0.107 3.893 17 N -0.304 5.304 18 N -0.320 5.320 19 C 0.179 3.821 20 C -0.194 4.194 21 C 0.127 3.873 22 N -0.513 5.513 23 C 0.124 3.876 24 C -0.177 4.177 25 C 0.132 3.868 26 C -0.059 4.059 27 N -0.311 5.311 28 H 0.276 0.724 29 H 0.190 0.810 30 H 0.420 0.580 31 H 0.234 0.766 32 H 0.163 0.837 33 H 0.195 0.805 34 H 0.192 0.808 35 H 0.153 0.847 36 H 0.210 0.790 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.291 -23.627 0.024 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.167 1.167 7 C -0.484 4.484 8 H 0.159 0.841 9 N 0.061 4.939 10 C -0.228 4.228 11 C -0.148 4.148 12 N -0.251 5.251 13 C 0.369 3.631 14 O -0.463 6.463 15 C -0.293 4.293 16 C -0.082 4.082 17 N -0.121 5.121 18 N -0.093 5.093 19 C 0.079 3.921 20 C -0.217 4.217 21 C -0.029 4.029 22 N -0.222 5.222 23 C -0.033 4.033 24 C -0.199 4.199 25 C -0.015 4.015 26 C -0.234 4.234 27 N -0.143 5.143 28 H 0.085 0.915 29 H 0.207 0.793 30 H 0.257 0.743 31 H 0.250 0.750 32 H 0.180 0.820 33 H 0.212 0.788 34 H 0.209 0.791 35 H 0.171 0.829 36 H 0.227 0.773 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.856 -24.020 0.033 24.036 hybrid contribution 0.867 1.578 -0.017 1.800 sum 1.723 -22.443 0.016 22.509 Atomic orbital electron populations 1.70398 1.08402 1.29008 1.37569 1.26870 0.96474 1.04336 0.94251 0.84602 0.78317 0.74171 0.79176 1.18967 1.20344 1.16686 1.20604 0.92956 0.80879 1.53955 0.84115 1.44836 1.03619 1.04834 1.40593 1.22014 0.98877 0.84099 1.17810 1.17279 0.92848 0.83427 1.21260 1.42099 1.09461 1.02290 1.71295 1.17443 0.83675 0.85479 0.76546 1.90668 1.27268 1.75469 1.52846 1.20111 0.94269 0.92444 1.22476 1.24844 1.00286 0.89114 0.94004 1.77219 0.89301 1.19886 1.25649 1.45660 1.05208 1.04028 1.54403 1.18198 0.91589 0.83373 0.98981 1.22241 0.91341 1.02780 1.05309 1.23180 1.02085 0.85672 0.91985 1.67787 1.09712 1.31405 1.13343 1.23187 0.89319 0.98499 0.92246 1.22086 1.03003 0.90986 1.03786 1.23334 1.01193 0.82900 0.94083 1.24198 0.99144 0.90880 1.09187 1.78154 0.92086 1.16637 1.27439 0.91479 0.79269 0.74288 0.75006 0.81971 0.78834 0.79113 0.82930 0.77325 0.81437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.71 11.81 21.66 0.26 -47.45 16 2 C -0.01 -0.41 5.50 84.95 0.47 0.06 16 3 Si 1.02 38.44 29.55 68.60 2.03 40.46 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.24 -8.30 7.11 99.48 0.71 -7.60 16 7 C -0.35 -18.53 10.25 84.01 0.86 -17.66 16 8 H 0.14 6.36 7.83 -2.91 -0.02 6.33 16 9 N -0.17 -9.34 3.74 -190.00 -0.71 -10.05 16 10 C -0.08 -3.50 11.49 83.37 0.96 -2.54 16 11 C -0.04 -1.88 6.90 37.74 0.26 -1.62 16 12 N -0.61 -20.09 5.46 -306.86 -1.67 -21.77 16 13 C 0.58 19.67 7.78 86.66 0.67 20.34 16 14 O -0.58 -24.78 14.05 -4.14 -0.06 -24.84 16 15 C -0.28 -6.94 6.13 -20.14 -0.12 -7.07 16 16 C 0.11 2.05 11.50 85.67 0.99 3.03 16 17 N -0.30 -6.45 11.87 -56.22 -0.67 -7.12 16 18 N -0.32 -6.63 3.76 -185.63 -0.70 -7.33 16 19 C 0.18 3.14 6.73 38.38 0.26 3.40 16 20 C -0.19 -2.61 9.52 22.48 0.21 -2.40 16 21 C 0.13 1.56 11.17 84.62 0.95 2.50 16 22 N -0.51 -7.82 10.36 -196.07 -2.03 -9.85 16 23 C 0.12 1.59 11.17 84.62 0.95 2.54 16 24 C -0.18 -2.68 9.73 22.48 0.22 -2.46 16 25 C 0.13 2.88 10.64 84.21 0.90 3.78 16 26 C -0.06 -3.17 10.85 85.42 0.93 -2.25 16 27 N -0.31 -18.70 10.40 -56.46 -0.59 -19.29 16 28 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.19 6.57 8.06 -2.91 -0.02 6.55 16 30 H 0.42 9.61 7.78 -92.71 -0.72 8.89 16 31 H 0.23 2.48 7.50 -2.91 -0.02 2.46 16 32 H 0.16 1.54 6.85 -2.91 -0.02 1.52 16 33 H 0.19 1.14 8.06 -2.91 -0.02 1.11 16 34 H 0.19 1.25 8.06 -2.91 -0.02 1.22 16 35 H 0.15 2.17 7.78 -2.91 -0.02 2.15 16 36 H 0.21 3.70 7.09 -2.91 -0.02 3.68 16 37 H 0.17 9.13 5.91 -2.91 -0.02 9.12 16 Total: -1.00 -81.75 334.90 4.78 -76.97 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.43 Total: 30.62 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 8.49 Total: -0.36 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -6.11 Total: -122.86 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.06 Total: -24.84 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.46 kcal Total: -81.75 4.78 -76.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625845763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.051 kcal (2) G-P(sol) polarization free energy of solvation -81.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds