Wall clock time and date at job start Tue Mar 31 2020 14:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 C 1.53000 * 109.47021 * 304.99759 * 3 2 1 5 5 C 1.53008 * 109.47328 * 185.00352 * 3 2 1 6 6 O 1.45197 * 109.46975 * 179.97438 * 5 3 2 7 7 C 1.34786 * 116.99626 * 179.97438 * 6 5 3 8 8 O 1.21533 * 120.00091 * 359.97438 * 7 6 5 9 9 C 1.47286 * 120.00002 * 179.97438 * 7 6 5 10 10 C 1.39747 * 120.21877 * 0.02562 * 9 7 6 11 11 C 1.37778 * 119.93078 * 180.02562 * 10 9 7 12 12 C 1.38676 * 120.39081 * 0.02562 * 11 10 9 13 13 C 1.37905 * 120.45491 * 359.97438 * 12 11 10 14 14 C 1.39124 * 120.05298 * 359.71950 * 13 12 11 15 15 S 1.76191 * 120.19696 * 180.27704 * 14 13 12 16 16 C 1.76199 * 99.99854 * 6.86477 * 15 14 13 17 17 H 1.08004 * 120.00373 * 5.66023 * 16 15 14 18 18 C 1.38820 * 120.00036 * 185.66097 * 16 15 14 19 19 N 1.31540 * 119.99809 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47312 * 89.99711 * 20 18 16 22 22 H 1.48501 * 109.47017 * 209.99898 * 20 18 16 23 23 H 1.48508 * 109.46880 * 329.99684 * 20 18 16 24 24 O 1.42898 * 109.47405 * 64.99620 * 3 2 1 25 25 C 1.42902 * 113.99568 * 60.00439 * 24 3 2 26 26 H 1.09004 * 109.47297 * 300.00410 * 1 2 3 27 27 H 1.08999 * 109.47401 * 60.00347 * 1 2 3 28 28 H 1.09005 * 109.47626 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47297 * 239.99590 * 2 1 3 30 30 H 1.08997 * 109.46970 * 119.99962 * 2 1 3 31 31 H 1.09002 * 109.47507 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47343 * 299.99927 * 4 3 2 33 33 H 1.09003 * 109.47373 * 59.99859 * 4 3 2 34 34 H 1.09006 * 109.46226 * 299.99792 * 5 3 2 35 35 H 1.08991 * 109.46977 * 59.99289 * 5 3 2 36 36 H 1.08001 * 120.03230 * 359.97438 * 10 9 7 37 37 H 1.07999 * 119.80418 * 180.02562 * 11 10 9 38 38 H 1.08004 * 119.77514 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.97627 * 180.02562 * 13 12 11 40 40 H 0.97006 * 119.99851 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.47075 * 180.02562 * 25 24 3 42 42 H 1.09006 * 109.47096 * 300.00057 * 25 24 3 43 43 H 1.09002 * 109.47641 * 59.99827 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4300 2.1990 -1.1817 5 6 3.5649 1.4442 -0.1258 6 8 4.0488 2.8132 -0.1264 7 6 5.3808 2.9913 -0.2307 8 8 6.1175 2.0287 -0.3182 9 6 5.9434 4.3524 -0.2386 10 6 5.1005 5.4625 -0.1376 11 6 5.6332 6.7331 -0.1461 12 6 7.0031 6.9188 -0.2549 13 6 7.8497 5.8348 -0.3554 14 6 7.3325 4.5433 -0.3424 15 16 8.4111 3.1554 -0.4632 16 6 9.9703 3.9703 -0.3651 17 1 10.0136 5.0316 -0.1692 18 6 11.1430 3.2483 -0.5395 19 7 11.0903 1.9557 -0.7776 20 14 12.7960 4.1121 -0.4347 21 1 13.2809 4.0847 0.9686 22 1 13.7740 3.4172 -1.3100 23 1 12.6473 5.5211 -0.8797 24 8 1.6619 2.0814 1.2210 25 6 2.1824 1.4502 2.3926 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.7937 3.2266 -1.1820 32 1 1.7183 1.7117 -2.1131 33 1 0.3436 2.1978 -1.0922 34 1 3.9994 0.9052 0.7161 35 1 3.8531 0.9569 -1.0571 36 1 4.0326 5.3245 -0.0539 37 1 4.9799 7.5895 -0.0676 38 1 7.4100 7.9193 -0.2610 39 1 8.9153 5.9883 -0.4394 40 1 11.9098 1.4511 -0.8991 41 1 1.8501 1.9945 3.2766 42 1 1.8220 0.4226 2.4423 43 1 3.2717 1.4516 2.3527 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835957478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:01 Heat of formation + Delta-G solvation = -109.230037 kcal Electronic energy + Delta-G solvation = -25253.350955 eV Core-core repulsion = 21583.128249 eV Total energy + Delta-G solvation = -3670.222706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20172 -39.06653 -37.73543 -35.70452 -34.08975 -32.82675 -30.95789 -30.33923 -30.10166 -27.70345 -26.17597 -25.89315 -24.37916 -22.97030 -21.95632 -20.44512 -19.93926 -18.14287 -17.24752 -16.97302 -16.42215 -15.98509 -15.64455 -15.54608 -15.28635 -14.97558 -14.46551 -14.14495 -14.03458 -13.49229 -13.38697 -13.00614 -12.93264 -12.68753 -12.54103 -12.22066 -12.04484 -11.97052 -11.79954 -11.59470 -11.56563 -11.24733 -11.23339 -11.09616 -10.97021 -10.49806 -10.37603 -10.25364 -10.16542 -9.80899 -9.59260 -9.55781 -8.78954 -8.40074 -8.25374 -6.63894 -6.53551 -4.25104 1.38248 2.01708 2.97384 3.05228 3.09107 3.15933 3.23067 3.34334 3.72429 3.99584 4.40776 4.50808 4.60030 4.68105 4.88346 5.00060 5.06907 5.15029 5.24967 5.28066 5.32188 5.45187 5.45824 5.48820 5.54118 5.60523 5.63612 5.70821 5.73660 5.79385 5.85811 5.95775 6.02001 6.14471 6.23356 6.32463 6.59171 6.82599 6.86594 7.06289 7.09995 7.12919 7.39610 7.55623 8.09667 8.42772 8.92978 10.50062 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.018146 B = 0.003269 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.649896 B = 8564.293048 C = 9629.696298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 C 0.119 3.881 4 C -0.140 4.140 5 C 0.042 3.958 6 O -0.346 6.346 7 C 0.494 3.506 8 O -0.487 6.487 9 C -0.165 4.165 10 C -0.037 4.037 11 C -0.191 4.191 12 C -0.069 4.069 13 C -0.157 4.157 14 C -0.054 4.054 15 S 0.182 5.818 16 C -0.594 4.594 17 H 0.093 0.907 18 C 0.084 3.916 19 N -0.857 5.857 20 Si 0.921 3.079 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.267 1.267 24 O -0.366 6.366 25 C 0.022 3.978 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.276 0.724 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.787 0.234 1.664 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.079 3.921 4 C -0.197 4.197 5 C -0.032 4.032 6 O -0.264 6.264 7 C 0.339 3.661 8 O -0.377 6.377 9 C -0.179 4.179 10 C -0.057 4.057 11 C -0.215 4.215 12 C -0.091 4.091 13 C -0.181 4.181 14 C -0.174 4.174 15 S 0.447 5.553 16 C -0.740 4.740 17 H 0.111 0.889 18 C -0.128 4.128 19 N -0.490 5.490 20 Si 0.746 3.254 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.191 1.191 24 O -0.284 6.284 25 C -0.075 4.075 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.158 0.842 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.496 -1.586 1.454 17.628 hybrid contribution 1.622 1.424 0.262 2.174 sum -15.874 -0.162 1.717 15.967 Atomic orbital electron populations 1.21731 0.94440 1.01511 1.02748 1.22068 0.97646 0.95762 1.03282 1.21603 0.90763 0.92888 0.86806 1.21785 1.01222 1.01701 0.94947 1.23561 0.94395 0.82194 1.03086 1.86577 1.24858 1.29948 1.85013 1.21249 0.80020 0.90308 0.74480 1.90838 1.58978 1.42130 1.45724 1.18297 0.92112 0.89529 1.17914 1.21117 0.98769 0.91696 0.94083 1.20720 0.95073 0.96375 1.09341 1.21156 0.93594 0.98120 0.96230 1.21393 1.01026 0.90998 1.04728 1.23067 0.96195 1.01207 0.96910 1.84670 0.93962 1.01573 1.75132 1.24027 0.93722 0.99365 1.56928 0.88933 1.25120 0.99901 0.94835 0.92911 1.69966 1.29835 1.06492 1.42659 0.86113 0.80924 0.79712 0.78623 1.19797 1.20417 1.19140 1.87994 1.73577 1.53805 1.13057 1.22823 0.98831 0.97672 0.88137 0.92058 0.92022 0.92742 0.90522 0.91127 0.90723 0.91170 0.91382 0.91151 0.90514 0.85741 0.86765 0.86800 0.84155 0.91423 0.89587 0.93898 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.32 37.15 0.35 -0.80 16 2 C -0.15 -1.35 4.78 -26.74 -0.13 -1.47 16 3 C 0.12 1.35 0.60 -90.62 -0.05 1.30 16 4 C -0.14 -1.44 8.21 37.16 0.31 -1.14 16 5 C 0.04 0.60 4.00 37.16 0.15 0.75 16 6 O -0.35 -5.87 8.70 -44.69 -0.39 -6.26 16 7 C 0.49 10.08 7.87 34.41 0.27 10.35 16 8 O -0.49 -11.28 13.57 -19.29 -0.26 -11.55 16 9 C -0.17 -3.41 5.89 -104.77 -0.62 -4.02 16 10 C -0.04 -0.64 9.61 -39.19 -0.38 -1.01 16 11 C -0.19 -3.04 10.02 -39.59 -0.40 -3.43 16 12 C -0.07 -1.17 10.02 -39.54 -0.40 -1.57 16 13 C -0.16 -3.25 9.22 -39.37 -0.36 -3.62 16 14 C -0.05 -1.24 6.15 -38.36 -0.24 -1.48 16 15 S 0.18 4.82 18.56 -107.50 -2.00 2.82 16 16 C -0.59 -16.14 9.00 30.95 0.28 -15.86 16 17 H 0.09 2.38 4.98 -52.48 -0.26 2.12 16 18 C 0.08 2.26 5.49 -17.46 -0.10 2.16 16 19 N -0.86 -24.32 13.22 55.49 0.73 -23.59 16 20 Si 0.92 20.36 29.55 -169.99 -5.02 15.34 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 O -0.37 -4.56 9.78 -43.76 -0.43 -4.99 16 25 C 0.02 0.23 10.21 101.05 1.03 1.26 16 26 H 0.06 0.51 7.82 -51.93 -0.41 0.11 16 27 H 0.06 0.45 6.35 -51.93 -0.33 0.12 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.61 6.29 -51.93 -0.33 0.29 16 31 H 0.07 0.87 7.68 -51.93 -0.40 0.48 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.61 6.35 -51.93 -0.33 0.28 16 34 H 0.07 1.01 6.54 -51.93 -0.34 0.67 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.12 1.87 7.61 -52.49 -0.40 1.47 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 39 H 0.14 3.01 5.04 -52.49 -0.26 2.74 16 40 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.38 6.31 -51.93 -0.33 0.05 16 43 H 0.04 0.54 6.42 -51.93 -0.33 0.20 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -30.89 361.60 -8.01 -38.90 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.81 Total: 2.47 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -0.28 Total: -18.59 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.73 Total: -23.59 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -1.08 Total: -22.80 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -2.00 Total: 2.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.89 -8.01 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835957478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.332 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds