Wall clock time and date at job start Tue Mar 31 2020 14:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28468 * 124.88300 * 2 1 4 4 C 1.31795 * 110.11159 * 180.18315 * 3 2 1 5 5 C 1.47708 * 126.51345 * 179.82171 * 4 3 2 6 6 O 1.21576 * 120.00240 * 179.69112 * 5 4 3 7 7 N 1.34779 * 120.00320 * 359.68645 * 5 4 3 8 8 C 1.46490 * 120.00496 * 180.02562 * 7 5 4 9 9 H 1.09005 * 110.68275 * 38.32536 * 8 7 5 10 10 C 1.55475 * 110.61243 * 161.46818 * 8 7 5 11 11 C 1.55845 * 103.33094 * 118.41534 * 10 8 7 12 12 H 1.08998 * 116.12847 * 159.23435 * 11 10 8 13 13 C 1.55387 * 105.04328 * 288.04461 * 11 10 8 14 14 C 1.54857 * 103.48522 * 72.07176 * 13 11 10 15 15 C 1.55841 * 110.62970 * 275.34232 * 8 7 5 16 16 H 1.09002 * 116.13100 * 82.35475 * 15 8 7 17 17 N 1.50232 * 101.05219 * 208.57223 * 15 8 7 18 18 C 1.36938 * 130.83776 * 233.92681 * 17 15 8 19 19 H 1.08002 * 120.00490 * 352.07947 * 18 17 15 20 20 C 1.38812 * 119.99896 * 172.07683 * 18 17 15 21 21 N 1.31622 * 119.99820 * 157.97200 * 20 18 17 22 22 Si 1.86802 * 120.00225 * 338.24860 * 20 18 17 23 23 H 1.48497 * 109.46821 * 94.21965 * 22 20 18 24 24 H 1.48493 * 109.47198 * 214.21852 * 22 20 18 25 25 H 1.48499 * 109.46938 * 334.22229 * 22 20 18 26 26 C 1.41504 * 106.97835 * 359.55896 * 4 3 2 27 27 C 1.35064 * 124.88705 * 179.68908 * 2 1 3 28 28 Cl 1.73599 * 126.40005 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.46730 * 270.30852 * 1 2 3 30 30 H 1.09001 * 109.47293 * 30.31008 * 1 2 3 31 31 H 1.08999 * 109.46666 * 150.31407 * 1 2 3 32 32 H 0.97005 * 119.99053 * 359.97438 * 7 5 4 33 33 H 1.09010 * 110.60939 * 0.02562 * 10 8 7 34 34 H 1.09001 * 110.75959 * 236.90791 * 10 8 7 35 35 H 1.09003 * 110.71778 * 313.51694 * 13 11 10 36 36 H 1.08998 * 110.49784 * 190.52445 * 13 11 10 37 37 H 1.08998 * 110.62421 * 241.37678 * 14 13 11 38 38 H 1.09005 * 110.75795 * 118.42734 * 14 13 11 39 39 H 0.97003 * 119.99972 * 179.97438 * 21 20 18 40 40 H 1.08001 * 127.26218 * 180.26313 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4741 0.7178 -0.0040 5 6 4.6266 1.6417 -0.0090 6 8 5.7595 1.2004 -0.0067 7 7 4.4225 2.9739 -0.0162 8 6 5.5654 3.8901 -0.0218 9 1 6.3660 3.5032 -0.6524 10 6 5.1293 5.3065 -0.4919 11 6 5.4416 6.2065 0.7414 12 1 5.5498 7.2727 0.5425 13 6 4.3653 5.8312 1.7974 14 6 4.7986 4.4213 2.2693 15 6 6.0794 4.1356 1.4288 16 1 6.7494 3.3780 1.8354 17 7 6.6540 5.5178 1.3007 18 6 7.8981 6.0022 1.6056 19 1 8.6078 5.3776 2.1278 20 6 8.2471 7.2959 1.2433 21 7 9.2196 7.9169 1.8765 22 14 7.3314 8.1585 -0.1376 23 1 6.2312 8.9763 0.4332 24 1 8.2694 9.0391 -0.8791 25 1 6.7656 7.1457 -1.0646 26 6 3.5287 -0.6961 0.0037 27 6 2.2376 -1.1079 0.0060 28 17 1.6806 -2.7521 0.0143 29 1 -0.3633 0.0055 1.0276 30 1 -0.3634 0.8872 -0.5186 31 1 -0.3632 -0.8928 -0.5090 32 1 3.5186 3.3259 -0.0185 33 1 4.0633 5.3239 -0.7195 34 1 5.7129 5.6234 -1.3563 35 1 3.3750 5.7966 1.3432 36 1 4.3833 6.5366 2.6282 37 1 4.0231 3.6876 2.0492 38 1 5.0310 4.4249 3.3343 39 1 9.4638 8.8209 1.6232 40 1 4.4128 -1.3164 0.0071 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095731580.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:43 Heat of formation + Delta-G solvation = 107.143033 kcal Electronic energy + Delta-G solvation = -25404.522465 eV Core-core repulsion = 21670.391101 eV Total energy + Delta-G solvation = -3734.131364 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.04735 -40.15818 -38.42350 -37.33607 -34.12029 -33.86584 -32.35977 -30.88428 -29.76334 -29.40273 -28.65423 -27.41921 -24.23539 -23.27340 -21.87740 -21.53944 -20.45463 -19.96933 -18.85563 -18.32525 -17.10757 -16.88466 -16.65752 -15.87161 -15.40639 -15.07501 -14.61000 -14.48160 -14.15106 -13.84087 -13.42896 -13.35087 -13.15237 -12.97940 -12.67151 -12.47130 -12.16253 -12.12319 -11.89301 -11.24779 -11.18418 -11.10774 -11.08863 -10.85099 -10.43562 -10.29850 -9.98182 -9.71281 -9.56020 -9.53414 -9.36244 -9.23704 -8.88052 -8.62912 -7.20353 -5.88604 -3.13927 1.06791 1.21800 1.65454 2.11800 3.28285 3.31915 3.40542 3.46609 3.50910 3.90216 4.53381 4.55919 4.57933 4.72387 4.80329 4.84579 5.06284 5.19946 5.22340 5.33430 5.41447 5.65464 5.68523 5.78933 5.87178 5.93157 5.97374 6.02516 6.06720 6.27229 6.33221 6.43350 6.47720 6.65248 6.74230 6.90490 6.94467 7.33572 7.40751 7.74553 8.34007 8.35802 8.76302 9.68419 10.27005 11.27958 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.031262 B = 0.002900 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.438388 B = 9652.505416 C = 9962.768469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.276 5.276 3 N -0.241 5.241 4 C 0.001 3.999 5 C 0.599 3.401 6 O -0.525 6.525 7 N -0.698 5.698 8 C 0.128 3.872 9 H 0.092 0.908 10 C -0.140 4.140 11 C 0.122 3.878 12 H 0.092 0.908 13 C -0.130 4.130 14 C -0.130 4.130 15 C 0.139 3.861 16 H 0.098 0.902 17 N -0.603 5.603 18 C -0.224 4.224 19 H 0.099 0.901 20 C 0.015 3.985 21 N -0.913 5.913 22 Si 0.872 3.128 23 H -0.291 1.291 24 H -0.305 1.305 25 H -0.260 1.260 26 C -0.150 4.150 27 C 0.046 3.954 28 Cl 0.001 6.999 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.402 0.598 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.262 0.738 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.233 -17.897 -4.984 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.067 5.067 3 N -0.078 5.078 4 C -0.159 4.159 5 C 0.382 3.618 6 O -0.400 6.400 7 N -0.349 5.349 8 C 0.022 3.978 9 H 0.110 0.890 10 C -0.180 4.180 11 C 0.016 3.984 12 H 0.110 0.890 13 C -0.170 4.170 14 C -0.170 4.170 15 C 0.030 3.970 16 H 0.116 0.884 17 N -0.325 5.325 18 C -0.350 4.350 19 H 0.116 0.884 20 C -0.182 4.182 21 N -0.558 5.558 22 Si 0.705 3.295 23 H -0.219 1.219 24 H -0.233 1.233 25 H -0.185 1.185 26 C -0.179 4.179 27 C -0.104 4.104 28 Cl 0.029 6.971 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.237 0.763 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -21.959 -17.206 -4.921 28.328 hybrid contribution -0.626 -0.082 -0.783 1.006 sum -22.585 -17.288 -5.704 29.009 Atomic orbital electron populations 1.22292 0.72625 1.05914 1.05098 1.45461 1.08082 1.01618 1.51509 1.73693 1.03182 1.11869 1.19030 1.21996 0.90913 0.93781 1.09185 1.16755 0.86200 0.81697 0.77144 1.90833 1.22104 1.77013 1.50003 1.46054 1.10635 1.05032 1.73213 1.22792 0.87127 0.87908 0.99954 0.89040 1.23457 0.99944 0.94798 0.99805 1.23042 0.87609 0.95927 0.91849 0.89043 1.22859 0.97225 0.97340 0.99551 1.22910 0.98020 0.96059 0.99963 1.23193 0.92926 0.88359 0.92520 0.88368 1.46836 1.08329 1.03123 1.74238 1.18678 0.88273 0.97623 1.30412 0.88383 1.24718 0.97541 0.96110 0.99881 1.69841 1.32758 1.12637 1.40552 0.87078 0.78010 0.79383 0.85040 1.21939 1.23335 1.18542 1.21502 0.95386 0.94009 1.07019 1.21897 0.91170 0.83640 1.13711 1.98404 1.89667 1.11652 1.97348 0.89100 0.87760 0.88500 0.76305 0.91709 0.90501 0.92683 0.92021 0.92338 0.92209 0.92847 0.80843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.34 11.14 59.85 0.67 1.01 16 2 N -0.28 -2.48 3.70 -64.87 -0.24 -2.72 16 3 N -0.24 -2.74 11.66 33.42 0.39 -2.35 16 4 C 0.00 0.02 7.13 -82.77 -0.59 -0.57 16 5 C 0.60 9.34 7.81 -12.39 -0.10 9.24 16 6 O -0.53 -9.91 16.68 5.30 0.09 -9.83 16 7 N -0.70 -10.22 3.61 -52.06 -0.19 -10.41 16 8 C 0.13 2.26 3.08 -65.10 -0.20 2.06 16 9 H 0.09 1.79 7.75 -51.93 -0.40 1.39 16 10 C -0.14 -2.46 5.99 -23.90 -0.14 -2.61 16 11 C 0.12 2.53 3.54 -63.05 -0.22 2.30 16 12 H 0.09 2.05 3.47 -51.93 -0.18 1.87 16 13 C -0.13 -2.28 6.42 -24.49 -0.16 -2.43 16 14 C -0.13 -2.25 6.33 -24.23 -0.15 -2.40 16 15 C 0.14 2.77 5.34 -62.81 -0.34 2.44 16 16 H 0.10 2.06 8.14 -51.93 -0.42 1.63 16 17 N -0.60 -14.38 2.85 -146.09 -0.42 -14.80 16 18 C -0.22 -6.35 10.94 -15.06 -0.16 -6.52 16 19 H 0.10 2.97 8.06 -52.49 -0.42 2.55 16 20 C 0.01 0.43 5.50 -17.43 -0.10 0.34 16 21 N -0.91 -28.50 13.97 55.49 0.78 -27.73 16 22 Si 0.87 21.99 24.62 -169.99 -4.18 17.81 16 23 H -0.29 -7.18 6.82 56.52 0.39 -6.80 16 24 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 25 H -0.26 -6.07 4.73 56.52 0.27 -5.81 16 26 C -0.15 -1.74 10.80 -39.31 -0.42 -2.16 16 27 C 0.05 0.43 7.44 -17.10 -0.13 0.31 16 28 Cl 0.00 0.01 28.67 -51.86 -1.49 -1.48 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.24 7.71 -51.93 -0.40 -0.16 16 32 H 0.40 5.05 7.78 -40.82 -0.32 4.74 16 33 H 0.06 0.92 7.32 -51.92 -0.38 0.54 16 34 H 0.08 1.44 6.59 -51.93 -0.34 1.09 16 35 H 0.05 0.79 7.80 -51.93 -0.41 0.38 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.88 6.51 -51.93 -0.34 0.54 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 40 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -33.76 335.95 -7.26 -41.01 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.01 Total: 4.42 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.05 Total: 1.01 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.32 Total: -58.01 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.18 Total: 17.81 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.49 Total: -1.48 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.76 -7.26 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095731580.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.157 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds