Wall clock time and date at job start Tue Mar 31 2020 14:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38327 * 119.92090 * 2 1 4 4 C 1.38060 * 120.07835 * 179.97438 * 3 2 1 5 5 C 1.38991 * 119.92195 * 0.02562 * 4 3 2 6 6 S 1.76199 * 120.08077 * 180.02562 * 5 4 3 7 7 C 1.81398 * 103.00071 * 0.02562 * 6 5 4 8 8 C 1.50705 * 109.47136 * 179.97438 * 7 6 5 9 9 O 1.20823 * 120.00138 * 0.02562 * 8 7 6 10 10 O 1.34231 * 119.99648 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99529 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46932 * 180.02562 * 11 10 8 13 13 O 1.42897 * 109.47712 * 64.99191 * 12 11 10 14 14 C 1.42899 * 114.00406 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47121 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00360 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00184 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00422 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99485 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47319 * 90.00174 * 19 17 15 21 21 H 1.48505 * 109.46810 * 209.99462 * 19 17 15 22 22 H 1.48502 * 109.47325 * 329.99486 * 19 17 15 23 23 C 1.38956 * 119.84299 * 0.27607 * 5 4 3 24 24 C 1.50697 * 120.04622 * 179.72350 * 23 5 4 25 25 C 1.38106 * 119.91079 * 359.40299 * 23 5 4 26 26 H 1.09003 * 109.47260 * 89.99184 * 1 2 3 27 27 H 1.08999 * 109.47399 * 209.99856 * 1 2 3 28 28 H 1.09001 * 109.46752 * 329.99530 * 1 2 3 29 29 H 1.08001 * 119.95961 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.04235 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47085 * 299.99567 * 7 6 5 32 32 H 1.09000 * 109.46946 * 60.00083 * 7 6 5 33 33 H 1.09003 * 109.46780 * 299.99295 * 11 10 8 34 34 H 1.08994 * 109.47696 * 60.00142 * 11 10 8 35 35 H 1.09005 * 109.47523 * 184.99800 * 12 11 10 36 36 H 1.09009 * 109.47035 * 304.99645 * 12 11 10 37 37 H 1.08997 * 109.47322 * 300.00432 * 14 13 12 38 38 H 1.09000 * 109.46716 * 60.00566 * 14 13 12 39 39 H 0.96996 * 119.99997 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.46958 * 89.99658 * 24 23 5 41 41 H 1.08994 * 109.46995 * 210.00047 * 24 23 5 42 42 H 1.09001 * 109.46791 * 330.00189 * 24 23 5 43 43 H 1.08004 * 119.96052 * 180.31362 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1989 0.0000 4 6 3.5775 1.2027 0.0005 5 6 4.2742 0.0000 0.0005 6 16 6.0362 -0.0001 0.0019 7 6 6.4443 1.7674 0.0038 8 6 7.9417 1.9372 0.0057 9 8 8.6599 0.9656 0.0054 10 8 8.4775 3.1679 0.0068 11 6 9.9269 3.2557 0.0081 12 6 10.3487 4.7265 0.0099 13 8 9.9315 5.3403 1.2311 14 6 10.2788 6.7225 1.3352 15 6 9.7937 7.2643 2.6550 16 1 9.2727 6.6177 3.3456 17 6 10.0150 8.5856 2.9811 18 7 9.5912 9.0586 4.1327 19 14 10.9155 9.7042 1.7864 20 1 9.9345 10.3509 0.8784 21 1 11.6512 10.7480 2.5444 22 1 11.8769 8.9030 0.9869 23 6 3.5778 -1.2025 -0.0058 24 6 4.3284 -2.5092 -0.0121 25 6 2.1967 -1.1985 0.0004 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6550 2.1331 0.0004 30 1 4.1157 2.1391 0.0010 31 1 6.0261 2.2378 -0.8861 32 1 6.0247 2.2362 0.8939 33 1 10.3198 2.7644 0.8983 34 1 10.3215 2.7654 -0.8817 35 1 11.4330 4.7937 -0.0787 36 1 9.8829 5.2390 -0.8319 37 1 11.3617 6.8307 1.2743 38 1 9.8120 7.2767 0.5209 39 1 9.7466 9.9882 4.3619 40 1 4.5091 -2.8293 1.0139 41 1 3.7379 -3.2649 -0.5300 42 1 5.2813 -2.3782 -0.5249 43 1 1.6547 -2.1327 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815169737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:35 Heat of formation + Delta-G solvation = -134.460976 kcal Electronic energy + Delta-G solvation = -23398.913207 eV Core-core repulsion = 19727.596406 eV Total energy + Delta-G solvation = -3671.316801 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.63534 -40.32117 -38.87187 -37.58451 -34.90631 -34.47668 -33.40294 -32.29803 -31.05515 -29.48240 -28.25854 -27.70370 -24.26352 -23.92234 -23.23285 -22.45879 -21.70618 -19.17938 -19.13264 -18.59140 -18.11177 -17.34546 -17.24613 -16.82833 -16.52139 -16.26720 -16.18478 -15.50061 -15.33445 -14.99289 -14.91570 -14.58225 -14.20767 -14.13007 -14.03154 -13.99806 -13.76363 -13.40451 -13.30229 -13.01786 -12.89562 -12.72331 -12.66713 -12.46488 -12.31613 -12.00650 -11.90142 -11.77964 -11.76410 -11.37119 -11.17423 -10.94345 -10.47509 -10.42591 -9.75096 -8.41170 -8.37889 -6.46544 0.04602 0.19309 0.37395 0.92637 1.23798 1.34029 1.37480 1.48128 1.60955 2.29280 2.65240 2.92582 2.94887 3.41861 3.77079 3.78782 3.86014 3.88379 3.97570 4.07299 4.09482 4.34321 4.35375 4.38645 4.46995 4.55325 4.58955 4.66978 4.69631 4.73513 4.74345 4.86877 4.98782 5.01107 5.17675 5.23355 5.25936 5.30020 5.41679 5.46587 5.64273 5.89701 5.98949 6.46136 6.57391 6.69358 7.17652 8.79299 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.016053 B = 0.002139 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.809785 B =13089.537869 C =14415.159547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.117 4.117 4 C -0.138 4.138 5 C -0.123 4.123 6 S -0.057 6.057 7 C -0.126 4.126 8 C 0.483 3.517 9 O -0.519 6.519 10 O -0.350 6.350 11 C 0.074 3.926 12 C 0.049 3.951 13 O -0.408 6.408 14 C 0.178 3.822 15 C -0.548 4.548 16 H 0.027 0.973 17 C 0.010 3.990 18 N -0.943 5.943 19 Si 0.958 3.042 20 H -0.259 1.259 21 H -0.275 1.275 22 H -0.241 1.241 23 C -0.073 4.073 24 C -0.117 4.117 25 C -0.111 4.111 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.141 0.859 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.140 0.860 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.019 0.981 38 H 0.016 0.984 39 H 0.273 0.727 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.749 -20.594 -15.129 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.137 4.137 4 C -0.162 4.162 5 C -0.236 4.236 6 S 0.186 5.814 7 C -0.274 4.274 8 C 0.325 3.675 9 O -0.409 6.409 10 O -0.267 6.267 11 C 0.001 3.999 12 C -0.027 4.027 13 O -0.328 6.328 14 C 0.103 3.897 15 C -0.586 4.586 16 H 0.045 0.955 17 C -0.188 4.188 18 N -0.582 5.582 19 Si 0.779 3.221 20 H -0.183 1.183 21 H -0.200 1.200 22 H -0.164 1.164 23 C -0.079 4.079 24 C -0.174 4.174 25 C -0.130 4.130 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.159 0.841 30 H 0.150 0.850 31 H 0.170 0.830 32 H 0.158 0.842 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.037 0.963 38 H 0.034 0.966 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.699 -21.666 -14.866 29.632 hybrid contribution -0.246 1.917 0.079 1.934 sum -13.945 -19.749 -14.787 28.339 Atomic orbital electron populations 1.20840 0.89088 1.03753 1.03211 1.20325 0.97674 0.92772 0.98614 1.21225 0.93353 0.98926 1.00152 1.21400 0.95754 0.96537 1.02467 1.21909 0.96590 0.97038 1.08041 1.86066 0.98559 1.04022 1.92713 1.23465 0.91941 1.00931 1.11039 1.22806 0.91277 0.81263 0.72127 1.90683 1.63224 1.40778 1.46192 1.86565 1.26271 1.30661 1.83167 1.23343 0.75665 0.96824 1.04110 1.22778 1.00179 0.91456 0.88288 1.87919 1.80953 1.25542 1.38363 1.20368 0.94859 0.79020 0.95484 1.21168 1.38358 0.96301 1.02773 0.95479 1.25899 0.96052 0.99230 0.97569 1.70036 1.47623 1.16339 1.24207 0.85569 0.79500 0.78275 0.78739 1.18338 1.20017 1.16423 1.19793 0.94287 0.93866 0.99944 1.20844 0.99810 0.93494 1.03253 1.21160 0.92434 0.98911 1.00486 0.90153 0.90408 0.90872 0.84124 0.84982 0.83004 0.84209 0.91136 0.86730 0.88896 0.91334 0.96330 0.96632 0.91782 0.90297 0.89081 0.91906 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 71.23 0.71 -0.31 16 2 C -0.09 -1.36 5.88 -19.83 -0.12 -1.47 16 3 C -0.12 -1.94 9.69 22.25 0.22 -1.72 16 4 C -0.14 -2.63 9.36 22.41 0.21 -2.42 16 5 C -0.12 -2.58 6.11 22.62 0.14 -2.44 16 6 S -0.06 -1.30 19.27 -56.49 -1.09 -2.39 16 7 C -0.13 -2.71 4.93 71.24 0.35 -2.36 16 8 C 0.48 13.61 7.98 71.24 0.57 14.18 16 9 O -0.52 -16.80 15.61 21.97 0.34 -16.46 16 10 O -0.35 -10.80 10.19 -48.78 -0.50 -11.30 16 11 C 0.07 2.10 5.84 71.98 0.42 2.52 16 12 C 0.05 1.55 6.33 71.98 0.46 2.00 16 13 O -0.41 -18.60 10.30 -145.57 -1.50 -20.10 16 14 C 0.18 8.71 4.76 71.23 0.34 9.05 16 15 C -0.55 -33.27 9.99 25.60 0.26 -33.02 16 16 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 17 C 0.01 0.61 5.47 84.66 0.46 1.07 16 18 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 19 Si 0.96 42.48 27.47 68.60 1.88 44.37 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.24 -9.65 6.54 99.48 0.65 -8.99 16 23 C -0.07 -1.35 5.90 -19.72 -0.12 -1.46 16 24 C -0.12 -1.77 9.57 71.23 0.68 -1.09 16 25 C -0.11 -1.68 9.35 22.25 0.21 -1.47 16 26 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 28 H 0.07 0.60 8.08 -2.39 -0.02 0.58 16 29 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.13 2.20 5.88 -2.91 -0.02 2.18 16 31 H 0.15 2.49 7.75 -2.39 -0.02 2.47 16 32 H 0.14 2.77 7.75 -2.39 -0.02 2.76 16 33 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 34 H 0.11 2.49 8.13 -2.39 -0.02 2.48 16 35 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 36 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 38 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 39 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 0.97 8.09 -2.39 -0.02 0.95 16 42 H 0.06 1.09 6.79 -2.39 -0.02 1.07 16 43 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -76.47 377.23 5.17 -71.30 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.94 Total: 12.45 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.79 Total: -18.94 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.30 Total: -58.92 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -1.65 Total: -47.85 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.88 Total: 44.37 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -1.09 Total: -2.39 kcal Total: -76.47 5.17 -71.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815169737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.165 kcal (2) G-P(sol) polarization free energy of solvation -76.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds