Wall clock time and date at job start Tue Mar 31 2020 14:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38327 * 119.92090 * 2 1 4 4 C 1.38060 * 120.07835 * 179.97438 * 3 2 1 5 5 C 1.38991 * 119.92195 * 0.02562 * 4 3 2 6 6 S 1.76199 * 120.08077 * 180.02562 * 5 4 3 7 7 C 1.81398 * 103.00071 * 0.02562 * 6 5 4 8 8 C 1.50705 * 109.47136 * 179.97438 * 7 6 5 9 9 O 1.20823 * 120.00138 * 0.02562 * 8 7 6 10 10 O 1.34231 * 119.99648 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99529 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46932 * 180.02562 * 11 10 8 13 13 O 1.42897 * 109.47712 * 64.99191 * 12 11 10 14 14 C 1.42899 * 114.00406 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47121 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00360 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00184 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00422 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99485 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47319 * 90.00174 * 19 17 15 21 21 H 1.48505 * 109.46810 * 209.99462 * 19 17 15 22 22 H 1.48502 * 109.47325 * 329.99486 * 19 17 15 23 23 C 1.38956 * 119.84299 * 0.27607 * 5 4 3 24 24 C 1.50697 * 120.04622 * 179.72350 * 23 5 4 25 25 C 1.38106 * 119.91079 * 359.40299 * 23 5 4 26 26 H 1.09003 * 109.47260 * 89.99184 * 1 2 3 27 27 H 1.08999 * 109.47399 * 209.99856 * 1 2 3 28 28 H 1.09001 * 109.46752 * 329.99530 * 1 2 3 29 29 H 1.08001 * 119.95961 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.04235 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47085 * 299.99567 * 7 6 5 32 32 H 1.09000 * 109.46946 * 60.00083 * 7 6 5 33 33 H 1.09003 * 109.46780 * 299.99295 * 11 10 8 34 34 H 1.08994 * 109.47696 * 60.00142 * 11 10 8 35 35 H 1.09005 * 109.47523 * 184.99800 * 12 11 10 36 36 H 1.09009 * 109.47035 * 304.99645 * 12 11 10 37 37 H 1.08997 * 109.47322 * 300.00432 * 14 13 12 38 38 H 1.09000 * 109.46716 * 60.00566 * 14 13 12 39 39 H 0.96996 * 119.99997 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.46958 * 89.99658 * 24 23 5 41 41 H 1.08994 * 109.46995 * 210.00047 * 24 23 5 42 42 H 1.09001 * 109.46791 * 330.00189 * 24 23 5 43 43 H 1.08004 * 119.96052 * 180.31362 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1989 0.0000 4 6 3.5775 1.2027 0.0005 5 6 4.2742 0.0000 0.0005 6 16 6.0362 -0.0001 0.0019 7 6 6.4443 1.7674 0.0038 8 6 7.9417 1.9372 0.0057 9 8 8.6599 0.9656 0.0054 10 8 8.4775 3.1679 0.0068 11 6 9.9269 3.2557 0.0081 12 6 10.3487 4.7265 0.0099 13 8 9.9315 5.3403 1.2311 14 6 10.2788 6.7225 1.3352 15 6 9.7937 7.2643 2.6550 16 1 9.2727 6.6177 3.3456 17 6 10.0150 8.5856 2.9811 18 7 9.5912 9.0586 4.1327 19 14 10.9155 9.7042 1.7864 20 1 9.9345 10.3509 0.8784 21 1 11.6512 10.7480 2.5444 22 1 11.8769 8.9030 0.9869 23 6 3.5778 -1.2025 -0.0058 24 6 4.3284 -2.5092 -0.0121 25 6 2.1967 -1.1985 0.0004 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6550 2.1331 0.0004 30 1 4.1157 2.1391 0.0010 31 1 6.0261 2.2378 -0.8861 32 1 6.0247 2.2362 0.8939 33 1 10.3198 2.7644 0.8983 34 1 10.3215 2.7654 -0.8817 35 1 11.4330 4.7937 -0.0787 36 1 9.8829 5.2390 -0.8319 37 1 11.3617 6.8307 1.2743 38 1 9.8120 7.2767 0.5209 39 1 9.7466 9.9882 4.3619 40 1 4.5091 -2.8293 1.0139 41 1 3.7379 -3.2649 -0.5300 42 1 5.2813 -2.3782 -0.5249 43 1 1.6547 -2.1327 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815169737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:36 Heat of formation + Delta-G solvation = -115.100078 kcal Electronic energy + Delta-G solvation = -23398.073655 eV Core-core repulsion = 19727.596406 eV Total energy + Delta-G solvation = -3670.477250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.47222 -39.67290 -37.33064 -36.24621 -33.87210 -32.77663 -32.66544 -31.13243 -29.78398 -27.71271 -27.59639 -27.06671 -23.01411 -22.47685 -21.92889 -21.45461 -20.93307 -18.17808 -17.69674 -17.03892 -16.81945 -16.31754 -15.99411 -15.64631 -15.51244 -15.03644 -14.71563 -14.56003 -14.42695 -13.98827 -13.71838 -13.54126 -13.42261 -13.29445 -12.84754 -12.79366 -12.55556 -12.49183 -12.33686 -12.09442 -11.80171 -11.78144 -11.38355 -11.21997 -10.93307 -10.74721 -10.61002 -10.57251 -10.37855 -9.91413 -9.78138 -9.25238 -9.08209 -8.96175 -8.55459 -7.60254 -6.15728 -4.15383 0.87317 0.90879 1.04865 2.03338 2.04696 2.64931 3.21101 3.28249 3.28829 3.31675 4.30911 4.38242 4.40034 4.50325 4.51046 4.55262 4.59463 4.89701 4.93555 4.95554 5.05667 5.15200 5.16160 5.24393 5.28562 5.30347 5.33803 5.37668 5.55530 5.61720 5.67935 5.70966 5.86360 5.87293 5.93747 6.11699 6.27002 6.37008 6.50517 6.61427 6.91812 7.52902 7.59014 7.90207 8.58737 8.95288 9.42699 10.97205 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.016053 B = 0.002139 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.809785 B =13089.537869 C =14415.159547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.105 4.105 4 C -0.126 4.126 5 C -0.108 4.108 6 S -0.028 6.028 7 C -0.133 4.133 8 C 0.482 3.518 9 O -0.496 6.496 10 O -0.335 6.335 11 C 0.075 3.925 12 C 0.057 3.943 13 O -0.376 6.376 14 C 0.168 3.832 15 C -0.521 4.521 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.266 1.266 23 C -0.061 4.061 24 C -0.119 4.119 25 C -0.105 4.105 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.005 0.995 38 H 0.001 0.999 39 H 0.267 0.733 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.482 -20.807 -12.760 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.125 4.125 4 C -0.150 4.150 5 C -0.221 4.221 6 S 0.216 5.784 7 C -0.281 4.281 8 C 0.323 3.677 9 O -0.385 6.385 10 O -0.251 6.251 11 C 0.002 3.998 12 C -0.021 4.021 13 O -0.295 6.295 14 C 0.093 3.907 15 C -0.558 4.558 16 H 0.101 0.899 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.067 4.067 24 C -0.176 4.176 25 C -0.125 4.125 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.022 0.978 38 H 0.019 0.981 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.417 -21.849 -12.487 28.519 hybrid contribution -0.211 2.099 -0.722 2.230 sum -13.628 -19.750 -13.210 27.391 Atomic orbital electron populations 1.20789 0.91001 1.02894 1.02349 1.19948 0.96184 0.93045 0.99979 1.20945 0.93556 0.97812 1.00170 1.21205 0.95072 0.96444 1.02254 1.21873 0.97602 0.96183 1.06400 1.86023 0.96826 1.03453 1.92122 1.23446 0.94202 1.00944 1.09559 1.22308 0.90179 0.82057 0.73120 1.90699 1.62381 1.40298 1.45075 1.86572 1.25742 1.29762 1.82983 1.23271 0.75748 0.97776 1.03051 1.22412 0.98314 0.90956 0.90382 1.87977 1.80196 1.26501 1.34836 1.20641 0.94397 0.77707 0.97929 1.20867 1.37833 0.96035 1.01105 0.89935 1.24775 0.95374 0.97491 0.95349 1.69870 1.46218 1.15432 1.21685 0.86842 0.80473 0.80923 0.81438 1.19888 1.20723 1.19118 1.19486 0.93495 0.93607 1.00079 1.20825 1.00143 0.93580 1.03003 1.20852 0.92806 0.97758 1.01051 0.91143 0.91516 0.91419 0.85620 0.85606 0.85360 0.84982 0.90015 0.89993 0.91572 0.92962 0.97782 0.98150 0.92299 0.90491 0.91047 0.90830 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.09 -0.73 5.88 -104.57 -0.62 -1.35 16 3 C -0.11 -0.93 9.69 -39.61 -0.38 -1.31 16 4 C -0.13 -1.23 9.36 -39.37 -0.37 -1.60 16 5 C -0.11 -1.13 6.11 -39.04 -0.24 -1.37 16 6 S -0.03 -0.32 19.27 -107.50 -2.07 -2.39 16 7 C -0.13 -1.45 4.93 36.01 0.18 -1.27 16 8 C 0.48 6.82 7.98 36.01 0.29 7.11 16 9 O -0.50 -8.00 15.61 -18.75 -0.29 -8.29 16 10 O -0.33 -5.24 10.19 -42.03 -0.43 -5.67 16 11 C 0.08 1.11 5.84 37.16 0.22 1.33 16 12 C 0.06 0.95 6.33 37.16 0.24 1.18 16 13 O -0.38 -8.62 10.30 -38.80 -0.40 -9.02 16 14 C 0.17 4.20 4.76 36.00 0.17 4.38 16 15 C -0.52 -15.38 9.99 -34.44 -0.34 -15.73 16 16 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.89 -27.40 13.96 55.43 0.77 -26.63 16 19 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 23 C -0.06 -0.58 5.90 -104.41 -0.62 -1.19 16 24 C -0.12 -0.93 9.57 36.00 0.34 -0.58 16 25 C -0.11 -0.88 9.35 -39.61 -0.37 -1.25 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 28 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 29 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.13 1.07 5.88 -52.49 -0.31 0.76 16 31 H 0.13 1.10 7.75 -51.92 -0.40 0.70 16 32 H 0.13 1.30 7.75 -51.92 -0.40 0.90 16 33 H 0.08 1.25 8.13 -51.93 -0.42 0.82 16 34 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.00 0.11 7.20 -51.93 -0.37 -0.27 16 38 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 42 H 0.07 0.63 6.79 -51.93 -0.35 0.28 16 43 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -34.18 377.23 -9.11 -43.29 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -6.46 Total: -3.48 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.24 Total: -9.92 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.77 Total: -26.63 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -1.12 Total: -22.98 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -2.07 Total: -2.39 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.18 -9.11 -43.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815169737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.811 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds