Wall clock time and date at job start Tue Mar 31 2020 14:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 C 1.53000 * 109.47021 * 304.99759 * 3 2 1 5 5 C 1.53008 * 109.47328 * 185.00352 * 3 2 1 6 6 O 1.45197 * 109.46975 * 179.97438 * 5 3 2 7 7 C 1.34786 * 116.99626 * 179.97438 * 6 5 3 8 8 O 1.21533 * 120.00091 * 359.97438 * 7 6 5 9 9 C 1.47286 * 120.00002 * 179.97438 * 7 6 5 10 10 C 1.39747 * 120.21877 * 0.02562 * 9 7 6 11 11 C 1.37778 * 119.93078 * 180.02562 * 10 9 7 12 12 C 1.38676 * 120.39081 * 0.02562 * 11 10 9 13 13 C 1.37905 * 120.45491 * 359.97438 * 12 11 10 14 14 C 1.39124 * 120.05298 * 359.71950 * 13 12 11 15 15 S 1.76191 * 120.19696 * 180.27704 * 14 13 12 16 16 C 1.76199 * 99.99854 * 6.86477 * 15 14 13 17 17 H 1.08004 * 120.00373 * 5.66023 * 16 15 14 18 18 C 1.38820 * 120.00036 * 185.66097 * 16 15 14 19 19 N 1.31540 * 119.99809 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47312 * 89.99711 * 20 18 16 22 22 H 1.48501 * 109.47017 * 209.99898 * 20 18 16 23 23 H 1.48508 * 109.46880 * 329.99684 * 20 18 16 24 24 O 1.42898 * 109.47405 * 64.99620 * 3 2 1 25 25 C 1.42902 * 113.99568 * 60.00439 * 24 3 2 26 26 H 1.09004 * 109.47297 * 300.00410 * 1 2 3 27 27 H 1.08999 * 109.47401 * 60.00347 * 1 2 3 28 28 H 1.09005 * 109.47626 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47297 * 239.99590 * 2 1 3 30 30 H 1.08997 * 109.46970 * 119.99962 * 2 1 3 31 31 H 1.09002 * 109.47507 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47343 * 299.99927 * 4 3 2 33 33 H 1.09003 * 109.47373 * 59.99859 * 4 3 2 34 34 H 1.09006 * 109.46226 * 299.99792 * 5 3 2 35 35 H 1.08991 * 109.46977 * 59.99289 * 5 3 2 36 36 H 1.08001 * 120.03230 * 359.97438 * 10 9 7 37 37 H 1.07999 * 119.80418 * 180.02562 * 11 10 9 38 38 H 1.08004 * 119.77514 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.97627 * 180.02562 * 13 12 11 40 40 H 0.97006 * 119.99851 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.47075 * 180.02562 * 25 24 3 42 42 H 1.09006 * 109.47096 * 300.00057 * 25 24 3 43 43 H 1.09002 * 109.47641 * 59.99827 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4300 2.1990 -1.1817 5 6 3.5649 1.4442 -0.1258 6 8 4.0488 2.8132 -0.1264 7 6 5.3808 2.9913 -0.2307 8 8 6.1175 2.0287 -0.3182 9 6 5.9434 4.3524 -0.2386 10 6 5.1005 5.4625 -0.1376 11 6 5.6332 6.7331 -0.1461 12 6 7.0031 6.9188 -0.2549 13 6 7.8497 5.8348 -0.3554 14 6 7.3325 4.5433 -0.3424 15 16 8.4111 3.1554 -0.4632 16 6 9.9703 3.9703 -0.3651 17 1 10.0136 5.0316 -0.1692 18 6 11.1430 3.2483 -0.5395 19 7 11.0903 1.9557 -0.7776 20 14 12.7960 4.1121 -0.4347 21 1 13.2809 4.0847 0.9686 22 1 13.7740 3.4172 -1.3100 23 1 12.6473 5.5211 -0.8797 24 8 1.6619 2.0814 1.2210 25 6 2.1824 1.4502 2.3926 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.7937 3.2266 -1.1820 32 1 1.7183 1.7117 -2.1131 33 1 0.3436 2.1978 -1.0922 34 1 3.9994 0.9052 0.7161 35 1 3.8531 0.9569 -1.0571 36 1 4.0326 5.3245 -0.0539 37 1 4.9799 7.5895 -0.0676 38 1 7.4100 7.9193 -0.2610 39 1 8.9153 5.9883 -0.4394 40 1 11.9098 1.4511 -0.8991 41 1 1.8501 1.9945 3.2766 42 1 1.8220 0.4226 2.4423 43 1 3.2717 1.4516 2.3527 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835957478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:00 Heat of formation + Delta-G solvation = -126.384060 kcal Electronic energy + Delta-G solvation = -25254.094809 eV Core-core repulsion = 21583.128249 eV Total energy + Delta-G solvation = -3670.966560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60896 -40.21195 -39.22427 -37.21677 -34.94047 -34.80662 -32.43481 -31.88611 -31.00750 -28.73207 -27.88318 -27.04778 -25.60739 -24.13033 -23.46814 -22.00157 -20.84745 -19.92416 -18.85977 -18.24468 -17.74699 -17.38957 -17.10910 -16.79189 -16.51684 -16.25936 -15.71162 -15.61154 -15.37922 -14.98146 -14.66367 -14.33666 -14.18649 -14.01107 -13.49516 -13.35251 -13.34174 -13.10175 -13.00130 -12.94314 -12.77269 -12.64296 -12.56944 -12.39632 -12.06994 -11.85119 -11.83595 -11.67230 -11.49791 -11.39795 -11.29197 -10.54947 -10.47866 -10.12737 -9.91941 -8.55956 -8.49661 -6.30177 -0.17234 0.49320 1.24561 1.36430 1.43669 1.53095 1.64648 1.65972 2.18069 2.80419 2.82624 2.95164 3.17571 3.49281 3.70357 3.76669 3.96378 4.07023 4.16140 4.23170 4.25898 4.40097 4.43153 4.49188 4.59250 4.61670 4.66462 4.75051 4.76541 4.80027 4.89822 5.01276 5.07141 5.09051 5.10119 5.31711 5.34322 5.35495 5.44412 5.47945 5.54298 5.63081 6.05561 6.12322 6.22383 6.84838 6.92226 8.56518 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.018146 B = 0.003269 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.649896 B = 8564.293048 C = 9629.696298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.148 4.148 3 C 0.122 3.878 4 C -0.140 4.140 5 C 0.035 3.965 6 O -0.336 6.336 7 C 0.494 3.506 8 O -0.521 6.521 9 C -0.175 4.175 10 C -0.035 4.035 11 C -0.161 4.161 12 C -0.055 4.055 13 C -0.175 4.175 14 C -0.066 4.066 15 S 0.067 5.933 16 C -0.601 4.601 17 H 0.099 0.901 18 C 0.026 3.974 19 N -0.904 5.904 20 Si 0.995 3.005 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.255 1.255 24 O -0.379 6.379 25 C 0.019 3.981 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.127 0.873 40 H 0.277 0.723 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.385 3.175 1.944 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.186 4.186 3 C 0.083 3.917 4 C -0.196 4.196 5 C -0.039 4.039 6 O -0.253 6.253 7 C 0.341 3.659 8 O -0.412 6.412 9 C -0.186 4.186 10 C -0.054 4.054 11 C -0.183 4.183 12 C -0.076 4.076 13 C -0.200 4.200 14 C -0.183 4.183 15 S 0.327 5.673 16 C -0.747 4.747 17 H 0.116 0.884 18 C -0.180 4.180 19 N -0.538 5.538 20 Si 0.816 3.184 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.179 1.179 24 O -0.298 6.298 25 C -0.077 4.077 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.171 0.829 37 H 0.185 0.815 38 H 0.175 0.825 39 H 0.144 0.856 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.079 0.921 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -20.189 1.421 1.745 20.314 hybrid contribution 2.035 0.687 0.222 2.159 sum -18.154 2.108 1.967 18.382 Atomic orbital electron populations 1.21713 0.93042 1.02457 1.02807 1.22082 0.98719 0.93957 1.03801 1.21721 0.88328 0.94683 0.87013 1.21822 1.02232 1.00698 0.94884 1.23926 0.96622 0.80589 1.02791 1.86559 1.22715 1.31847 1.84174 1.21440 0.80889 0.90129 0.73458 1.90841 1.60086 1.43253 1.47070 1.18650 0.91762 0.90919 1.17268 1.21512 0.99798 0.91170 0.92918 1.21367 0.95122 0.97272 1.04581 1.21639 0.93811 0.98740 0.93441 1.21462 1.01218 0.91362 1.05960 1.22973 0.96349 1.00373 0.98638 1.84829 0.96317 1.05692 1.80445 1.24219 0.93851 0.99503 1.57163 0.88379 1.26168 1.03850 0.95494 0.92498 1.70115 1.30712 1.08217 1.44787 0.85009 0.75778 0.78821 0.78816 1.19126 1.19811 1.17918 1.87972 1.73534 1.54618 1.13656 1.22925 0.97614 0.99051 0.88138 0.92565 0.91358 0.91400 0.89744 0.91020 0.92166 0.90151 0.89650 0.91936 0.90592 0.82861 0.81524 0.82530 0.85560 0.91378 0.88154 0.92076 0.95658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.32 71.98 0.67 -1.20 16 2 C -0.15 -2.42 4.78 30.59 0.15 -2.27 16 3 C 0.12 2.62 0.60 -10.79 -0.01 2.62 16 4 C -0.14 -2.62 8.21 71.98 0.59 -2.03 16 5 C 0.04 1.00 4.00 71.98 0.29 1.29 16 6 O -0.34 -11.38 8.70 -53.18 -0.46 -11.84 16 7 C 0.49 20.75 7.87 70.20 0.55 21.30 16 8 O -0.52 -25.75 13.57 19.73 0.27 -25.48 16 9 C -0.17 -7.16 5.89 -19.96 -0.12 -7.28 16 10 C -0.03 -1.07 9.61 22.53 0.22 -0.85 16 11 C -0.16 -4.21 10.02 22.27 0.22 -3.98 16 12 C -0.06 -1.65 10.02 22.30 0.22 -1.43 16 13 C -0.18 -7.17 9.22 22.40 0.21 -6.97 16 14 C -0.07 -3.08 6.15 23.06 0.14 -2.94 16 15 S 0.07 3.85 18.56 -56.49 -1.05 2.80 16 16 C -0.60 -34.44 9.00 67.96 0.61 -33.83 16 17 H 0.10 5.26 4.98 -2.91 -0.01 5.25 16 18 C 0.03 1.46 5.49 84.88 0.47 1.92 16 19 N -0.90 -54.42 13.22 21.65 0.29 -54.14 16 20 Si 0.99 43.04 29.55 68.60 2.03 45.06 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 24 O -0.38 -8.89 9.78 -140.83 -1.38 -10.27 16 25 C 0.02 0.38 10.21 113.37 1.16 1.54 16 26 H 0.06 0.80 7.82 -2.38 -0.02 0.79 16 27 H 0.07 0.80 6.35 -2.39 -0.02 0.79 16 28 H 0.07 0.72 8.14 -2.38 -0.02 0.71 16 29 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.07 1.15 6.29 -2.39 -0.02 1.14 16 31 H 0.06 1.30 7.68 -2.39 -0.02 1.28 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.31 6.35 -2.39 -0.02 1.29 16 34 H 0.06 1.87 6.54 -2.38 -0.02 1.86 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.15 3.92 7.61 -2.91 -0.02 3.89 16 37 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.13 5.50 5.04 -2.91 -0.01 5.48 16 40 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 41 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.06 1.00 6.31 -2.38 -0.02 0.98 16 43 H 0.02 0.60 6.42 -2.39 -0.02 0.59 16 Total: -1.00 -73.62 361.60 6.09 -67.53 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 1.03 Total: 20.45 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 5.37 Total: -34.11 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.29 Total: -54.14 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -1.57 Total: -47.59 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.05 Total: 2.80 kcal Total: -73.62 6.09 -67.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835957478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.858 kcal (2) G-P(sol) polarization free energy of solvation -73.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds