Wall clock time and date at job start Tue Mar 31 2020 13:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45202 * 109.47072 * 2 1 4 4 C 1.34755 * 117.00154 * 179.97438 * 3 2 1 5 5 O 1.21528 * 119.99914 * 0.02562 * 4 3 2 6 6 C 1.47248 * 120.00013 * 180.02562 * 4 3 2 7 7 C 1.41310 * 126.46862 * 0.04297 * 6 4 3 8 8 C 1.36417 * 106.99805 * 179.97438 * 7 6 4 9 9 C 1.46643 * 125.84876 * 180.02562 * 8 7 6 10 10 O 1.21608 * 119.99970 * 359.97438 * 9 8 7 11 11 O 1.34868 * 120.00422 * 179.97438 * 9 8 7 12 12 C 1.45198 * 117.00209 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.46966 * 180.02562 * 12 11 9 14 14 O 1.21294 * 119.99978 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00037 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99971 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00106 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99839 * 180.02562 * 16 15 13 19 19 N 1.31421 * 120.00337 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00253 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47155 * 59.99671 * 20 18 16 22 22 H 1.48494 * 109.47411 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46775 * 300.00114 * 20 18 16 24 24 N 1.37835 * 108.30274 * 359.74703 * 8 7 6 25 25 H 0.97004 * 125.39118 * 180.26519 * 24 8 7 26 26 C 1.34197 * 109.22759 * 0.42974 * 24 8 7 27 27 C 1.50703 * 125.79887 * 179.83679 * 26 24 8 28 28 H 1.09000 * 109.47032 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47204 * 299.99559 * 1 2 3 30 30 H 1.08997 * 109.46938 * 60.00189 * 1 2 3 31 31 H 1.09000 * 109.47041 * 239.99932 * 2 1 3 32 32 H 1.08997 * 109.46938 * 119.99811 * 2 1 3 33 33 H 1.08000 * 126.49900 * 359.96613 * 7 6 4 34 34 H 1.09000 * 109.47084 * 300.00005 * 12 11 9 35 35 H 1.08996 * 109.46955 * 59.99856 * 12 11 9 36 36 H 0.96998 * 120.00266 * 0.02562 * 15 13 12 37 37 H 0.96998 * 120.00290 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.47152 * 269.68986 * 27 26 24 39 39 H 1.09001 * 109.46980 * 149.69086 * 27 26 24 40 40 H 1.09004 * 109.47113 * 29.69067 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5456 0.0005 5 8 4.0903 0.5818 0.0005 6 6 3.9127 2.9063 0.0011 7 6 3.1836 4.1168 0.0021 8 6 4.0954 5.1315 0.0030 9 6 3.7852 6.5647 0.0046 10 8 2.6272 6.9363 0.0049 11 8 4.7841 7.4710 0.0059 12 6 4.4030 8.8720 0.0081 13 6 5.6422 9.7296 0.0086 14 8 6.7387 9.2109 0.0068 15 7 5.5322 11.0728 0.0100 16 6 6.6596 11.8530 0.0110 17 1 7.6359 11.3912 0.0102 18 6 6.5462 13.2378 0.0131 19 7 5.3582 13.7998 0.0145 20 14 8.0822 14.3009 0.0137 21 1 8.8870 14.0086 -1.1996 22 1 7.6926 15.7338 0.0153 23 1 8.8883 14.0051 1.2253 24 7 5.3581 4.5789 0.0084 25 1 6.1898 5.0781 0.0137 26 6 5.2549 3.2409 0.0014 27 6 6.4059 2.2680 0.0006 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1085 4.2191 0.0020 34 1 3.8117 9.0892 -0.8815 35 1 3.8120 9.0864 0.8985 36 1 4.6554 11.4876 0.0111 37 1 5.2790 14.7666 0.0156 38 1 6.6834 2.0343 -1.0273 39 1 6.1088 1.3533 0.5137 40 1 7.2579 2.7127 0.5148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837874541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:42 Heat of formation + Delta-G solvation = -172.272591 kcal Electronic energy + Delta-G solvation = -25963.933107 eV Core-core repulsion = 21744.683457 eV Total energy + Delta-G solvation = -4219.249650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.99809 -40.29609 -39.82426 -38.15565 -36.69858 -36.17831 -34.06773 -32.43659 -32.10785 -31.46836 -31.41365 -28.81105 -27.30779 -25.04523 -24.40309 -23.04521 -22.26225 -20.52821 -20.10516 -19.65239 -18.84406 -18.13419 -17.35099 -16.77774 -16.68736 -16.45915 -16.01134 -15.93518 -15.20656 -15.13290 -14.54700 -14.21741 -14.06667 -13.95454 -13.84363 -13.56987 -13.36303 -13.07854 -12.96139 -12.87287 -12.33013 -12.23301 -12.18727 -12.12426 -11.85260 -11.66968 -11.16001 -10.77506 -10.76075 -10.62921 -10.53413 -10.52897 -10.34468 -9.65479 -9.54572 -8.62597 -8.60785 -8.14442 -6.55184 -3.97750 1.02691 1.25037 2.32297 2.47844 2.78428 2.88774 3.09588 3.11470 3.19459 3.23727 3.66880 4.06265 4.38870 4.51471 4.59707 4.62906 4.65261 4.71165 4.95102 4.96514 5.06331 5.09626 5.25528 5.29061 5.36987 5.46275 5.51639 5.58800 5.62434 5.65137 5.75927 5.97195 6.15738 6.23389 6.38307 6.44101 6.92175 7.42241 7.65807 7.70829 7.88460 8.41723 9.00954 9.32778 9.82020 10.61698 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.030696 B = 0.002022 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.963283 B =13842.847663 C =14723.758999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.352 6.352 4 C 0.547 3.453 5 O -0.520 6.520 6 C -0.236 4.236 7 C -0.041 4.041 8 C -0.037 4.037 9 C 0.532 3.468 10 O -0.498 6.498 11 O -0.330 6.330 12 C 0.064 3.936 13 C 0.437 3.563 14 O -0.580 6.580 15 N -0.550 5.550 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.895 5.895 20 Si 0.936 3.064 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.507 5.507 25 H 0.436 0.564 26 C 0.152 3.848 27 C -0.104 4.104 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.166 0.834 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.396 0.604 37 H 0.275 0.725 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 -23.602 -0.002 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.269 6.269 4 C 0.393 3.607 5 O -0.411 6.411 6 C -0.243 4.243 7 C -0.065 4.065 8 C -0.145 4.145 9 C 0.376 3.624 10 O -0.387 6.387 11 O -0.245 6.245 12 C -0.014 4.014 13 C 0.222 3.778 14 O -0.465 6.465 15 N -0.186 5.186 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.762 3.238 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.197 1.197 24 N -0.103 5.103 25 H 0.277 0.723 26 C 0.025 3.975 27 C -0.161 4.161 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.183 0.817 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.111 -23.705 0.001 24.480 hybrid contribution 0.336 1.184 -0.012 1.231 sum -5.775 -22.521 -0.011 23.249 Atomic orbital electron populations 1.21814 0.92609 1.02909 1.03737 1.23011 0.95323 0.80052 1.02558 1.86568 1.23755 1.32183 1.84395 1.19943 0.80357 0.88316 0.72056 1.90794 1.60255 1.42289 1.47726 1.18272 0.91934 0.90787 1.23316 1.21252 0.99701 0.88686 0.96862 1.18982 0.84656 0.90132 1.20715 1.19787 0.83815 0.85226 0.73557 1.90909 1.20772 1.80410 1.46563 1.86576 1.37005 1.17463 1.83486 1.22790 0.98088 0.76641 1.03841 1.19279 0.89095 0.83253 0.86209 1.90545 1.27463 1.72785 1.55672 1.41693 1.10155 1.03333 1.63462 1.19672 0.87615 0.87563 1.48530 0.87654 1.25328 0.98444 0.97172 0.96738 1.69605 1.22617 1.12087 1.49238 0.85844 0.80632 0.78142 0.79190 1.19748 1.20812 1.19741 1.41863 1.09173 1.05887 1.53376 0.72281 1.20905 0.95643 0.83508 0.97413 1.20754 0.93293 0.97602 1.04416 0.90276 0.91368 0.91361 0.91228 0.91232 0.81656 0.89235 0.89231 0.77077 0.91485 0.89330 0.87674 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.46 16 2 C 0.06 0.50 6.20 37.16 0.23 0.73 16 3 O -0.35 -3.75 10.07 -40.64 -0.41 -4.15 16 4 C 0.55 6.43 7.95 34.39 0.27 6.70 16 5 O -0.52 -6.64 14.58 -19.29 -0.28 -6.92 16 6 C -0.24 -2.73 6.13 -105.04 -0.64 -3.38 16 7 C -0.04 -0.49 10.41 -39.07 -0.41 -0.90 16 8 C -0.04 -0.48 7.02 -82.43 -0.58 -1.06 16 9 C 0.53 8.45 7.93 34.12 0.27 8.72 16 10 O -0.50 -8.67 16.65 -19.35 -0.32 -8.99 16 11 O -0.33 -5.87 9.77 -47.64 -0.47 -6.33 16 12 C 0.06 1.17 5.96 36.01 0.21 1.39 16 13 C 0.44 10.20 7.86 -10.99 -0.09 10.11 16 14 O -0.58 -15.51 16.08 -14.12 -0.23 -15.74 16 15 N -0.55 -13.57 5.29 -10.96 -0.06 -13.62 16 16 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 17 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.90 -23.62 13.05 55.50 0.72 -22.89 16 20 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 N -0.51 -5.54 6.01 -5.62 -0.03 -5.58 16 25 H 0.44 4.22 8.96 -40.82 -0.37 3.85 16 26 C 0.15 1.55 7.21 -81.52 -0.59 0.97 16 27 C -0.10 -0.78 9.88 36.01 0.36 -0.43 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.40 9.26 7.90 -40.82 -0.32 8.93 16 37 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.89 6.45 -51.93 -0.34 0.55 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -33.05 364.48 -6.18 -39.23 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -4.76 Total: 9.60 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: -0.82 Total: 14.58 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.63 Total: -42.10 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -1.70 Total: -42.14 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.05 -6.18 -39.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837874541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.040 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds