Wall clock time and date at job start Tue Mar 31 2020 13:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45202 * 109.47072 * 2 1 4 4 C 1.34755 * 117.00154 * 179.97438 * 3 2 1 5 5 O 1.21528 * 119.99914 * 0.02562 * 4 3 2 6 6 C 1.47248 * 120.00013 * 180.02562 * 4 3 2 7 7 C 1.41310 * 126.46862 * 0.04297 * 6 4 3 8 8 C 1.36417 * 106.99805 * 179.97438 * 7 6 4 9 9 C 1.46643 * 125.84876 * 180.02562 * 8 7 6 10 10 O 1.21608 * 119.99970 * 359.97438 * 9 8 7 11 11 O 1.34868 * 120.00422 * 179.97438 * 9 8 7 12 12 C 1.45198 * 117.00209 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.46966 * 180.02562 * 12 11 9 14 14 O 1.21294 * 119.99978 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00037 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99971 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00106 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99839 * 180.02562 * 16 15 13 19 19 N 1.31421 * 120.00337 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00253 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47155 * 59.99671 * 20 18 16 22 22 H 1.48494 * 109.47411 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46775 * 300.00114 * 20 18 16 24 24 N 1.37835 * 108.30274 * 359.74703 * 8 7 6 25 25 H 0.97004 * 125.39118 * 180.26519 * 24 8 7 26 26 C 1.34197 * 109.22759 * 0.42974 * 24 8 7 27 27 C 1.50703 * 125.79887 * 179.83679 * 26 24 8 28 28 H 1.09000 * 109.47032 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47204 * 299.99559 * 1 2 3 30 30 H 1.08997 * 109.46938 * 60.00189 * 1 2 3 31 31 H 1.09000 * 109.47041 * 239.99932 * 2 1 3 32 32 H 1.08997 * 109.46938 * 119.99811 * 2 1 3 33 33 H 1.08000 * 126.49900 * 359.96613 * 7 6 4 34 34 H 1.09000 * 109.47084 * 300.00005 * 12 11 9 35 35 H 1.08996 * 109.46955 * 59.99856 * 12 11 9 36 36 H 0.96998 * 120.00266 * 0.02562 * 15 13 12 37 37 H 0.96998 * 120.00290 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.47152 * 269.68986 * 27 26 24 39 39 H 1.09001 * 109.46980 * 149.69086 * 27 26 24 40 40 H 1.09004 * 109.47113 * 29.69067 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5456 0.0005 5 8 4.0903 0.5818 0.0005 6 6 3.9127 2.9063 0.0011 7 6 3.1836 4.1168 0.0021 8 6 4.0954 5.1315 0.0030 9 6 3.7852 6.5647 0.0046 10 8 2.6272 6.9363 0.0049 11 8 4.7841 7.4710 0.0059 12 6 4.4030 8.8720 0.0081 13 6 5.6422 9.7296 0.0086 14 8 6.7387 9.2109 0.0068 15 7 5.5322 11.0728 0.0100 16 6 6.6596 11.8530 0.0110 17 1 7.6359 11.3912 0.0102 18 6 6.5462 13.2378 0.0131 19 7 5.3582 13.7998 0.0145 20 14 8.0822 14.3009 0.0137 21 1 8.8870 14.0086 -1.1996 22 1 7.6926 15.7338 0.0153 23 1 8.8883 14.0051 1.2253 24 7 5.3581 4.5789 0.0084 25 1 6.1898 5.0781 0.0137 26 6 5.2549 3.2409 0.0014 27 6 6.4059 2.2680 0.0006 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1085 4.2191 0.0020 34 1 3.8117 9.0892 -0.8815 35 1 3.8120 9.0864 0.8985 36 1 4.6554 11.4876 0.0111 37 1 5.2790 14.7666 0.0156 38 1 6.6834 2.0343 -1.0273 39 1 6.1088 1.3533 0.5137 40 1 7.2579 2.7127 0.5148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837874541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:42 Heat of formation + Delta-G solvation = -192.923214 kcal Electronic energy + Delta-G solvation = -25964.828585 eV Core-core repulsion = 21744.683457 eV Total energy + Delta-G solvation = -4220.145129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.94091 -41.43604 -40.88007 -39.97112 -37.59509 -37.51517 -36.04854 -33.44150 -33.21005 -32.93239 -32.14378 -30.29132 -28.32243 -26.67797 -25.49340 -23.96200 -23.05576 -21.57916 -21.47635 -20.96542 -20.09314 -19.96172 -18.28329 -18.05617 -17.85740 -17.60680 -17.50265 -16.85695 -16.68005 -16.18803 -16.05736 -15.74497 -15.55130 -14.83773 -14.79501 -14.72472 -14.29896 -14.08919 -14.03657 -13.71267 -13.56054 -13.48284 -13.42883 -12.94341 -12.93047 -12.84559 -12.50044 -12.43996 -12.14290 -12.02316 -11.95074 -11.58330 -11.53603 -11.45427 -10.54386 -10.46554 -10.13440 -9.55633 -8.53378 -6.04286 -0.00464 0.34293 1.17869 1.36649 1.43401 1.52266 1.54687 1.70664 1.85521 2.00158 2.13841 2.28728 3.00379 3.12230 3.56250 3.66608 3.74366 3.85048 3.99748 4.08251 4.13611 4.14033 4.19887 4.27799 4.41492 4.58841 4.64970 4.68300 4.91532 4.98002 5.08274 5.10705 5.20981 5.25993 5.35647 5.42357 5.54170 5.87108 6.08271 6.40803 6.51339 6.79699 7.01064 7.38006 7.90652 8.63164 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.030696 B = 0.002022 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.963283 B =13842.847663 C =14723.758999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.360 6.360 4 C 0.547 3.453 5 O -0.534 6.534 6 C -0.254 4.254 7 C -0.030 4.030 8 C -0.060 4.060 9 C 0.537 3.463 10 O -0.518 6.518 11 O -0.342 6.342 12 C 0.074 3.926 13 C 0.437 3.563 14 O -0.618 6.618 15 N -0.556 5.556 16 C -0.339 4.339 17 H 0.086 0.914 18 C -0.009 4.009 19 N -0.914 5.914 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.270 1.270 24 N -0.503 5.503 25 H 0.442 0.558 26 C 0.171 3.829 27 C -0.102 4.102 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.172 0.828 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.400 0.600 37 H 0.281 0.719 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 -24.384 -0.029 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.277 6.277 4 C 0.395 3.605 5 O -0.426 6.426 6 C -0.261 4.261 7 C -0.054 4.054 8 C -0.167 4.167 9 C 0.383 3.617 10 O -0.407 6.407 11 O -0.258 6.258 12 C -0.003 4.003 13 C 0.223 3.777 14 O -0.505 6.505 15 N -0.193 5.193 16 C -0.468 4.468 17 H 0.104 0.896 18 C -0.209 4.209 19 N -0.554 5.554 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.195 1.195 24 N -0.099 5.099 25 H 0.284 0.716 26 C 0.043 3.957 27 C -0.159 4.159 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.189 0.811 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.235 0.765 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.162 -24.483 -0.025 25.246 hybrid contribution 0.300 1.282 -0.004 1.316 sum -5.862 -23.201 -0.030 23.930 Atomic orbital electron populations 1.21838 0.90808 1.04344 1.03572 1.23298 0.96748 0.78801 1.02850 1.86566 1.23110 1.33947 1.84055 1.19948 0.80704 0.88136 0.71759 1.90781 1.60617 1.42617 1.48570 1.18419 0.92572 0.90691 1.24371 1.21386 1.00016 0.88626 0.95380 1.18727 0.85899 0.88809 1.23307 1.20058 0.83187 0.85703 0.72782 1.90891 1.21249 1.80784 1.47798 1.86566 1.38036 1.17204 1.83993 1.22577 0.95346 0.76644 1.05773 1.20038 0.90205 0.83162 0.84259 1.90512 1.29553 1.73462 1.56947 1.41730 1.09853 1.03926 1.63826 1.19687 0.87703 0.88598 1.50810 0.89632 1.26132 1.01479 0.97718 0.95619 1.69666 1.24086 1.12689 1.48943 0.84912 0.77075 0.76791 0.79119 1.19498 1.19474 1.19484 1.41852 1.08750 1.06123 1.53202 0.71616 1.21361 0.96124 0.83426 0.94743 1.20873 0.92905 0.96624 1.05499 0.88031 0.91510 0.91504 0.90958 0.90956 0.81083 0.87235 0.87222 0.76518 0.90939 0.87944 0.88240 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 71.98 0.74 -0.67 16 2 C 0.06 0.82 6.20 71.98 0.45 1.26 16 3 O -0.36 -7.37 10.07 -56.66 -0.57 -7.94 16 4 C 0.55 12.38 7.95 70.19 0.56 12.94 16 5 O -0.53 -13.10 14.58 19.75 0.29 -12.82 16 6 C -0.25 -5.62 6.13 -20.13 -0.12 -5.74 16 7 C -0.03 -0.69 10.41 22.60 0.24 -0.46 16 8 C -0.06 -1.54 7.02 39.97 0.28 -1.26 16 9 C 0.54 16.76 7.93 70.02 0.56 17.31 16 10 O -0.52 -17.69 16.65 19.48 0.32 -17.36 16 11 O -0.34 -12.02 9.77 -51.42 -0.50 -12.53 16 12 C 0.07 2.66 5.96 71.24 0.42 3.08 16 13 C 0.44 20.57 7.86 87.66 0.69 21.26 16 14 O -0.62 -33.62 16.08 15.72 0.25 -33.37 16 15 N -0.56 -27.79 5.29 -306.99 -1.62 -29.41 16 16 C -0.34 -18.61 9.68 84.04 0.81 -17.79 16 17 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 18 C -0.01 -0.44 5.50 84.92 0.47 0.03 16 19 N -0.91 -47.79 13.05 21.66 0.28 -47.51 16 20 Si 1.00 41.25 29.55 68.60 2.03 43.28 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 24 N -0.50 -10.44 6.01 -171.69 -1.03 -11.47 16 25 H 0.44 8.10 8.96 -92.71 -0.83 7.27 16 26 C 0.17 3.25 7.21 42.22 0.30 3.55 16 27 C -0.10 -1.33 9.88 71.24 0.70 -0.63 16 28 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 35 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 36 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 37 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 38 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.10 1.50 6.45 -2.39 -0.02 1.49 16 40 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -70.52 364.48 5.10 -65.43 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: -0.45 Total: 30.80 kcal Atomic # 6 Polarization: 26.80 SS G_CDS: 6.09 Total: 32.89 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -2.37 Total: -88.39 kcal Atomic # 8 Polarization: -83.81 SS G_CDS: -0.21 Total: -84.01 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -70.52 5.10 -65.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837874541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.496 kcal (2) G-P(sol) polarization free energy of solvation -70.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds